Clone LD26875 Report

Search the DGRC for LD26875

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:268
Well:75
Vector:pOT2
Associated Gene/Transcriptfs(1)Ya-RA
Protein status:LD26875.pep: gold
Preliminary Size:2222
Sequenced Size:2265

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2707 2001-01-01 Release 2 assignment
CG2707 2001-11-29 Blastp of sequenced clone
CG2707 2003-01-01 Sim4 clustering to Release 3
fs(1)Ya 2008-04-29 Release 5.5 accounting
fs(1)Ya 2008-08-15 Release 5.9 accounting
fs(1)Ya 2008-12-18 5.12 accounting

Clone Sequence Records

LD26875.complete Sequence

2265 bp (2265 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069542

> LD26875.complete
TGTATGTCCATGTGTGTTAAGTTCGCAACTTGCGCATTTAATGTCGTTTT
CCAATGTCCTAATCATGCGACAGCCCGACGAGGGCAAGTGCCACATTTGC
AAGCGTGTCTTCTGTTGCGGCAAATGCCGCCAGAAGCATCAGTTCAAAGC
GCACGCCATTGCTGTGCGCGAGCCATTGGGATTGAGGTCTGCCGGCGGCG
GTATCATCGAGCATCGCCATCAAATGGAGTCCGGCGCGACCACCATCTAT
GTGTTCTGTCCGATCTGCGAGCGGCGTCCCCTGCTGCTGCGCGAGGAGAT
GCACGGCGAGCTGCTGGCCCACATCGAGACCTGCCACCTGCCGCTGCGAT
GCCGCAAGTGCCAGCGCAACTACACGCGCGTCGATGACCTGCGGGAGTTC
AGCAAGTGCGTGGACCAGCAGCAGAGCTGCACTGATGTCACCGGCGCCAC
GGAGACATCGAAGGCGACGCTAAAGAAGGCAGCGAATAGCACCGCCATTT
CAACGCAAACGTCGCCGTCCGTAACGCCCATTTCACTGATCAACATGCGC
TGGAAGGCCAAGAGCCGTGTCACCCACGAGGAGTTCATCAGCGACAGCGT
CTCCTCCATACGCAACCTGTCGTCGTTCAGCAACAGCTCCATTCGTCGCT
CCATTGGCCAACTGGGCGTGAATCCGTCCGAAACGATGGAGAAGGGCAAG
GTCATACGCTCGACGTCCACACCACTGCACGTGGAGTCCGTGTTCGCCAA
GCCCAAGGAGCCGATTACCTTCAATGCTTCCACTGGCGGCCACGTGTCCA
GCATCTACCACGAGGAGCCCAGTCCGACACCCGAAAGCAATCCCGTCCAG
CAGCAGCAGCAGCAGCAGCAGCCGTTGCAGCAGCGCGCCTGGAAAATGGG
CGCCCGCAACAAGATGAGCGCCGCAACGCCGCTGCGCCAGGTCATGTCCA
AGAGCATTCAGAAGGCCTTCGTCGAGCACGGCGGCATGATGGTCCACCAG
CCACCATCCGCAGTGGTGCAACGTCGCGTGCGCCTCGATCTCAGCGAGCA
CAGTTCGCACGAGGCAGCAGGCTCGTCCGCTCTGGACCTGCGACTCTCGC
CAGCTATGCGGCGCACCCAGAGCGAGTCCAGCGCCTCGGAGGTCAACAGC
GGCAGCAGCTCCAGCTACAGCACCTCGCGGAATGCCGATCTATGCAAGCG
GCAGTTCTTGCTGTCCGCACAGAAACTCACCACCGAGTCGATCATCATCA
CGCGGACGAACTCCAGCTCACAGAAGACCTCTTCCACGGTGTACAACTCA
TGCGAGAGCGTCGAGATCATACGCTCCACCTCGGAATCAGCGGAAGTGTG
CCACGTGCCGGCCATAACGCCCATCCGTGTCACCGGTGCCGGCATCAACA
AGAAGCAGATCAAGTTCGAGACGCCGCCCAAGAGCAGCCAACAGATGCGA
TCGAATGGCGAGGGCGATGAAACCAAGGACCAGTTTTTCACGCCGGAACC
GGGAACGCCGGAAATTCCAGAGCGTCGTCATCGCCAGGCGATTGTGCCGC
GCCAGCTGAGCGGCGAGTTTTCGCCCAAGAAGGATAAGCCGAAGGAGAAG
GGGCTGGCGGTGATGGCCCTGATCTCGCCGCCATTGCAGCAACCCAGGGT
GCGTCCTCCGTTGCGGGAATGCCGTCAGCAGAGGGTCTATAGCGGCGTGC
AGGATGTGGGCGAGCCGGAGGTCGTGGACGCAGAAGAGGAGGACGAGGTG
TTCCGCCCCACAAACGCCTCCACGTGCAACGACAAAAAGCTGGAGGCGCC
CAACTCCGGTCGCCTGTGGTCGCTGATGAGTTCCATGATGCGACTGCCGG
CCAGCTTGCGCGGCGAACGCGAAAAGGACAGGGACAGGGACAGGGATTCG
GATAAGGAGAACGCTGGTTCGGGCTCACTCATCCGTCGCTGCGCCTCCAT
CGCTGGATCCCTGGTGCGCCCCAGTGCAAGGGACTCCTCCATGGAGGACC
AGCAGTGCCTCAAGAGAAAGCGCACTCAGACGCTGGACAGCCAGTACTGT
AGCCCGCTGTCGCCGTCCAGCTCCTCGAAGCGCTACCGCATCCGGCCCAG
GGAGCCCATCGAGCGCATGCGTCGCCAGTAGGTTTTAAGCTTTTGCCTGC
GAATCTGTGTTTTAATTGTGAAATTCTTCTTTTTTTTTATCGTTTAATAA
ATGTTTGGTCTTGCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

LD26875.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)Ya-RA 2331 fs(1)Ya-RA 67..2285 1..2219 11095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2618257..2620393 81..2217 10685 100 Plus
chrX 22417052 chrX 2618120..2618202 1..83 415 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2724441..2726579 81..2219 10695 100 Plus
X 23542271 X 2724304..2724386 1..83 415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2732539..2734677 81..2219 10695 100 Plus
X 23527363 X 2732402..2732484 1..83 415 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:06:26 has no hits.

LD26875.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:07:09 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2618120..2618201 1..82 100 -> Plus
chrX 2618259..2620393 83..2217 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:57 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 1..2091 41..2131 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:51 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 1..2091 41..2131 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:48 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 1..2091 41..2131 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:08 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 1..2091 41..2131 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:59 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 1..2091 41..2131 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:56 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 19..2235 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:51 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 19..2235 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:48 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 19..2235 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:09 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 19..2235 1..2217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:59 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
fs(1)Ya-RA 19..2235 1..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:09 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
X 2724304..2724385 1..82 100 -> Plus
X 2724443..2726577 83..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:09 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
X 2724304..2724385 1..82 100 -> Plus
X 2724443..2726577 83..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:09 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
X 2724304..2724385 1..82 100 -> Plus
X 2724443..2726577 83..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:48 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2618337..2618418 1..82 100 -> Plus
arm_X 2618476..2620610 83..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:33 Download gff for LD26875.complete
Subject Subject Range Query Range Percent Splice Strand
X 2732541..2734675 83..2217 100   Plus
X 2732402..2732483 1..82 100 -> Plus

LD26875.hyp Sequence

Translation from 0 to 2130

> LD26875.hyp
VCPCVLSSQLAHLMSFSNVLIMRQPDEGKCHICKRVFCCGKCRQKHQFKA
HAIAVREPLGLRSAGGGIIEHRHQMESGATTIYVFCPICERRPLLLREEM
HGELLAHIETCHLPLRCRKCQRNYTRVDDLREFSKCVDQQQSCTDVTGAT
ETSKATLKKAANSTAISTQTSPSVTPISLINMRWKAKSRVTHEEFISDSV
SSIRNLSSFSNSSIRRSIGQLGVNPSETMEKGKVIRSTSTPLHVESVFAK
PKEPITFNASTGGHVSSIYHEEPSPTPESNPVQQQQQQQQPLQQRAWKMG
ARNKMSAATPLRQVMSKSIQKAFVEHGGMMVHQPPSAVVQRRVRLDLSEH
SSHEAAGSSALDLRLSPAMRRTQSESSASEVNSGSSSSYSTSRNADLCKR
QFLLSAQKLTTESIIITRTNSSSQKTSSTVYNSCESVEIIRSTSESAEVC
HVPAITPIRVTGAGINKKQIKFETPPKSSQQMRSNGEGDETKDQFFTPEP
GTPEIPERRHRQAIVPRQLSGEFSPKKDKPKEKGLAVMALISPPLQQPRV
RPPLRECRQQRVYSGVQDVGEPEVVDAEEEDEVFRPTNASTCNDKKLEAP
NSGRLWSLMSSMMRLPASLRGEREKDRDRDRDSDKENAGSGSLIRRCASI
AGSLVRPSARDSSMEDQQCLKRKRTQTLDSQYCSPLSPSSSSKRYRIRPR
EPIERMRRQ*

LD26875.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)Ya-PA 696 CG2707-PA 1..696 14..709 3582 100 Plus

LD26875.pep Sequence

Translation from 40 to 2130

> LD26875.pep
MSFSNVLIMRQPDEGKCHICKRVFCCGKCRQKHQFKAHAIAVREPLGLRS
AGGGIIEHRHQMESGATTIYVFCPICERRPLLLREEMHGELLAHIETCHL
PLRCRKCQRNYTRVDDLREFSKCVDQQQSCTDVTGATETSKATLKKAANS
TAISTQTSPSVTPISLINMRWKAKSRVTHEEFISDSVSSIRNLSSFSNSS
IRRSIGQLGVNPSETMEKGKVIRSTSTPLHVESVFAKPKEPITFNASTGG
HVSSIYHEEPSPTPESNPVQQQQQQQQPLQQRAWKMGARNKMSAATPLRQ
VMSKSIQKAFVEHGGMMVHQPPSAVVQRRVRLDLSEHSSHEAAGSSALDL
RLSPAMRRTQSESSASEVNSGSSSSYSTSRNADLCKRQFLLSAQKLTTES
IIITRTNSSSQKTSSTVYNSCESVEIIRSTSESAEVCHVPAITPIRVTGA
GINKKQIKFETPPKSSQQMRSNGEGDETKDQFFTPEPGTPEIPERRHRQA
IVPRQLSGEFSPKKDKPKEKGLAVMALISPPLQQPRVRPPLRECRQQRVY
SGVQDVGEPEVVDAEEEDEVFRPTNASTCNDKKLEAPNSGRLWSLMSSMM
RLPASLRGEREKDRDRDRDSDKENAGSGSLIRRCASIAGSLVRPSARDSS
MEDQQCLKRKRTQTLDSQYCSPLSPSSSSKRYRIRPREPIERMRRQ*

LD26875.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22453-PA 703 GF22453-PA 1..701 1..694 2051 66.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18625-PA 707 GG18625-PA 1..707 1..696 3109 89.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12381-PA 728 GH12381-PA 1..726 7..694 1494 49.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
fs(1)Ya-PA 696 CG2707-PA 1..696 1..696 3582 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15874-PA 729 GI15874-PA 2..727 16..694 1617 52 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19916-PA 528 GL19916-PA 1..472 9..476 1544 67.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15438-PA 679 GA15438-PA 1..678 9..695 2070 65.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19245-PA 679 GM19245-PA 1..679 1..696 3115 92.5 Plus
Dsec\GM16933-PA 575 GM16933-PA 1..575 119..696 2885 96.2 Plus
Dsec\GM11046-PA 95 GM11046-PA 1..95 600..696 456 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24737-PA 899 GD24737-PA 286..899 79..696 3075 95.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18701-PA 752 GJ18701-PA 25..751 12..695 1656 51.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25598-PA 728 GK25598-PA 7..725 5..694 1481 51.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16278-PA 713 GE16278-PA 1..713 1..696 3077 88 Plus