BDGP Sequence Production Resources |
Search the DGRC for LD27030
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 270 |
Well: | 30 |
Vector: | pOT2 |
Associated Gene/Transcript | Nup50-RA |
Protein status: | LD27030.pep: gold |
Preliminary Size: | 1903 |
Sequenced Size: | 1940 |
Gene | Date | Evidence |
---|---|---|
CG2158 | 2001-01-01 | Release 2 assignment |
CG2158 | 2001-12-12 | Blastp of sequenced clone |
CG2158 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2158 | 2008-04-29 | Release 5.5 accounting |
CG2158 | 2008-08-15 | Release 5.9 accounting |
CG2158 | 2008-12-18 | 5.12 accounting |
1940 bp (1940 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070546
> LD27030.complete CTGAGGTAGCGATAACATTTATCGACCGCCAGCAACGCGGTGTGGATTTT ATTCGGTTTTTTTTTTCTTTTTCACTGGCATTTGCTTTGAGTTTTAATAC AGAGTAGAACAAGATGGCTGGCAAGCGACAAGCCACTTCGAACCTGAACC ACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTCCGC ACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCGCCG CAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAGAAA AGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGCAAG CCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAATGT GACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCATTCT CGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGCACT AGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTTGCC GGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCTCGA TATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAAACC AGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTACCG TGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGGACC AAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAACTAT GATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAACTC CACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAAAGG TGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTTGGC AAGCCCAGCGCGCCAATAGGCGCCAGCGTATCGCCCTTAGCCAAGAAACC CAACTGCACCATAACCAGTGGTGGAACAACCACCACGACCGCAACACCAC TGGTCTCCTTCGGCAGTACGGCATCGTTCACTGCGCCAGTGCCGTCCTCC TCCAGTATCTTCAGTTTGACAGCAAAACCCACTGGAGAAGCCAAATCCGA TGATACCCCTAAGTCCAGCATTTTTAGCTTTGGAGCAAAGGATACGACCA CTAAAAAGGATGAGCCTAACTTCTCGGCACCGAAGACCAATGGCTTTTCC TTCGGACTGAAAAGTAACAACGACGACAAGCCAAGCACCTCGTTGTTTGC GGGTTTCGGAAAAGCGCCTGGAGGAGCAGGAGACGGCGCAAAGGGCTTTT CCTTCACCAACAGTGCCACGCCCTTCTCTCTCGGAAACATTCATCCGCCA GCTGCAGCGGCAGCGCCTGCGGAGGAGGAAAAAGAAGAGGATACGCCCCC AAAAGTCGAGTTTAAACAGGTTGTGGAGGATGACGCTATATACTCCAAGC GGTGTAAGGTGTTCATTAAGAAAGACAAGGACTTTGGCGATCGTGGCGTG GGCACGTTGTACTTGAAACCTGTCAAGGACTCCGAAAAGATCCAACTGTT AGTCCGCGCCGACACCAATCTGGGCAACATCTTGGTCAACCTTATTCTTA GCAAGGGTATACCTTGCCAGCGCATGGGCAAGAACAATGTGCTGATGGTC TGCGTGCCCACGCCAGAGGACTCCAAGGCCACATCGCTGTTGCTACGCGT AAAGACCGGTGACGAAGCCGACGACTTGCTGGAGAAGATCAAGGAGCACA TCAAGTAGAGGATAGACAACTAACATGAATTCGTACATATAGATGTTGTT TAATCGTTTGTATTTTAAAAGCTATAAATGTACGAAACCCTGGAAATAGA ACTCAAGAATGTACACACAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2158-RA | 1986 | CG2158-RA | 52..1974 | 1..1923 | 9615 | 100 | Plus |
coilin-RC | 2079 | coilin-RC | 1990..2079 | 1923..1834 | 450 | 100 | Minus |
coilin-RD | 2123 | coilin-RD | 2034..2123 | 1923..1834 | 450 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 4010908..4012040 | 339..1471 | 5665 | 100 | Plus |
chr2R | 21145070 | chr2R | 4012093..4012547 | 1464..1918 | 2275 | 100 | Plus |
chr2R | 21145070 | chr2R | 4010515..4010854 | 1..341 | 1655 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 8124618..8125750 | 339..1471 | 5665 | 100 | Plus |
2R | 25260384 | 2R | 8125803..8126262 | 1464..1923 | 2300 | 100 | Plus |
2R | 25260384 | 2R | 8124224..8124564 | 1..341 | 1705 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2628..2674 | 644..689 | 115 | 74.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 4010515..4010852 | 1..339 | 99 | -> | Plus |
chr2R | 4010909..4012038 | 340..1469 | 100 | -> | Plus |
chr2R | 4012099..4012547 | 1470..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2158-RA | 1..1695 | 114..1808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup50-RA | 1..1695 | 114..1808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup50-RA | 1..1695 | 114..1808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2158-RA | 1..1695 | 114..1808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup50-RA | 1..1695 | 114..1808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2158-RA | 10..1927 | 1..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup50-RA | 10..1927 | 1..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup50-RA | 1..1907 | 12..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2158-RA | 10..1927 | 1..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup50-RA | 1..1907 | 12..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8123025..8123363 | 1..339 | 100 | -> | Plus |
2R | 8123420..8124549 | 340..1469 | 100 | -> | Plus |
2R | 8124610..8125058 | 1470..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8123025..8123363 | 1..339 | 100 | -> | Plus |
2R | 8123420..8124549 | 340..1469 | 100 | -> | Plus |
2R | 8124610..8125058 | 1470..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8123025..8123363 | 1..339 | 100 | -> | Plus |
2R | 8123420..8124549 | 340..1469 | 100 | -> | Plus |
2R | 8124610..8125058 | 1470..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 4010530..4010868 | 1..339 | 100 | -> | Plus |
arm_2R | 4010925..4012054 | 340..1469 | 100 | -> | Plus |
arm_2R | 4012115..4012563 | 1470..1918 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8124224..8124562 | 1..339 | 100 | -> | Plus |
2R | 8124619..8125748 | 340..1469 | 100 | -> | Plus |
2R | 8125809..8126257 | 1470..1918 | 100 | Plus |
Translation from 113 to 1807
> LD27030.pep MAGKRQATSNLNHENWDLEEEPEERGTFRTATEEELKTRVIKKARRKIAG GSSAAEEDGAEEKTAEPKSVFSGFSGFGKPAASPAAGSPFSFLANVTAPA TTSSSEPKKSAFSFGFSSSSSSADRPVSTSICGTASTSSTAPSPLPAKES TSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEYRESVA DLNRSVIKFLQDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSK TAQARSQEPVAKVSRASSPPKAATTFTFGKPSAPIGASVSPLAKKPNCTI TSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTPK SSIFSFGAKDTTTKKDEPNFSAPKTNGFSFGLKSNNDDKPSTSLFAGFGK APGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEF KQVVEDDAIYSKRCKVFIKKDKDFGDRGVGTLYLKPVKDSEKIQLLVRAD TNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKATSLLLRVKTGD EADDLLEKIKEHIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13664-PA | 610 | GF13664-PA | 1..610 | 1..564 | 1391 | 54.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23336-PA | 559 | GG23336-PA | 1..559 | 1..564 | 2157 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21906-PA | 599 | GH21906-PA | 1..597 | 1..562 | 1121 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup50-PA | 564 | CG2158-PA | 1..564 | 1..564 | 2856 | 100 | Plus |
CG46026-PA | 666 | CG46026-PA | 207..523 | 64..373 | 161 | 24.2 | Plus |
Mur29B-PA | 555 | CG31901-PA | 88..474 | 48..446 | 160 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19257-PA | 593 | GI19257-PA | 1..591 | 1..562 | 1082 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17105-PA | 702 | GL17105-PA | 263..702 | 148..564 | 1085 | 55.2 | Plus |
Dper\GL17105-PA | 702 | GL17105-PA | 1..166 | 1..184 | 405 | 53.3 | Plus |
Dper\GL14673-PA | 163 | GL14673-PA | 44..163 | 442..564 | 332 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15274-PA | 703 | GA15274-PA | 145..703 | 48..564 | 1089 | 48.9 | Plus |
Dpse\GA15274-PA | 703 | GA15274-PA | 1..166 | 1..184 | 405 | 53.3 | Plus |
Dpse\GA23660-PA | 196 | GA23660-PA | 55..196 | 412..564 | 329 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21009-PA | 581 | GM21009-PA | 1..581 | 1..564 | 2329 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10543-PA | 581 | GD10543-PA | 1..581 | 1..564 | 2352 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22132-PA | 590 | GJ22132-PA | 1..588 | 1..562 | 1210 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23278-PA | 536 | GK23278-PA | 1..536 | 1..564 | 1299 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19178-PA | 562 | GE19178-PA | 1..562 | 1..564 | 2192 | 82.4 | Plus |
Translation from 113 to 1807
> LD27030.hyp MAGKRQATSNLNHENWDLEEEPEERGTFRTATEEELKTRVIKKARRKIAG GSSAAEEDGAEEKTAEPKSVFSGFSGFGKPAASPAAGSPFSFLANVTAPA TTSSSEPKKSAFSFGFSSSSSSADRPVSTSICGTASTSSTAPSPLPAKES TSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEYRESVA DLNRSVIKFLQDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSK TAQARSQEPVAKVSRASSPPKAATTFTFGKPSAPIGASVSPLAKKPNCTI TSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTPK SSIFSFGAKDTTTKKDEPNFSAPKTNGFSFGLKSNNDDKPSTSLFAGFGK APGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEF KQVVEDDAIYSKRCKVFIKKDKDFGDRGVGTLYLKPVKDSEKIQLLVRAD TNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKATSLLLRVKTGD EADDLLEKIKEHIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup50-PA | 564 | CG2158-PA | 1..564 | 1..564 | 2856 | 100 | Plus |
CG46026-PA | 666 | CG46026-PA | 207..523 | 64..373 | 161 | 24.2 | Plus |
Mur29B-PA | 555 | CG31901-PA | 88..474 | 48..446 | 160 | 23.2 | Plus |