Clone LD26817 Report

Search the DGRC for LD26817

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:268
Well:17
Vector:pOT2
Associated Gene/Transcriptakirin-RB
Protein status:LD26817.pep: gold
Preliminary Size:1379
Sequenced Size:1267

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8580 2001-01-01 Release 2 assignment
CG8580 2002-04-09 Blastp of sequenced clone
CG8580 2003-01-01 Sim4 clustering to Release 3
bhr 2008-04-29 Release 5.5 accounting
bhr 2008-08-15 Release 5.9 accounting
akirin 2008-12-18 5.12 accounting

Clone Sequence Records

LD26817.complete Sequence

1267 bp (1267 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095189

> LD26817.complete
CCGTCACGCAAGCATCGTCGTCCATTTTTGCTAAGAAGCGAGACGAAAAT
TTGTAAATTATATCTAGCGAGTCGCCGAGGACGAACAACTATTGACAGTG
CATTTCAGTGGCCTTTGGAATACTGCTCAAACAACCAGCAAGCAATAACA
TTACTTATATCTAACCGAAAACCTAAATTAATCACCCAAACTGAAGTACG
GACGTGAATGTAAGTGGGTATGTGCCAGCGGACTAGTGGCACAATAAAAA
AGTAAATAAAGCGCGTGTGAAGTGGTGCAGAAAGCAAAAAAGCAGTCGGA
AGGAAAAATCAAAATACGCATTAATCCGACGCTTGATCTTCCATCTGCAG
CATCCATCATTTGGAATCGAGGCAATAATCAGCATCTACCGACAATCAAG
CAAGCCATCTATCTATCAGAAGACCACCGGGTAGTAGAACCTCAATCATA
GCGATGGCCTGTGCAACCCTGAAACGAGCCCTAGACTGGGAGTCGATGAA
CCAGCGGCCTCCGAAGCGCCGGCGTTGCAATCCCTTTGGCCAGGCTGGGA
GCAATGCAGGTCCAGCGTCGCCATCCCGCGACGGTCCCAGCACCTCGGCT
GGTCTGCCCCACACGCCCAGCAACCGATTCGCCAAGGATAGCACCGAACC
TAGTCCGTTCAGTGAGTCGTCGCTGGCCAAAATGTCACCAGACAAAATGG
CCGAGAGCTTGTGCAATGAGATCAAGAGACTGCACAAGCGCAAACAGCTG
CCGATCACTTCGTCGGCCTTGGAACGCATGCAGGATTCGGAGTCCAGCGG
ATCGGAGATGGGTCCAGAGAGTCCGCGCCGCCCGGACAGTCCACAGAACC
TGATGCGCCACGGCGAAAAGGCCCTGTTCACGTTCAAGCAGGTGCAGCTC
ATTTGCGAGAGCATGATCAAGGAGCGCGAGAATCAGCTAAGGGAGCGCTA
CGAGTCCGTGCTGACCACCAAGCTGGCCGAGCAGTACGATGCCTTTGTCA
AGTTCACATATGATCAGATACAGCGTCGCTACGAGGCAGCGCCTAGCTAC
CTGTCGTAAAGCTGTGTACACAGCTGTAGCCTCAGAAAGAAGAAATTAAT
AATTGCACTACGATCTTATGTGACGGTAGATCTACCGCGACAACAACAGC
CCTCATAAACTATAACAAACAACAAATAAGGAAACTAAAGCAAACGCAAA
ACAAACCAACAAAAAAAAAAAACCTAAAAAGCAAAAAACCTAAAAACAAA
CAAAAAAAAAAAAAAAA

LD26817.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
akirin.e 2338 akirin.e 124..1387 1..1264 6320 100 Plus
akirin.c 2510 akirin.c 124..1387 1..1264 6320 100 Plus
akirin-RA 1609 akirin-RA 124..1387 1..1264 6320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7363814..7364179 326..691 1815 99.7 Plus
chr3L 24539361 chr3L 7364267..7364626 689..1048 1800 100 Plus
chr3L 24539361 chr3L 7361966..7362290 1..325 1625 100 Plus
chr3L 24539361 chr3L 7364688..7364887 1049..1251 935 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7371707..7372072 326..691 1830 100 Plus
3L 28110227 3L 7372160..7372519 689..1048 1800 100 Plus
3L 28110227 3L 7369860..7370184 1..325 1625 100 Plus
3L 28110227 3L 7372581..7372796 1049..1264 1080 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7364807..7365172 326..691 1830 100 Plus
3L 28103327 3L 7365260..7365619 689..1048 1800 100 Plus
3L 28103327 3L 7362960..7363284 1..325 1625 100 Plus
3L 28103327 3L 7365681..7365896 1049..1264 1080 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:26:13 has no hits.

LD26817.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:25 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7363814..7364179 326..691 99 -> Plus
chr3L 7364270..7364626 692..1048 100 -> Plus
chr3L 7364688..7364792 1049..1153 100 == Plus
chr3L 7361966..7362290 1..325 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:52 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RB 1..606 454..1059 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:11:36 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RC 1..606 454..1059 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:35 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 1..606 454..1059 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:18 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
bhr-RB 1..606 454..1059 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:39 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 1..606 454..1059 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:05 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RA 62..1312 1..1251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:11:36 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RD 61..1311 1..1251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:35 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RA 18..1268 1..1251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:18 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
bhr-RA 62..1312 1..1251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:39 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
akirin-RA 18..1268 1..1251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:25 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7369860..7370184 1..325 100 -> Plus
3L 7371707..7372072 326..691 100 -> Plus
3L 7372163..7372519 692..1048 100 -> Plus
3L 7372581..7372783 1049..1251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:25 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7369860..7370184 1..325 100 -> Plus
3L 7371707..7372072 326..691 100 -> Plus
3L 7372163..7372519 692..1048 100 -> Plus
3L 7372581..7372783 1049..1251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:25 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7369860..7370184 1..325 100 -> Plus
3L 7371707..7372072 326..691 100 -> Plus
3L 7372163..7372519 692..1048 100 -> Plus
3L 7372581..7372783 1049..1251 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:35 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7362960..7363284 1..325 100 -> Plus
arm_3L 7364807..7365172 326..691 100 -> Plus
arm_3L 7365263..7365619 692..1048 100 -> Plus
arm_3L 7365681..7365883 1049..1251 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:43 Download gff for LD26817.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7362960..7363284 1..325 100 -> Plus
3L 7364807..7365172 326..691 100 -> Plus
3L 7365263..7365619 692..1048 100 -> Plus
3L 7365681..7365883 1049..1251 100   Plus

LD26817.hyp Sequence

Translation from 453 to 1058

> LD26817.hyp
MACATLKRALDWESMNQRPPKRRRCNPFGQAGSNAGPASPSRDGPSTSAG
LPHTPSNRFAKDSTEPSPFSESSLAKMSPDKMAESLCNEIKRLHKRKQLP
ITSSALERMQDSESSGSEMGPESPRRPDSPQNLMRHGEKALFTFKQVQLI
CESMIKERENQLRERYESVLTTKLAEQYDAFVKFTYDQIQRRYEAAPSYL
S*

LD26817.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-PF 201 CG8580-PF 1..201 1..201 1045 100 Plus
akirin-PE 201 CG8580-PE 1..201 1..201 1045 100 Plus
akirin-PD 201 CG8580-PD 1..201 1..201 1045 100 Plus
akirin-PC 201 CG8580-PC 1..201 1..201 1045 100 Plus
akirin-PB 201 CG8580-PB 1..201 1..201 1045 100 Plus

LD26817.pep Sequence

Translation from 453 to 1058

> LD26817.pep
MACATLKRALDWESMNQRPPKRRRCNPFGQAGSNAGPASPSRDGPSTSAG
LPHTPSNRFAKDSTEPSPFSESSLAKMSPDKMAESLCNEIKRLHKRKQLP
ITSSALERMQDSESSGSEMGPESPRRPDSPQNLMRHGEKALFTFKQVQLI
CESMIKERENQLRERYESVLTTKLAEQYDAFVKFTYDQIQRRYEAAPSYL
S*

LD26817.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10638-PA 207 GF10638-PA 1..207 1..201 924 87.9 Plus
Dana\GF15088-PA 1884 GF15088-PA 1..146 1..191 189 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14420-PA 203 GG14420-PA 1..203 1..201 1027 96.6 Plus
Dere\GG21727-PA 2091 GG21727-PA 93..177 105..191 147 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14876-PA 209 GH14876-PA 1..209 1..201 775 76.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
akirin-PF 201 CG8580-PF 1..201 1..201 1045 100 Plus
akirin-PE 201 CG8580-PE 1..201 1..201 1045 100 Plus
akirin-PD 201 CG8580-PD 1..201 1..201 1045 100 Plus
akirin-PC 201 CG8580-PC 1..201 1..201 1045 100 Plus
akirin-PB 201 CG8580-PB 1..201 1..201 1045 100 Plus
akirin-PA 201 CG8580-PA 1..201 1..201 1045 100 Plus
CG42830-PA 187 CG42830-PA 1..187 1..201 169 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12849-PA 206 GI12849-PA 1..206 1..201 857 81.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26352-PA 186 GL26352-PA 1..186 1..201 815 80.6 Plus
Dper\GL24042-PA 191 GL24042-PA 1..191 1..201 727 76.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21176-PA 199 GA21176-PA 1..199 1..201 965 90.5 Plus
Dpse\GA26488-PA 191 GA26488-PA 1..191 1..201 707 75.1 Plus
Dpse\GA23138-PA 136 GA23138-PA 71..123 137..189 152 49.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14836-PA 201 GM14836-PA 1..201 1..201 1066 100 Plus
Dsec\GM17110-PA 2044 GM17110-PA 93..177 105..191 145 37.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14010-PA 201 GD14010-PA 1..201 1..201 1066 100 Plus
Dsim\GD21851-PA 2044 GD21851-PA 93..177 105..191 150 38.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12994-PA 201 GJ12994-PA 1..201 1..201 819 82.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17376-PA 202 GK17376-PA 1..202 1..201 931 88.8 Plus
Dwil\GK20615-PA 167 GK20615-PA 1..167 1..201 301 39.4 Plus
Dwil\GK20213-PA 141 GK20213-PA 80..141 140..201 224 69.4 Plus
Dwil\GK20616-PA 240 GK20616-PA 177..240 138..201 220 65.6 Plus
Dwil\GK20617-PA 167 GK20617-PA 104..167 138..201 219 64.1 Plus
Dwil\GK20213-PA 141 GK20213-PA 18..79 138..199 214 66.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21610-PA 203 GE21610-PA 1..203 1..201 1040 97 Plus
Dyak\GE13116-PA 1972 GE13116-PA 127..179 139..191 162 50.9 Plus