Clone LD27030 Report

Search the DGRC for LD27030

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:270
Well:30
Vector:pOT2
Associated Gene/TranscriptNup50-RA
Protein status:LD27030.pep: gold
Preliminary Size:1903
Sequenced Size:1940

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2158 2001-01-01 Release 2 assignment
CG2158 2001-12-12 Blastp of sequenced clone
CG2158 2003-01-01 Sim4 clustering to Release 3
CG2158 2008-04-29 Release 5.5 accounting
CG2158 2008-08-15 Release 5.9 accounting
CG2158 2008-12-18 5.12 accounting

Clone Sequence Records

LD27030.complete Sequence

1940 bp (1940 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070546

> LD27030.complete
CTGAGGTAGCGATAACATTTATCGACCGCCAGCAACGCGGTGTGGATTTT
ATTCGGTTTTTTTTTTCTTTTTCACTGGCATTTGCTTTGAGTTTTAATAC
AGAGTAGAACAAGATGGCTGGCAAGCGACAAGCCACTTCGAACCTGAACC
ACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTCCGC
ACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCGCCG
CAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAGAAA
AGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGCAAG
CCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAATGT
GACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCATTCT
CGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGCACT
AGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTTGCC
GGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCTCGA
TATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAAACC
AGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTACCG
TGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGGACC
AAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAACTAT
GATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAACTC
CACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAAAGG
TGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTTGGC
AAGCCCAGCGCGCCAATAGGCGCCAGCGTATCGCCCTTAGCCAAGAAACC
CAACTGCACCATAACCAGTGGTGGAACAACCACCACGACCGCAACACCAC
TGGTCTCCTTCGGCAGTACGGCATCGTTCACTGCGCCAGTGCCGTCCTCC
TCCAGTATCTTCAGTTTGACAGCAAAACCCACTGGAGAAGCCAAATCCGA
TGATACCCCTAAGTCCAGCATTTTTAGCTTTGGAGCAAAGGATACGACCA
CTAAAAAGGATGAGCCTAACTTCTCGGCACCGAAGACCAATGGCTTTTCC
TTCGGACTGAAAAGTAACAACGACGACAAGCCAAGCACCTCGTTGTTTGC
GGGTTTCGGAAAAGCGCCTGGAGGAGCAGGAGACGGCGCAAAGGGCTTTT
CCTTCACCAACAGTGCCACGCCCTTCTCTCTCGGAAACATTCATCCGCCA
GCTGCAGCGGCAGCGCCTGCGGAGGAGGAAAAAGAAGAGGATACGCCCCC
AAAAGTCGAGTTTAAACAGGTTGTGGAGGATGACGCTATATACTCCAAGC
GGTGTAAGGTGTTCATTAAGAAAGACAAGGACTTTGGCGATCGTGGCGTG
GGCACGTTGTACTTGAAACCTGTCAAGGACTCCGAAAAGATCCAACTGTT
AGTCCGCGCCGACACCAATCTGGGCAACATCTTGGTCAACCTTATTCTTA
GCAAGGGTATACCTTGCCAGCGCATGGGCAAGAACAATGTGCTGATGGTC
TGCGTGCCCACGCCAGAGGACTCCAAGGCCACATCGCTGTTGCTACGCGT
AAAGACCGGTGACGAAGCCGACGACTTGCTGGAGAAGATCAAGGAGCACA
TCAAGTAGAGGATAGACAACTAACATGAATTCGTACATATAGATGTTGTT
TAATCGTTTGTATTTTAAAAGCTATAAATGTACGAAACCCTGGAAATAGA
ACTCAAGAATGTACACACAAAAAAAAAAAAAAAAAAAAAA

LD27030.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2158-RA 1986 CG2158-RA 52..1974 1..1923 9615 100 Plus
coilin-RC 2079 coilin-RC 1990..2079 1923..1834 450 100 Minus
coilin-RD 2123 coilin-RD 2034..2123 1923..1834 450 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4010908..4012040 339..1471 5665 100 Plus
chr2R 21145070 chr2R 4012093..4012547 1464..1918 2275 100 Plus
chr2R 21145070 chr2R 4010515..4010854 1..341 1655 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8123419..8124551 339..1471 5665 100 Plus
2R 25286936 2R 8124604..8125063 1464..1923 2300 100 Plus
2R 25286936 2R 8123025..8123365 1..341 1705 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8124618..8125750 339..1471 5665 100 Plus
2R 25260384 2R 8125803..8126262 1464..1923 2300 100 Plus
2R 25260384 2R 8124224..8124564 1..341 1705 100 Plus
Blast to na_te.dros performed 2019-03-15 13:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2628..2674 644..689 115 74.5 Plus

LD27030.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:38:22 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4010515..4010852 1..339 99 -> Plus
chr2R 4010909..4012038 340..1469 100 -> Plus
chr2R 4012099..4012547 1470..1918 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:07 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 1..1695 114..1808 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:55 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 1..1695 114..1808 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:07:12 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 1..1695 114..1808 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:01 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 1..1695 114..1808 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:35:59 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 1..1695 114..1808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:43 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 10..1927 1..1918 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:55 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 10..1927 1..1918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:07:12 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 1..1907 12..1918 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:01 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 10..1927 1..1918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:35:59 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 1..1907 12..1918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:22 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8123025..8123363 1..339 100 -> Plus
2R 8123420..8124549 340..1469 100 -> Plus
2R 8124610..8125058 1470..1918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:22 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8123025..8123363 1..339 100 -> Plus
2R 8123420..8124549 340..1469 100 -> Plus
2R 8124610..8125058 1470..1918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:22 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8123025..8123363 1..339 100 -> Plus
2R 8123420..8124549 340..1469 100 -> Plus
2R 8124610..8125058 1470..1918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:07:12 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4010530..4010868 1..339 100 -> Plus
arm_2R 4010925..4012054 340..1469 100 -> Plus
arm_2R 4012115..4012563 1470..1918 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:14 Download gff for LD27030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8124224..8124562 1..339 100 -> Plus
2R 8124619..8125748 340..1469 100 -> Plus
2R 8125809..8126257 1470..1918 100   Plus

LD27030.pep Sequence

Translation from 113 to 1807

> LD27030.pep
MAGKRQATSNLNHENWDLEEEPEERGTFRTATEEELKTRVIKKARRKIAG
GSSAAEEDGAEEKTAEPKSVFSGFSGFGKPAASPAAGSPFSFLANVTAPA
TTSSSEPKKSAFSFGFSSSSSSADRPVSTSICGTASTSSTAPSPLPAKES
TSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEYRESVA
DLNRSVIKFLQDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSK
TAQARSQEPVAKVSRASSPPKAATTFTFGKPSAPIGASVSPLAKKPNCTI
TSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTPK
SSIFSFGAKDTTTKKDEPNFSAPKTNGFSFGLKSNNDDKPSTSLFAGFGK
APGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEF
KQVVEDDAIYSKRCKVFIKKDKDFGDRGVGTLYLKPVKDSEKIQLLVRAD
TNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKATSLLLRVKTGD
EADDLLEKIKEHIK*

LD27030.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13664-PA 610 GF13664-PA 1..610 1..564 1391 54.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23336-PA 559 GG23336-PA 1..559 1..564 2157 82.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21906-PA 599 GH21906-PA 1..597 1..562 1121 48.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-PA 564 CG2158-PA 1..564 1..564 2856 100 Plus
CG46026-PA 666 CG46026-PA 207..523 64..373 161 24.2 Plus
Mur29B-PA 555 CG31901-PA 88..474 48..446 160 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19257-PA 593 GI19257-PA 1..591 1..562 1082 46.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17105-PA 702 GL17105-PA 263..702 148..564 1085 55.2 Plus
Dper\GL17105-PA 702 GL17105-PA 1..166 1..184 405 53.3 Plus
Dper\GL14673-PA 163 GL14673-PA 44..163 442..564 332 47.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15274-PA 703 GA15274-PA 145..703 48..564 1089 48.9 Plus
Dpse\GA15274-PA 703 GA15274-PA 1..166 1..184 405 53.3 Plus
Dpse\GA23660-PA 196 GA23660-PA 55..196 412..564 329 42.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21009-PA 581 GM21009-PA 1..581 1..564 2329 90.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10543-PA 581 GD10543-PA 1..581 1..564 2352 88.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22132-PA 590 GJ22132-PA 1..588 1..562 1210 50.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23278-PA 536 GK23278-PA 1..536 1..564 1299 51.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19178-PA 562 GE19178-PA 1..562 1..564 2192 82.4 Plus

LD27030.hyp Sequence

Translation from 113 to 1807

> LD27030.hyp
MAGKRQATSNLNHENWDLEEEPEERGTFRTATEEELKTRVIKKARRKIAG
GSSAAEEDGAEEKTAEPKSVFSGFSGFGKPAASPAAGSPFSFLANVTAPA
TTSSSEPKKSAFSFGFSSSSSSADRPVSTSICGTASTSSTAPSPLPAKES
TSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEYRESVA
DLNRSVIKFLQDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSK
TAQARSQEPVAKVSRASSPPKAATTFTFGKPSAPIGASVSPLAKKPNCTI
TSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTPK
SSIFSFGAKDTTTKKDEPNFSAPKTNGFSFGLKSNNDDKPSTSLFAGFGK
APGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEF
KQVVEDDAIYSKRCKVFIKKDKDFGDRGVGTLYLKPVKDSEKIQLLVRAD
TNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKATSLLLRVKTGD
EADDLLEKIKEHIK*

LD27030.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-PA 564 CG2158-PA 1..564 1..564 2856 100 Plus
CG46026-PA 666 CG46026-PA 207..523 64..373 161 24.2 Plus
Mur29B-PA 555 CG31901-PA 88..474 48..446 160 23.2 Plus