Clone LD26976 Report

Search the DGRC for LD26976

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:269
Well:76
Vector:pOT2
Associated Gene/TranscriptHmgs-RB
Protein status:LD26976.pep: gold
Preliminary Size:2707
Sequenced Size:2588

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4311 2001-01-01 Release 2 assignment
CG4311 2001-07-04 Blastp of sequenced clone
CG4311 2003-01-01 Sim4 clustering to Release 3
Hmgs 2008-04-29 Release 5.5 accounting
Hmgs 2008-08-15 Release 5.9 accounting
Hmgs 2008-12-18 5.12 accounting

Clone Sequence Records

LD26976.complete Sequence

2588 bp (2588 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051743

> LD26976.complete
ATTTTCCGCTGCTCACGGGTTTTTCATTTAAGCACAAAAACCAAAACACT
TTTCGCACATTTTCCCGACTCCCCGCCCCCAGCCCACACGATCATCAGCT
GGATATTTCCAGATACATCCGCAGACCTCGCGGCAATCTGCCGTCGAACG
AAACGCAACAAACTGGCGAACTCTTTTTTTCAGGGTCACACTGCTTCGAC
AAAAAATCATAGCCACATTGCAAAAACTAATTTTCTCACTATCTTCAATA
ATCTACAAGAGATTTGCGCACTTTTCCTGGTCAGCAGACCTACTGCGATG
TAGTAATCGGTCTTTTTTTTCGGCGGGGGGTAACTTTTGCACTTTTCACG
GCGACGTGGAAAACCCGCCGAATTAACTATTTCTTACGGTTGGCACTTAC
TTTTCAGCGAATATGGTTGATTGTAAACGAAGCAGGTGTGCTTTTTGTGC
TATTTGAAAACAGCAAGTGCGTTTTTCTTTGCCAAAAAATCAGCGCAAAT
CGACCGCCGCCACCCACAAATGCGAACGAAATTGTGTGGTGAGAAAAGCG
CTGGCGAAAAAAGTGACAGTTCACAATGCCCACGAGATTCACGTGATGGC
GCCAGTGTTGCTTAGCCAGCGAGCCAAACAGCTGACTCCGCCAGCAGCTG
TTCCAGCGCCGCGCGCTCTCCAACACTGCCTGCGGCTAAGGTGCCGCAGT
TTCATTGCTTAATTTTATTCCAGATTAGTTTAGTTTAAAACATATCGCCC
GCCCTGGACCATTAATATTAGCAAAGCTCAGGATTAAATAGATAACCGGA
TACAATCATGGCATCCCACTGGCCCGAGAACGTTGGCATACGCGCCATCG
AGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTGGAGACCTTC
GATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCAGGCCAAGAT
GGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCCTGACGGTTG
TGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAGATCGGACGA
CTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTCGGTGAAGTC
CGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACATCGAGGGCA
TCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTCTTCAATGCC
GTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGCTTTGGCCGT
TTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCCCAACTGGTG
GTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCGCTTATCCTC
GATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGACTTTTACAA
GCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGCTCTCTATTC
AGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTATCGCAAGAAG
TTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAGCCTGAGCAC
CTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGGTGCAAAAAT
CTGTGGGTCGCCTGAGCTTCAACGATTTCCTGCTGAGCAGTGAGGAGGAG
CGAACGAAGCAGTTTCCCGACCTGGAACGTTTTAATACCGCTACCCTGGA
GAGCACCTACTTTGATCGCGATGTGGAGAAGGCCTTCATGACGCAGTCCG
CCAACATCTTTGCCAGCAAGACCAAGAAATCGCTGCTGCTGGCCAACCAA
GTGGGCAATATGTACACACCCTCGGTGTACTCCGGTTTGGTGTCTCTGTT
GATTAGCGGACCAGCCCAGGAGCTGGTGGGAAAGCGCATTGGTTTGTTCT
CCTACGGATCCGGACTGGCTGCTTCCATGTACTCGATCAGCGTGACCCAG
GATGCAGCTGCTTTCGAAAAGTTCGTCTCGCAGCTGGACTACGTGCAGCC
GTTGCTGAATTCACGGGAGAAGGTTGCGCCCGAGCAGTTCTCCGCGCTGA
TGGAGGTGCGGGAGAAGAACAACCATGCGGCGCCCTACACGCCAACGGGC
AGCATCTCCGCACTGTTTCCCGGCACCTACTACCTGAAGGACGTGGATGC
GCTGCATAGACGCACCTACGAGCGCACACCGACCATCAGCAATGGGGTGC
ACTAACCCCGGGCTATGGTTCCTTCGGTTTGGTTTCGGTTTCGCCTACAA
CTTGACAATAACTCTAACTCTCTCGACCAAACCCATGTAAGCAGTAGCTG
TAGATGGTATCTATTTATAACTGGTATGATCCCGAGGGGTCGCTATCCTT
TTTGCTCTTATTCGGGTCCTTGTCGCGTATATAGTACTACACTTCTTATT
TATACAAGCTTGCGAATTAACTCTTTCATCCAGTCAGACCTTATTTATAT
CATGGAACAAGTCTTAACTAGCGTCGGTACTGCAATCTATGCCTATAATT
GTACAATACTTATACCTGTGTGTAATGCACACAATCAATTGTTTAATAAA
CAATAAAAATCAACAAAGTCAAAAAAAAAAAAAAAAAA

LD26976.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RA 2589 Hmgs-RA 7..2579 1..2573 12865 100 Plus
Hmgs.a 1870 Hmgs.a 60..1860 773..2573 9005 100 Plus
Hmgs-RB 1927 Hmgs-RB 115..1917 771..2573 9000 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12226747..12228542 775..2570 8980 100 Plus
chr2R 21145070 chr2R 12223392..12224165 1..774 3855 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339447..16341245 775..2573 8995 100 Plus
2R 25286936 2R 16336090..16336863 1..774 3870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16340646..16342444 775..2573 8995 100 Plus
2R 25260384 2R 16337289..16338062 1..774 3870 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:30:42 has no hits.

LD26976.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:31:44 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12223392..12224165 1..774 99 -> Plus
chr2R 12226747..12228542 775..2570 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:03 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 1..1398 808..2205 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:49 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 1..1398 808..2205 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:28:34 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 1..1398 808..2205 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:28 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 1..1398 808..2205 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:21 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 1..1398 808..2205 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:21 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RA 1..2570 1..2570 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:48 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RA 1..2570 1..2570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:28:34 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RA 1..2570 1..2570 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:29 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RA 1..2570 1..2570 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:21 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RA 1..2570 1..2570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:44 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16336090..16336863 1..774 100 -> Plus
2R 16339447..16341242 775..2570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:44 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16336090..16336863 1..774 100 -> Plus
2R 16339447..16341242 775..2570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:31:44 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16336090..16336863 1..774 100 -> Plus
2R 16339447..16341242 775..2570 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:28:34 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12223595..12224368 1..774 100 -> Plus
arm_2R 12226952..12228747 775..2570 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:59 Download gff for LD26976.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16337289..16338062 1..774 100 -> Plus
2R 16340646..16342441 775..2570 100   Plus

LD26976.hyp Sequence

Translation from 807 to 2204

> LD26976.hyp
MASHWPENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGF
CSDREDVNSLCLTVVSRLLERQHVKHSEIGRLEVGTETIVDKSKSVKSVL
MQLFAESGNTDIEGIDTTNACYGGTAALFNAVNWVESSSWDGRLALAVCA
DIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLRATHMEHAYDFYKPD
LSSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASLSTFD
AILFHTPFCKLVQKSVGRLSFNDFLLSSEEERTKQFPDLERFNTATLEST
YFDRDVEKAFMTQSANIFASKTKKSLLLANQVGNMYTPSVYSGLVSLLIS
GPAQELVGKRIGLFSYGSGLAASMYSISVTQDAAAFEKFVSQLDYVQPLL
NSREKVAPEQFSALMEVREKNNHAAPYTPTGSISALFPGTYYLKDVDALH
RRTYERTPTISNGVH*

LD26976.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-PF 465 CG4311-PF 1..465 1..465 2386 100 Plus
Hmgs-PE 465 CG4311-PE 1..465 1..465 2386 100 Plus
Hmgs-PD 465 CG4311-PD 1..465 1..465 2386 100 Plus
Hmgs-PB 465 CG4311-PB 1..465 1..465 2386 100 Plus
Hmgs-PC 465 CG4311-PC 1..465 1..465 2386 100 Plus

LD26976.pep Sequence

Translation from 807 to 2204

> LD26976.pep
MASHWPENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGF
CSDREDVNSLCLTVVSRLLERQHVKHSEIGRLEVGTETIVDKSKSVKSVL
MQLFAESGNTDIEGIDTTNACYGGTAALFNAVNWVESSSWDGRLALAVCA
DIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLRATHMEHAYDFYKPD
LSSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASLSTFD
AILFHTPFCKLVQKSVGRLSFNDFLLSSEEERTKQFPDLERFNTATLEST
YFDRDVEKAFMTQSANIFASKTKKSLLLANQVGNMYTPSVYSGLVSLLIS
GPAQELVGKRIGLFSYGSGLAASMYSISVTQDAAAFEKFVSQLDYVQPLL
NSREKVAPEQFSALMEVREKNNHAAPYTPTGSISALFPGTYYLKDVDALH
RRTYERTPTISNGVH*

LD26976.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13593-PA 463 GF13593-PA 1..463 1..465 2323 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20599-PA 465 GG20599-PA 1..465 1..465 2429 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19963-PA 463 GH19963-PA 1..463 1..465 2218 87.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-PF 465 CG4311-PF 1..465 1..465 2386 100 Plus
Hmgs-PE 465 CG4311-PE 1..465 1..465 2386 100 Plus
Hmgs-PD 465 CG4311-PD 1..465 1..465 2386 100 Plus
Hmgs-PB 465 CG4311-PB 1..465 1..465 2386 100 Plus
Hmgs-PC 465 CG4311-PC 1..465 1..465 2386 100 Plus
Hmgs-PA 465 CG4311-PA 1..465 1..465 2386 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19921-PA 465 GI19921-PA 1..465 1..465 2217 87.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10732-PA 465 GL10732-PA 1..465 1..465 2259 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18098-PA 465 GA18098-PA 1..465 1..465 2255 88.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21690-PA 465 GM21690-PA 1..465 1..465 2458 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hmgs-PA 246 GD11187-PA 71..246 288..465 815 88.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15089-PA 464 GJ15089-PA 1..464 1..465 2205 86.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21611-PA 466 GK21611-PA 5..466 3..465 2186 86.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11785-PA 465 GE11785-PA 1..465 1..465 2449 97.6 Plus
Dyak\GE11019-PA 105 GE11019-PA 1..105 311..465 445 63.2 Plus