BDGP Sequence Production Resources |
Search the DGRC for LD27042
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 270 |
Well: | 42 |
Vector: | pOT2 |
Associated Gene/Transcript | mTerf3-RA |
Protein status: | LD27042.pep: gold |
Preliminary Size: | 3075 |
Sequenced Size: | 1117 |
Gene | Date | Evidence |
---|---|---|
CG5047 | 2001-01-01 | Release 2 assignment |
CG5047 | 2001-07-04 | Blastp of sequenced clone |
CG5047 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5047 | 2008-04-29 | Release 5.5 accounting |
CG5047 | 2008-08-15 | Release 5.9 accounting |
mTerf3 | 2008-12-18 | 5.12 accounting |
1117 bp (1117 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051744
> LD27042.complete CAGCATGTTTTGTTCAGCTCTACGTAACATTTTGAGGAATTCACAAAATG CGGCTAAAAACGCAACAATTACCTCACAAATACGAAATCTGCGAGGACAA CAAAGTGTCCACCATGAGGTAGAAGTGTTAACATCACCGGGTATAACCAC CAAACAGAATGACAAGAAGACCGAGCCTGCGGAATGTGAAGGCTCCAAAG AAGTGGCTCTGGACTTCCGAAATCGGGAGGCCCATGTGCCTTCCTTCAAT TTGGCGGCCTATGTGAACAACTCGAGTACCCTGCAGCAATTTCTCAGCTT GGGAGTGGATCTGCACAGTATTGAACGGCGAAAGGGATTGGGAGACTTTG TACTGAAGCTGGATTTCGAGAAAAATGTGAAGCCCTACATAACGTTCCTG GTGGATCAGGGCGTATCACCCGATGACTTCGGCAGGATGTTCACCAAGAA CCCGCTGCTGTTCAAGGAGGACTTGGACGATCTGCAGACCAGAGTGAACT ATCTAAAAAGCAAGAGATTCTCGGACGAAGCCAGGCAAAGAATTCTCACC CAGAATCCTTATTGGCTGATGTTCTCCACCAGGCGAGTGGATCGTCGATT GGGTTACTTCCAAAAGGAGTTCAAATTGAGTGGTCATGATCTGCGACTGT TGGCCACCAGAGAACCCAATGCCATTACCTACAATATGGAACACCTCCGC AAGTCTGTGTTCACCCTTAAGGAGGAAATGGGATTCAATGCCAAGGAGCT AAGTGACCTGGTGGTACGAAAGCCGCGCCTCTTGATGATTCCTCCGGATG ATCTTGTCGAGCGATTTAGTTACATTCACCAGGATATGGGCCTTCCACAT GCCCAGATTGTCCAGTGCCCGGAGCTTTTGGCCTCACGCGAATTTAGACT GCGGGAACGTCATGAGTTCCTGAAATTGCTTGGAAGAGCGCAATATGATC CGCAAAAAGACCTGTATATATCGCCAAAAACTATAGTGGAAGGCAATAAC TTTTATTTCGTCCGAAATGTGGCTAAAAGTGATTTGGAAACATTTGATTT GTTTTTGAAAACGAGATAAGAATAAAATAAAAGTAAATGTATATATAAAA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mTerf3-RA | 1300 | mTerf3-RA | 163..1259 | 1..1097 | 5485 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tc3 | 1743 | Tc3 TC3 1743bp | 1549..1599 | 1038..1091 | 128 | 74.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20508580..20508884 | 792..1096 | 100 | <- | Minus |
chr3L | 20508944..20509734 | 1..791 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 1..1065 | 5..1069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 1..1065 | 5..1069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 1..1065 | 5..1069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5047-RA | 1..1065 | 5..1069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 1..1065 | 5..1069 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 1..1096 | 1..1096 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 1..1096 | 1..1096 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 29..1124 | 1..1096 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5047-RA | 1..1096 | 1..1096 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mTerf3-RA | 29..1124 | 1..1096 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20519590..20519894 | 792..1096 | 100 | <- | Minus |
3L | 20519954..20520744 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20519590..20519894 | 792..1096 | 100 | <- | Minus |
3L | 20519954..20520744 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20519590..20519894 | 792..1096 | 100 | <- | Minus |
3L | 20519954..20520744 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20512690..20512994 | 792..1096 | 100 | <- | Minus |
arm_3L | 20513054..20513844 | 1..791 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20512690..20512994 | 792..1096 | 100 | <- | Minus |
3L | 20513054..20513844 | 1..791 | 100 | Minus |
Translation from 0 to 1068
> LD27042.hyp SMFCSALRNILRNSQNAAKNATITSQIRNLRGQQSVHHEVEVLTSPGITT KQNDKKTEPAECEGSKEVALDFRNREAHVPSFNLAAYVNNSSTLQQFLSL GVDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKN PLLFKEDLDDLQTRVNYLKSKRFSDEARQRILTQNPYWLMFSTRRVDRRL GYFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKEL SDLVVRKPRLLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRL RERHEFLKLLGRAQYDPQKDLYISPKTIVEGNNFYFVRNVAKSDLETFDL FLKTR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mTerf3-PA | 354 | CG5047-PA | 1..354 | 2..355 | 1827 | 100 | Plus |
Translation from 4 to 1068
> LD27042.pep MFCSALRNILRNSQNAAKNATITSQIRNLRGQQSVHHEVEVLTSPGITTK QNDKKTEPAECEGSKEVALDFRNREAHVPSFNLAAYVNNSSTLQQFLSLG VDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVDQGVSPDDFGRMFTKNP LLFKEDLDDLQTRVNYLKSKRFSDEARQRILTQNPYWLMFSTRRVDRRLG YFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKELS DLVVRKPRLLMIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLR ERHEFLKLLGRAQYDPQKDLYISPKTIVEGNNFYFVRNVAKSDLETFDLF LKTR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24125-PA | 353 | GF24125-PA | 1..353 | 1..354 | 1566 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13303-PA | 353 | GG13303-PA | 1..353 | 1..354 | 1726 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17011-PA | 353 | GH17011-PA | 1..353 | 1..354 | 1363 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mTerf3-PA | 354 | CG5047-PA | 1..354 | 1..354 | 1827 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11905-PA | 312 | GI11905-PA | 6..312 | 52..354 | 1322 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12770-PA | 353 | GL12770-PA | 1..353 | 1..354 | 1522 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18619-PA | 351 | GA18619-PA | 1..351 | 1..354 | 1515 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22204-PA | 354 | GM22204-PA | 1..354 | 1..354 | 1828 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12179-PA | 296 | GD12179-PA | 1..263 | 1..268 | 1297 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13779-PA | 354 | GJ13779-PA | 1..354 | 1..354 | 1404 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12335-PA | 353 | GK12335-PA | 1..353 | 1..354 | 1293 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22739-PA | 350 | GE22739-PA | 1..350 | 1..354 | 1696 | 89.8 | Plus |