Clone LD26912 Report

Search the DGRC for LD26912

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:269
Well:12
Vector:pOT2
Associated Gene/TranscriptIntS9-RA
Protein status:LD26912.pep: gold
Preliminary Size:2107
Sequenced Size:2086

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5222 2001-01-01 Release 2 assignment
CG5222 2001-09-19 Blastp of sequenced clone
CG5222 2003-01-01 Sim4 clustering to Release 3
CG5222 2008-04-29 Release 5.5 accounting
CG5222 2008-08-15 Release 5.9 accounting
CG5222 2008-12-18 5.12 accounting

Clone Sequence Records

LD26912.complete Sequence

2086 bp (2086 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058574

> LD26912.complete
CAAACTTGCATCGTCTAATCGGCACTGTCGGTTTAATAAAATGCGATTGT
ATTGTCTCAGCGGGGACCTGGCCAAGCCATGTTATATCATTACCTTCAAG
GGCCTGCGGATTATGCTGGACTGCGGTCTCACGGAGCAGACAGTCCTGAA
TTTCCTTCCGCTGCCCTTCGTTCAGTCACTGAAGTGGTCCAATCTGCCCA
ACTTCGTGCCCAGTCGGGATCATGATCCCCAAATGGATGGCGAGTTGAAG
GACTGCTGTGGCCGGGTTTTCGTGGACTCGACGCCCGAGTTTAATCTACC
CATGGACAAAATGCTGGATTTCAGCGAAGTGGATGTGATACTTATCTCGA
ATTATCTTAATATGCTGGCCTTGCCGTATATCACGGAAAACACGGGGTTC
AAGGGCAAAGTCTATGCCACGGAGCCAACGCTGCAGATCGGCCGATTTTT
CCTGGAGGAGCTGGTGGACTATATCGAAGTGTCGCCCAAGGCGTGCACCG
CGCGCTTGTGGAAGGAGAAGCTTCATCTGCTGCCCAGTCCCTTGAGCGAA
GCCTTTCGCGCCAAGAAGTGGCGCACTATCTTTAGTCTTAAGGATGTCCA
AGGCAGTCTGTCCAAGGTGACCATCATGGGCTACGACGAGAAGCTGGACA
TCCTCGGAGCTTTTATCGCCACTCCTGTCAGCTCGGGCTACTGCCTGGGC
TCGAGCAACTGGGTACTGAGCACGGCGCATGAAAAGATTTGCTATGTCAG
TGGTTCCTCCACGTTGACCACACATCCGCGGCCCATCAATCAGTCGGCGC
TGAAGCACGCCGATGTACTCATTATGACCGGACTGACGCAGGCGCCGACG
GTAAATCCGGACACGAAGCTGGGCGAGCTCTGCATGAATGTGGCCTTGAC
GATCCGCAACAATGGGTCTGCCTTGATTCCCTGTTATCCTTCGGGCGTTG
TCTATGACCTCTTTGAGTGCCTCACCCAGAATTTGGAAAACGCTGGCCTA
AACAATGTTCCCATGTTCTTTATTTCCCCTGTGGCAGACAGCTCCTTGGC
GTATTCTAATATCCTGGCCGAGTGGCTTAGTTCCGCCAAGCAGAACAAAG
TGTATCTTCCAGACGATCCTTTCCCACATGCCTTTTACCTTCGCAACAAC
AAGCTGAAGCACTATAACCATGTGTTCTCCGAGGGCTTTAGCAAGGACTT
CCGGCAGCCCTGCGTGGTCTTTTGTGGCCATCCTAGCTTGCGTTTCGGCG
ACGCTGTTCACTTTATCGAGATGTGGGGCAATAACCCTAACAACTCCATC
ATATTCACGGAGCCGGACTTTCCGTATCTGCAAGTACTGGCGCCCTTCCA
ACCACTGGCCATGAAGGCTTTTTACTGTCCCATCGACACCTCTTTGAATT
ATCAGCAGGCAAATAAGCTGATCAAGGAGTTGAAACCAAATGTGCTTGTC
ATCCCAGAGGCATACACAAAACCACATCCCTCGGCCCCAAATTTGTTCAT
TGAACAGCCGGATAAGAAGATAATAACGTTCAAGTGCGGCGAGATCATAC
GTCTGCCATTAAAACGGAAGCTGGATCGAATTTACATTACCTCGGAACTG
GCCCAAAAGATATCGCCAAAGGAGGTGGCGGCCGGCGTGACCTTCTCCAC
ATTGACAGGAGTTTTGCAAGTTAAGGACAAGGTCCACTGCATCCAGCCAT
GTGCGGATAGCGTTAAAGACGAGACCATCTCGAGCAACAGCGCTCCGACA
AAGGAGGATGTGCTGAAGAACGTCAAATACGAGTATGGCAGCATTGATGT
AGATGCAGTGATGAAGAAGCTGGCACAGGATGGCTTCTCCAACATCAAGC
TAGACCGCACTGGCGGCGCTCTGACTCTGAACCTTGTCAATGAGGACACA
GTCATTAAGTTCGAGGACAACGAGACGCATATTATCTGCGGCGGAAAGCC
AACAACCCGGCTCAAGCTGCGAGACACCATCATGAAATGCTTACAGAGTT
TTTAAAAACATAAATGTATTCCTTACACCTAAATAACAACACATCATTAC
GCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD26912.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5222-RA 2086 CG5222-RA 33..2086 1..2054 10270 100 Plus
CG5414-RB 2908 CG5414-RB 2857..2908 2055..2004 260 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16094107..16095265 1207..49 5780 99.9 Minus
chr3L 24539361 chr3L 16093203..16094052 2054..1205 4205 99.6 Minus
chr3L 24539361 chr3L 16095326..16095374 49..1 245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16104336..16105494 1207..49 5795 100 Minus
3L 28110227 3L 16103431..16104281 2055..1205 4255 100 Minus
3L 28110227 3L 16105555..16105603 49..1 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16097436..16098594 1207..49 5795 100 Minus
3L 28103327 3L 16096531..16097381 2055..1205 4255 100 Minus
3L 28103327 3L 16098655..16098703 49..1 245 100 Minus
Blast to na_te.dros performed 2019-03-16 11:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10700..10873 277..109 128 57.6 Minus

LD26912.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:31:39 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16093203..16094049 1208..2054 99 <- Minus
chr3L 16094107..16095264 50..1207 99 <- Minus
chr3L 16095326..16095374 1..49 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:59 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5222-RA 1..1965 41..2005 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:44 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5222-RA 1..1965 41..2005 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:27:54 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
IntS9-RA 1..1965 41..2005 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:18:56 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5222-RA 1..1965 41..2005 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:08 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
IntS9-RA 1..1965 41..2005 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:28 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5222-RA 9..2062 1..2054 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:44 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5222-RA 9..2062 1..2054 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:27:54 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
IntS9-RA 25..2078 1..2054 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:18:56 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
CG5222-RA 9..2062 1..2054 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:08 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
IntS9-RA 25..2078 1..2054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:39 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16103432..16104278 1208..2054 100 <- Minus
3L 16104336..16105493 50..1207 100 <- Minus
3L 16105555..16105603 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:39 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16103432..16104278 1208..2054 100 <- Minus
3L 16104336..16105493 50..1207 100 <- Minus
3L 16105555..16105603 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:39 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16103432..16104278 1208..2054 100 <- Minus
3L 16104336..16105493 50..1207 100 <- Minus
3L 16105555..16105603 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:27:54 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16096532..16097378 1208..2054 100 <- Minus
arm_3L 16097436..16098593 50..1207 100 <- Minus
arm_3L 16098655..16098703 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:53:50 Download gff for LD26912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16096532..16097378 1208..2054 100 <- Minus
3L 16097436..16098593 50..1207 100 <- Minus
3L 16098655..16098703 1..49 100   Minus

LD26912.hyp Sequence

Translation from 0 to 2004

> LD26912.hyp
KLASSNRHCRFNKMRLYCLSGDLAKPCYIITFKGLRIMLDCGLTEQTVLN
FLPLPFVQSLKWSNLPNFVPSRDHDPQMDGELKDCCGRVFVDSTPEFNLP
MDKMLDFSEVDVILISNYLNMLALPYITENTGFKGKVYATEPTLQIGRFF
LEELVDYIEVSPKACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQ
GSLSKVTIMGYDEKLDILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVS
GSSTLTTHPRPINQSALKHADVLIMTGLTQAPTVNPDTKLGELCMNVALT
IRNNGSALIPCYPSGVVYDLFECLTQNLENAGLNNVPMFFISPVADSSLA
YSNILAEWLSSAKQNKVYLPDDPFPHAFYLRNNKLKHYNHVFSEGFSKDF
RQPCVVFCGHPSLRFGDAVHFIEMWGNNPNNSIIFTEPDFPYLQVLAPFQ
PLAMKAFYCPIDTSLNYQQANKLIKELKPNVLVIPEAYTKPHPSAPNLFI
EQPDKKIITFKCGEIIRLPLKRKLDRIYITSELAQKISPKEVAAGVTFST
LTGVLQVKDKVHCIQPCADSVKDETISSNSAPTKEDVLKNVKYEYGSIDV
DAVMKKLAQDGFSNIKLDRTGGALTLNLVNEDTVIKFEDNETHIICGGKP
TTRLKLRDTIMKCLQSF*

LD26912.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
IntS9-PA 654 CG5222-PA 1..654 14..667 3453 100 Plus
Cpsf73-PA 684 CG7698-PA 28..422 22..484 205 20.7 Plus
Cpsf100-PA 756 CG1957-PA 5..362 14..441 202 22.5 Plus

LD26912.pep Sequence

Translation from 40 to 2004

> LD26912.pep
MRLYCLSGDLAKPCYIITFKGLRIMLDCGLTEQTVLNFLPLPFVQSLKWS
NLPNFVPSRDHDPQMDGELKDCCGRVFVDSTPEFNLPMDKMLDFSEVDVI
LISNYLNMLALPYITENTGFKGKVYATEPTLQIGRFFLEELVDYIEVSPK
ACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDE
KLDILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVSGSSTLTTHPRPIN
QSALKHADVLIMTGLTQAPTVNPDTKLGELCMNVALTIRNNGSALIPCYP
SGVVYDLFECLTQNLENAGLNNVPMFFISPVADSSLAYSNILAEWLSSAK
QNKVYLPDDPFPHAFYLRNNKLKHYNHVFSEGFSKDFRQPCVVFCGHPSL
RFGDAVHFIEMWGNNPNNSIIFTEPDFPYLQVLAPFQPLAMKAFYCPIDT
SLNYQQANKLIKELKPNVLVIPEAYTKPHPSAPNLFIEQPDKKIITFKCG
EIIRLPLKRKLDRIYITSELAQKISPKEVAAGVTFSTLTGVLQVKDKVHC
IQPCADSVKDETISSNSAPTKEDVLKNVKYEYGSIDVDAVMKKLAQDGFS
NIKLDRTGGALTLNLVNEDTVIKFEDNETHIICGGKPTTRLKLRDTIMKC
LQSF*

LD26912.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10658-PA 655 GF10658-PA 1..655 1..654 3414 96.6 Plus
Dana\GF16269-PA 756 GF16269-PA 5..362 1..428 222 23 Plus
Dana\GF18101-PA 684 GF18101-PA 28..422 9..471 218 20.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13497-PA 654 GG13497-PA 1..654 1..654 3476 98.8 Plus
Dere\GG11633-PA 756 GG11633-PA 5..362 1..428 224 22.7 Plus
Dere\GG16362-PA 684 GG16362-PA 28..422 9..471 215 20.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14706-PA 657 GH14706-PA 1..657 1..654 3316 93.9 Plus
Dgri\GH10247-PA 754 GH10247-PA 5..362 1..428 242 24 Plus
Dgri\GH19212-PA 686 GH19212-PA 30..424 9..471 228 20.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
IntS9-PA 654 CG5222-PA 1..654 1..654 3453 100 Plus
Cpsf73-PA 684 CG7698-PA 28..422 9..471 205 20.7 Plus
Cpsf100-PA 756 CG1957-PA 5..362 1..428 202 22.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12252-PA 659 GI12252-PA 1..659 1..654 3353 94.2 Plus
Dmoj\GI23051-PA 754 GI23051-PA 5..362 1..428 243 24.5 Plus
Dmoj\GI24246-PA 686 GI24246-PA 30..424 9..471 221 20.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25097-PA 657 GL25097-PA 1..657 1..654 3316 93.8 Plus
Dper\GL23169-PA 684 GL23169-PA 28..422 9..471 214 20.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18747-PA 657 GA18747-PA 1..657 1..654 3316 93.8 Plus
Dpse\GA26549-PA 731 GA26549-PA 5..362 1..428 221 23.4 Plus
Dpse\GA20526-PA 684 GA20526-PA 28..422 9..471 214 20.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24446-PA 654 GM24446-PA 1..654 1..654 3486 99.4 Plus
Dsec\GM12754-PA 743 GM12754-PA 5..362 1..428 225 22.7 Plus
Dsec\GM18692-PA 684 GM18692-PA 28..422 9..471 215 20.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12515-PA 654 GD12515-PA 1..654 1..654 3482 99.1 Plus
Dsim\GD20157-PA 684 GD20157-PA 28..422 9..471 215 20.7 Plus
Dsim\GD21403-PA 664 GD21403-PA 21..270 180..428 176 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11484-PA 658 GJ11484-PA 1..658 1..654 3343 94.1 Plus
Dvir\GJ24636-PA 693 GJ24636-PA 5..362 1..428 237 24 Plus
Dvir\GJ10819-PA 686 GJ10819-PA 30..424 9..471 221 20.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23916-PA 659 GK23916-PA 1..659 1..654 3342 94.1 Plus
Dwil\GK13096-PA 684 GK13096-PA 28..422 9..471 218 20.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19796-PA 654 GE19796-PA 1..654 1..654 3486 99.2 Plus
Dyak\GE22809-PA 654 GE22809-PA 1..654 1..654 3484 99.1 Plus
Dyak\GE26465-PA 756 GE23822-PA 5..362 1..428 224 22.7 Plus
Dyak\GE26465-PB 548 GE26465-PB 5..362 1..428 222 22.7 Plus
Dyak\GE25184-PA 684 GE25184-PA 28..422 9..471 215 20.7 Plus