Clone LD26982 Report

Search the DGRC for LD26982

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:269
Well:82
Vector:pOT2
Associated Gene/TranscriptIntS14-RA
Protein status:LD26982.pep: gold
Preliminary Size:1850
Sequenced Size:1917

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4785 2001-01-01 Release 2 assignment
CG4785 2002-05-17 Blastp of sequenced clone
CG4785 2003-01-01 Sim4 clustering to Release 3
CG4785 2008-04-29 Release 5.5 accounting
CG4785 2008-08-15 Release 5.9 accounting
CG4785 2008-12-18 5.12 accounting

Clone Sequence Records

LD26982.complete Sequence

1917 bp (1917 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118537

> LD26982.complete
AAGATGCATAAATAACAAAAATTGGAGAAAACATAAATAAAGCGCTGAAT
AAATTTAATTAAGCTACGAAATGCCCACCTTAATAGCGCTGGATGCATCG
CTATCGATGCTGCGCCCGGTGCCGGGAAGAAATGAGCACACCTACCAGTC
GCTGGCCACCAAGGGCATCCAGCATCTGCTGGACAATCTCACGGCGGCCG
GCAAATTGGAGCACGTTGCTCTGCTCTCCTATTCGACGACGGCGGAACTG
AAGGTGGACTTCACGCGGGACTACGACCAGGTGCGGCAGGCGGTCAAGAA
GGTGGAGCCCGTGGACAAGGCCTGCCTGATGAGCATGCTCAAGGCGGTGG
TGTCCATAATGTCGCCGTGGGGCAACCAGAACATCCTGCAGGTGGTTGTC
TTTACGGACTGCGGCCTCGGCTTTGGCAACACCTCGATCACGGGCTTCCT
GGAGGCCTACGCCGAAAAGGAGTCGGAGCCGGAGTTCGGCTTCCTGAAGA
CTCTGGCCAACTACAACCTGAATTTCATCTGCCTGGGCCTGCACGGCGAT
TACTACTTCACCAGGGGATTGGCGGTGTACCAGCAGCTGCTGGACAAGGT
CTCACTGAAGGGCCAGCTCTTCATGACAAAGCCCGCCAAGAGCAGCGATG
CAGTCGAGGGAAATCCCAATCCCAACCCGAACCCCAGCCACAAAAGCGAA
CTGGGCCGCACTACGGTCTTCGAACTAATTGAACGTCTCTGCGAGGCCAG
CTACAAGAGTTCGGAGGTGACCCTGAAATGCGGCAGCTACTTCCGCATGG
AGGCATCTGTTCTGCTCTGGCCACCGACGGCTCCGTATGAGCAAAAGTCC
CACATATTCGGCCGAGAACCCACCATTCGCCACACAGACCAGAAGATTGA
GGTGTGTGGCTTCCTGTCCCTTTCGGACATTGGATCACCGGCCACCCTGA
GTCGACACTGGGTGCTGCCCAAAGTGGAGCGGGAGAAGAGCGGCAGCAGT
CGGAGGTCTGGAAACCTGAGCGCAGCAGCCAAGCCACCGAAGCTCAATCT
AGATACCAGCAATCCCAACTACGAGCTGGAGAAGCTGGAAGCCGATATCA
AAGAGTTTTACGCCAAGGATTCAAAAGACACGGAGGAAAGTGGCGACGAC
GATGTGACCATTGTCTTGAAACCCGGCCCCCAGACAGAGCAACAAAAAGA
AAACTTGTGCGTCCTCCTTCACGGAGCCCTCAAAATGGAGAACATGGCAG
CTCTGGTTCGAGTGGGTGACAAGTGGTACGGATTCATATATGCATTCACC
GACAGCAAGAAGAAGTCAAACCTGATGCTGAACATACTTCCACCCGGCAC
GAACGTGATTCCCTGGCTAGGAGACCTGGAATCGCTGGGCTTCCCCGAGG
ATTTGGCGCCCGGAGAGACGGCCAGTTTTCCGGTGCGTGCCGACCGCAGA
TCTTATTCGCAGAGCAGTGTGGTGTGGATACGACAGGCTAGCCTGCAGTC
CGACGTCCAGAAGGTACTGCGACACGCCAAGAAGATGCCCGACAAGACGC
AGCACTTCTACAAGGAGCTCAATCGCATCCGCCGCGCTGCCCTGGCGCTG
GGATTCGTCGAGTTGCTGGAGGCTTTGGCCATGCTGCTGGAGAAGGAGTG
CGCCCATCTCAGCCTGAACGGAGCCAGCAACGACTGCACCCTGCAGCTGC
AGCACGCGGCTACGGAGTTGCGGAAGACCTCGAACAGAGACATGAAGTCC
ATGATTGTTCCGCTCCAGAAAGTTGGTGCATCGGATGCGGGCAGCACGGC
TGCCACGGCTCCTGCTCCTGCATACATGTATTGAAAATTTTTTATGTCCT
TACTTTAAGACTGTGTTTACTTTGTAATACAAATAATCGTAAAAATTTAA
AAAAAAAAAAAAAAAAA

LD26982.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4785-RA 1931 CG4785-RA 5..1905 1..1901 9505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1165065..1166352 611..1898 6230 98.9 Plus
chr2L 23010047 chr2L 1164397..1165008 1..612 3060 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1165138..1166428 611..1901 6455 100 Plus
2L 23513712 2L 1164470..1165081 1..612 3060 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1165138..1166428 611..1901 6455 100 Plus
2L 23513712 2L 1164470..1165081 1..612 3060 100 Plus
Blast to na_te.dros performed 2019-03-16 00:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 892..1008 1590..1708 121 58 Plus

LD26982.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:56:55 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1164397..1165007 1..611 100 -> Plus
chr2L 1165066..1166352 612..1898 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:04 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1764 71..1834 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:55 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1764 71..1834 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:00:07 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1764 71..1834 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:27 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1764 71..1834 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:17:43 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
IntS14-RA 1..1764 71..1834 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:42 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1898 1..1898 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:55 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1898 1..1898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:00:07 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 28..1925 1..1898 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:28 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4785-RA 1..1898 1..1898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:17:43 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
IntS14-RA 28..1925 1..1898 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:55 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1164470..1165080 1..611 100 -> Plus
2L 1165139..1166425 612..1898 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:55 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1164470..1165080 1..611 100 -> Plus
2L 1165139..1166425 612..1898 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:55 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1164470..1165080 1..611 100 -> Plus
2L 1165139..1166425 612..1898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:00:07 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1164470..1165080 1..611 100 -> Plus
arm_2L 1165139..1166425 612..1898 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:46 Download gff for LD26982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1164470..1165080 1..611 100 -> Plus
2L 1165139..1166425 612..1898 100   Plus

LD26982.pep Sequence

Translation from 70 to 1833

> LD26982.pep
MPTLIALDASLSMLRPVPGRNEHTYQSLATKGIQHLLDNLTAAGKLEHVA
LLSYSTTAELKVDFTRDYDQVRQAVKKVEPVDKACLMSMLKAVVSIMSPW
GNQNILQVVVFTDCGLGFGNTSITGFLEAYAEKESEPEFGFLKTLANYNL
NFICLGLHGDYYFTRGLAVYQQLLDKVSLKGQLFMTKPAKSSDAVEGNPN
PNPNPSHKSELGRTTVFELIERLCEASYKSSEVTLKCGSYFRMEASVLLW
PPTAPYEQKSHIFGREPTIRHTDQKIEVCGFLSLSDIGSPATLSRHWVLP
KVEREKSGSSRRSGNLSAAAKPPKLNLDTSNPNYELEKLEADIKEFYAKD
SKDTEESGDDDVTIVLKPGPQTEQQKENLCVLLHGALKMENMAALVRVGD
KWYGFIYAFTDSKKKSNLMLNILPPGTNVIPWLGDLESLGFPEDLAPGET
ASFPVRADRRSYSQSSVVWIRQASLQSDVQKVLRHAKKMPDKTQHFYKEL
NRIRRAALALGFVELLEALAMLLEKECAHLSLNGASNDCTLQLQHAATEL
RKTSNRDMKSMIVPLQKVGASDAGSTAATAPAPAYMY*

LD26982.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15169-PA 586 GF15169-PA 1..586 1..587 2535 82.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24772-PA 587 GG24772-PA 1..587 1..587 2980 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10553-PA 584 GH10553-PA 1..563 1..567 2305 75.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
IntS14-PA 587 CG4785-PA 1..587 1..587 3032 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21423-PA 581 GI21423-PA 1..562 1..567 2293 76.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15605-PA 560 GL15605-PA 1..560 1..587 2336 78.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18430-PA 582 GA18430-PA 1..582 1..587 2453 81 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16800-PA 587 GM16800-PA 1..587 1..587 3105 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23076-PA 399 GD23076-PA 1..276 1..277 1290 92.1 Plus
Dsim\GD23076-PA 399 GD23076-PA 276..399 464..587 566 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11219-PA 582 GJ11219-PA 1..563 1..567 2361 78.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18422-PA 582 GK18422-PA 1..582 1..587 2292 76.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17385-PA 587 GE17385-PA 1..587 1..587 3061 96.6 Plus

LD26982.hyp Sequence

Translation from 70 to 1833

> LD26982.hyp
MPTLIALDASLSMLRPVPGRNEHTYQSLATKGIQHLLDNLTAAGKLEHVA
LLSYSTTAELKVDFTRDYDQVRQAVKKVEPVDKACLMSMLKAVVSIMSPW
GNQNILQVVVFTDCGLGFGNTSITGFLEAYAEKESEPEFGFLKTLANYNL
NFICLGLHGDYYFTRGLAVYQQLLDKVSLKGQLFMTKPAKSSDAVEGNPN
PNPNPSHKSELGRTTVFELIERLCEASYKSSEVTLKCGSYFRMEASVLLW
PPTAPYEQKSHIFGREPTIRHTDQKIEVCGFLSLSDIGSPATLSRHWVLP
KVEREKSGSSRRSGNLSAAAKPPKLNLDTSNPNYELEKLEADIKEFYAKD
SKDTEESGDDDVTIVLKPGPQTEQQKENLCVLLHGALKMENMAALVRVGD
KWYGFIYAFTDSKKKSNLMLNILPPGTNVIPWLGDLESLGFPEDLAPGET
ASFPVRADRRSYSQSSVVWIRQASLQSDVQKVLRHAKKMPDKTQHFYKEL
NRIRRAALALGFVELLEALAMLLEKECAHLSLNGASNDCTLQLQHAATEL
RKTSNRDMKSMIVPLQKVGASDAGSTAATAPAPAYMY*

LD26982.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
IntS14-PA 587 CG4785-PA 1..587 1..587 3032 100 Plus