Clone LD26833 Report

Search the DGRC for LD26833

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:268
Well:33
Vector:pOT2
Associated Gene/Transcriptrogdi-RA
Protein status:LD26833.pep: gold
Preliminary Size:2122
Sequenced Size:2028

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7725 2001-09-19 Blastp of sequenced clone
CG7725 2003-01-01 Sim4 clustering to Release 3
rogdi 2008-04-29 Release 5.5 accounting
rogdi 2008-08-15 Release 5.9 accounting
rogdi 2008-12-18 5.12 accounting

Clone Sequence Records

LD26833.complete Sequence

2028 bp (2028 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060379

> LD26833.complete
CTGAAATAAAAACAAAATTACAGCGCTCACAATACAAATTGCTGGCGTTG
CTGCAGCGGAAAGCGGACATAAGCGCAGATTCTTAGCAGCGCGGAAAAAG
CCGAAAAGCGCGATGAAAATGCTCGCGGACACGGAGCGTGAGGAAGCCCT
CAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACACGCGA
TACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATTTCCG
GTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATACTCAC
CGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGATGCCA
TCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCAAACG
CAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGGTCCA
GGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGATGTCG
ACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGATAGGC
AACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGCCCAA
AAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCGCTGG
TGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAGCCAC
AAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAATGCG
CTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGACGTGC
TACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGACAAG
ATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTTCGCC
CTCGGCACTTTCCTACTGAGACGGGAATGCGCCGGGAAATGGAAGCCGGG
TATGGAAACCCTTGATCGATGGCACTGGTGGATCGGCGACAGAAACAATA
ACAACAATAATAGCTAATAAAGAACCGTACTTGTAATAGCGAAGTAAATA
ATGTTAGTTGAAATGTTGCTACTGGAAACGGCACACCCATAATACCCATG
CATACTATACTATATACTATACTATACAATACAATACTTTAAAACACTAT
ACTGCTATATACAGTAGTGTATAGAAAGTTATATACATACATACATGCAT
ACAACTAGTTTAATGTACACAATCAACATTCATGTTAAATTACGACTACG
CAGAACCTGAGTTCATCGCTTCACGTCACTCCAATTATGCATCAAAATGC
ATCTAAATAGCATTAGGCTGAGAATTGAGAACAGAGAACGTTTGTGAAAA
CCAATTGTGTTTGTATGTGTAACAAAATGAAATTGCTAGATAATTATAGT
TTATTCGTACATGTAATTTAATGTAATGTAATACCATGGCCCTTATTTAT
GTTTGCTACGATGCAACAAAATCCACCAAGTCAGCAGTCAATCGGTACTT
AAAGTCGGTACTTACAACGTTTATACCCCCTAACACAGCCCCCTATATAC
ATACATACTTAGGTGCACACGGAAGGGGCATCTACATCGGCATTTACATG
ATATTGTTGTAATAAACCAAACCGAAATGTGAACAGAATTTTTAATTGTA
CTAAACTAAACACCGTTTTGTATTCGTATTCGTAATTGTATATCCGTAAT
TGTATTTCGCGTACTCGTTAATGGTTAATGGTTAAGAGCGCCCAATCCTA
ATCTAATCCAAAGTCATTTGTATCAACGGCCTTTACTTCTCGTTTACTTT
ATACATCTACCAGGGAGTTTATAAAGATATAGAAAGTTATTGAATGAGAT
GCAACGAAAACAATTACCACTGTACTTATTGAATATTGCAATTGCCTAAG
CACCCCACTAAATGCATGGGAAGAGAAGACAACTATTTATGTAATCACTA
AGCGTACTTACTGTCCACATTCATTTACTTGTTGTTGAATAAAAATTACC
TTTTACCAAAAAAAAAAAAAAAAAAAAA

LD26833.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2069 rogdi-RA 46..2055 1..2010 10050 100 Plus
rogdi-RB 2403 rogdi-RB 403..2389 24..2010 9935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17043752..17044910 849..2007 5750 99.7 Plus
chr3L 24539361 chr3L 17042407..17042737 520..850 1640 99.7 Plus
chr3L 24539361 chr3L 17042173..17042330 362..519 790 100 Plus
chr3L 24539361 chr3L 17040750..17040906 1..157 770 99.4 Plus
chr3L 24539361 chr3L 17041454..17041587 229..362 670 100 Plus
chr3L 24539361 chr3L 17041312..17041385 157..230 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17054296..17055457 849..2010 5810 100 Plus
3L 28110227 3L 17052955..17053285 520..850 1655 100 Plus
3L 28110227 3L 17052721..17052878 362..519 790 100 Plus
3L 28110227 3L 17051298..17051454 1..157 785 100 Plus
3L 28110227 3L 17052002..17052135 229..362 670 100 Plus
3L 28110227 3L 17051860..17051933 157..230 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17047396..17048557 849..2010 5810 100 Plus
3L 28103327 3L 17046055..17046385 520..850 1655 100 Plus
3L 28103327 3L 17045821..17045978 362..519 790 100 Plus
3L 28103327 3L 17044398..17044554 1..157 785 100 Plus
3L 28103327 3L 17045102..17045235 229..362 670 100 Plus
3L 28103327 3L 17044960..17045033 157..230 370 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:36:25 has no hits.

LD26833.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:36 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17042173..17042330 362..519 100 -> Plus
chr3L 17042407..17042737 520..850 99 -> Plus
chr3L 17043754..17044004 851..1101 100 == Plus
chr3L 17040750..17040906 1..157 99 -> Plus
chr3L 17041313..17041384 158..229 100 -> Plus
chr3L 17041455..17041586 230..361 100 -> Plus
chr3L 17044057..17044910 1154..2007 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:53 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 132..1032 15..919 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:44 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 132..1032 15..919 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:35 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 132..1032 15..919 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:15 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 132..1032 15..919 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:18 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 132..1032 15..919 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:09 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 17..2023 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:44 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 17..2023 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:35 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 22..2028 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:16 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 17..2023 1..2007 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:18 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 22..2028 1..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:36 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17051298..17051454 1..157 100 -> Plus
3L 17051861..17051932 158..229 100 -> Plus
3L 17052003..17052134 230..361 100 -> Plus
3L 17052721..17052878 362..519 100 -> Plus
3L 17052955..17053285 520..850 100 -> Plus
3L 17054298..17055454 851..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:36 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17051298..17051454 1..157 100 -> Plus
3L 17051861..17051932 158..229 100 -> Plus
3L 17052003..17052134 230..361 100 -> Plus
3L 17052721..17052878 362..519 100 -> Plus
3L 17052955..17053285 520..850 100 -> Plus
3L 17054298..17055454 851..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:36 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17051298..17051454 1..157 100 -> Plus
3L 17051861..17051932 158..229 100 -> Plus
3L 17052003..17052134 230..361 100 -> Plus
3L 17052721..17052878 362..519 100 -> Plus
3L 17052955..17053285 520..850 100 -> Plus
3L 17054298..17055454 851..2007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:35 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044398..17044554 1..157 100 -> Plus
arm_3L 17044961..17045032 158..229 100 -> Plus
arm_3L 17045103..17045234 230..361 100 -> Plus
arm_3L 17045821..17045978 362..519 100 -> Plus
arm_3L 17046055..17046385 520..850 100 -> Plus
arm_3L 17047398..17048554 851..2007 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:04 Download gff for LD26833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17046055..17046385 520..850 100 -> Plus
3L 17047398..17048554 851..2007 100   Plus
3L 17045103..17045234 230..361 100 -> Plus
3L 17044398..17044554 1..157 100 -> Plus
3L 17044961..17045032 158..229 100 -> Plus
3L 17045821..17045978 362..519 100 -> Plus

LD26833.hyp Sequence

Translation from 112 to 918

> LD26833.hyp
MKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLY
ENEGKKTEKFILTVSPDQLKAVLTLTGDAITQADISFKLCKAPSQTQRTS
ITHDSPWKLQQVQDAANHLQTAINHIDDVDDSYHFKTSDEVLHVIGNILD
ALQRGRNSLLVPKKKPIDELIKGRNMKSLVPNLPEDLAVSFYLQSHKLII
AVYQLLNNQGTMRFDSRQAEASVQWLNDVLLLLMNGQKLCQQLKDKISVF
SVYKDFTVGSRSPSALSY*

LD26833.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-PA 268 CG7725-PA 1..268 1..268 1365 100 Plus
rogdi-PB 343 CG7725-PB 76..343 1..268 1365 100 Plus

LD26833.pep Sequence

Translation from 112 to 918

> LD26833.pep
MKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLY
ENEGKKTEKFILTVSPDQLKAVLTLTGDAITQADISFKLCKAPSQTQRTS
ITHDSPWKLQQVQDAANHLQTAINHIDDVDDSYHFKTSDEVLHVIGNILD
ALQRGRNSLLVPKKKPIDELIKGRNMKSLVPNLPEDLAVSFYLQSHKLII
AVYQLLNNQGTMRFDSRQAEASVQWLNDVLLLLMNGQKLCQQLKDKISVF
SVYKDFTVGSRSPSALSY*

LD26833.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10104-PA 339 GF10104-PA 72..339 1..268 1418 99.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13605-PA 343 GG13605-PA 76..343 1..268 1426 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16403-PA 352 GH16403-PA 84..352 1..268 1381 96.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-PA 268 CG7725-PA 1..268 1..268 1365 100 Plus
rogdi-PB 343 CG7725-PB 76..343 1..268 1365 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12483-PA 352 GI12483-PA 84..352 1..268 1382 96.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23965-PA 174 GA23965-PA 111..174 205..268 341 100 Plus
Dpse\GA23965-PA 174 GA23965-PA 72..110 1..39 191 94.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25687-PA 344 GM25687-PA 77..344 1..268 1428 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14692-PA 344 GD14692-PA 77..344 1..268 1428 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12387-PA 350 GJ12387-PA 82..350 1..268 1380 96.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12664-PA 370 GK12664-PA 103..370 1..268 1415 98.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19900-PA 343 GE19900-PA 76..343 1..268 1426 99.6 Plus