Clone LD27042 Report

Search the DGRC for LD27042

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:270
Well:42
Vector:pOT2
Associated Gene/TranscriptmTerf3-RA
Protein status:LD27042.pep: gold
Preliminary Size:3075
Sequenced Size:1117

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5047 2001-01-01 Release 2 assignment
CG5047 2001-07-04 Blastp of sequenced clone
CG5047 2003-01-01 Sim4 clustering to Release 3
CG5047 2008-04-29 Release 5.5 accounting
CG5047 2008-08-15 Release 5.9 accounting
mTerf3 2008-12-18 5.12 accounting

Clone Sequence Records

LD27042.complete Sequence

1117 bp (1117 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051744

> LD27042.complete
CAGCATGTTTTGTTCAGCTCTACGTAACATTTTGAGGAATTCACAAAATG
CGGCTAAAAACGCAACAATTACCTCACAAATACGAAATCTGCGAGGACAA
CAAAGTGTCCACCATGAGGTAGAAGTGTTAACATCACCGGGTATAACCAC
CAAACAGAATGACAAGAAGACCGAGCCTGCGGAATGTGAAGGCTCCAAAG
AAGTGGCTCTGGACTTCCGAAATCGGGAGGCCCATGTGCCTTCCTTCAAT
TTGGCGGCCTATGTGAACAACTCGAGTACCCTGCAGCAATTTCTCAGCTT
GGGAGTGGATCTGCACAGTATTGAACGGCGAAAGGGATTGGGAGACTTTG
TACTGAAGCTGGATTTCGAGAAAAATGTGAAGCCCTACATAACGTTCCTG
GTGGATCAGGGCGTATCACCCGATGACTTCGGCAGGATGTTCACCAAGAA
CCCGCTGCTGTTCAAGGAGGACTTGGACGATCTGCAGACCAGAGTGAACT
ATCTAAAAAGCAAGAGATTCTCGGACGAAGCCAGGCAAAGAATTCTCACC
CAGAATCCTTATTGGCTGATGTTCTCCACCAGGCGAGTGGATCGTCGATT
GGGTTACTTCCAAAAGGAGTTCAAATTGAGTGGTCATGATCTGCGACTGT
TGGCCACCAGAGAACCCAATGCCATTACCTACAATATGGAACACCTCCGC
AAGTCTGTGTTCACCCTTAAGGAGGAAATGGGATTCAATGCCAAGGAGCT
AAGTGACCTGGTGGTACGAAAGCCGCGCCTCTTGATGATTCCTCCGGATG
ATCTTGTCGAGCGATTTAGTTACATTCACCAGGATATGGGCCTTCCACAT
GCCCAGATTGTCCAGTGCCCGGAGCTTTTGGCCTCACGCGAATTTAGACT
GCGGGAACGTCATGAGTTCCTGAAATTGCTTGGAAGAGCGCAATATGATC
CGCAAAAAGACCTGTATATATCGCCAAAAACTATAGTGGAAGGCAATAAC
TTTTATTTCGTCCGAAATGTGGCTAAAAGTGATTTGGAAACATTTGATTT
GTTTTTGAAAACGAGATAAGAATAAAATAAAAGTAAATGTATATATAAAA
AAAAAAAAAAAAAAAAA

LD27042.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf3-RA 1300 mTerf3-RA 163..1259 1..1097 5485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20508944..20509734 791..1 3925 99.7 Minus
chr3L 24539361 chr3L 20508580..20508884 1096..792 1525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20519954..20520744 791..1 3955 100 Minus
3L 28110227 3L 20519589..20519894 1097..792 1530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20513054..20513844 791..1 3955 100 Minus
3L 28103327 3L 20512689..20512994 1097..792 1530 100 Minus
Blast to na_te.dros performed 2019-03-15 15:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 1549..1599 1038..1091 128 74.1 Plus

LD27042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:01:16 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20508580..20508884 792..1096 100 <- Minus
chr3L 20508944..20509734 1..791 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:09 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 1..1065 5..1069 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:50 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 1..1065 5..1069 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:47:33 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 1..1065 5..1069 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:30 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
CG5047-RA 1..1065 5..1069 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:22:21 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 1..1065 5..1069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:22 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:50 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:33 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 29..1124 1..1096 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:30 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
CG5047-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:22:21 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf3-RA 29..1124 1..1096 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:16 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20519590..20519894 792..1096 100 <- Minus
3L 20519954..20520744 1..791 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:16 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20519590..20519894 792..1096 100 <- Minus
3L 20519954..20520744 1..791 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:16 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20519590..20519894 792..1096 100 <- Minus
3L 20519954..20520744 1..791 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:33 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20512690..20512994 792..1096 100 <- Minus
arm_3L 20513054..20513844 1..791 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:00 Download gff for LD27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20512690..20512994 792..1096 100 <- Minus
3L 20513054..20513844 1..791 100   Minus

LD27042.hyp Sequence

Translation from 0 to 1068

> LD27042.hyp
SMFCSALRNILRNSQNAAKNATITSQIRNLRGQQSVHHEVEVLTSPGITT
KQNDKKTEPAECEGSKEVALDFRNREAHVPSFNLAAYVNNSSTLQQFLSL
GVDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKN
PLLFKEDLDDLQTRVNYLKSKRFSDEARQRILTQNPYWLMFSTRRVDRRL
GYFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKEL
SDLVVRKPRLLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRL
RERHEFLKLLGRAQYDPQKDLYISPKTIVEGNNFYFVRNVAKSDLETFDL
FLKTR*

LD27042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf3-PA 354 CG5047-PA 1..354 2..355 1827 100 Plus

LD27042.pep Sequence

Translation from 4 to 1068

> LD27042.pep
MFCSALRNILRNSQNAAKNATITSQIRNLRGQQSVHHEVEVLTSPGITTK
QNDKKTEPAECEGSKEVALDFRNREAHVPSFNLAAYVNNSSTLQQFLSLG
VDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKNP
LLFKEDLDDLQTRVNYLKSKRFSDEARQRILTQNPYWLMFSTRRVDRRLG
YFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKELS
DLVVRKPRLLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLR
ERHEFLKLLGRAQYDPQKDLYISPKTIVEGNNFYFVRNVAKSDLETFDLF
LKTR*

LD27042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24125-PA 353 GF24125-PA 1..353 1..354 1566 82.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13303-PA 353 GG13303-PA 1..353 1..354 1726 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17011-PA 353 GH17011-PA 1..353 1..354 1363 72.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf3-PA 354 CG5047-PA 1..354 1..354 1827 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11905-PA 312 GI11905-PA 6..312 52..354 1322 80.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12770-PA 353 GL12770-PA 1..353 1..354 1522 79.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18619-PA 351 GA18619-PA 1..351 1..354 1515 79.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22204-PA 354 GM22204-PA 1..354 1..354 1828 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12179-PA 296 GD12179-PA 1..263 1..268 1297 92.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13779-PA 354 GJ13779-PA 1..354 1..354 1404 75.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12335-PA 353 GK12335-PA 1..353 1..354 1293 70.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22739-PA 350 GE22739-PA 1..350 1..354 1696 89.8 Plus