Clone LD27069 Report

Search the DGRC for LD27069

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:270
Well:69
Vector:pOT2
Associated Gene/TranscriptCG10171-RA
Protein status:LD27069.pep: gold
Preliminary Size:1624
Sequenced Size:1607

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10171 2001-01-01 Release 2 assignment
CG10171 2001-10-10 Blastp of sequenced clone
CG10171 2003-01-01 Sim4 clustering to Release 3
CG10171 2008-04-29 Release 5.5 accounting
CG10171 2008-08-15 Release 5.9 accounting
CG10171 2008-12-18 5.12 accounting

Clone Sequence Records

LD27069.complete Sequence

1607 bp (1607 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061341

> LD27069.complete
AGAAAGTGGCGATAAACAGCGCCCATAAAACGTCAAGATGCGTGACTGGA
TGCCAGTGCTCTTCTGCGGACTGTCCGTGCCGATCTCGCTGTTCATGTGG
CTGGGCAATGTGGCGCTGTCCAAGTTCTGGAGCAGTGACTTTGAGGAGTC
CCGGGTGATTCCGCCGGTGCGCTGGCTCTTCTCCACACTGGCGCCCTTGG
CCCTGATGACTGTGGCTCTGCGCCGGAGGAGCGTCAACCGATCTGGAGCT
GCGCTGGGCATTCTGGTGGCCTTCATTCTCTCCATCGCCAGCCATCCGTT
CTTCGCCAGCTTGGTGGTGTTCTTCTTCAGCTCATCGCGGGCCACCAAGT
TCCGCGCGCACATGAAACGCCGTTTCGAGAGCGATTTTCGCGAGGGCGAA
GGCCAACGAAACTGGATACAGGTACTCTGCAACGGAGGCATGGCCGCCCA
GCTTGCATTGCTTTATCTGCTGGACTGCGGTAGTGGCGAGCGGGCGGTGG
ACTTCGCACGAGAATACCGATCCAGCTGGCTGGGTGTGGCCGTTATGAGT
GCGTTTGCCTGTTGCAATGGCGACACCTGGTCCAGTGAACTAGGATCCGT
GCTGTCGCAACGCGATCCAGTTTCTATCATCACCTGGCGCAGAGTGCCGC
GCGGTACCAATGGTGGGGTTTCGTTGCTCGGCGTCGCGGTGAGTCTGCTC
GGCGGTCTGCTCGTCGGCTTTGGCTATTTCGTCACCGTTCGTTACACGGT
TGAGGCCAAAATGCTTCTGATTAGCCCACCACAATGGCCAATCATCGCCT
TCGGTGGCATCGCTGGACTTTTTGGGTCCCTTTTGGACTCTGTCCTAGGT
GGTCTGCTGCAGTTCTCGGGCATCAATGAGGAAGGCAAGATTGTGGATAC
ACCTGGAAAGGGAGTGCGCCACGTAAGCGGACTGCGCATCCTGGACAACC
ATAGTGTCAACCTGATTTCCAGCATCGTCACCGGCGTCACCATTCCTCTC
CTGGCCCAGAGATTCTGGCCCGTGCGCTAATGCTGTTTTGGATTAGGATT
AGCTGCATTCAATAGCTAAAAATGTCAAAGGCTGCCTCACAAGATTGAAT
TCCGTGTTAAACATAAACCCATCCTCATAAAGCCTTTTAGACAGATATAT
TTTTATGAAGCTTACATATCGCCTAGCGAACTAACCAACCTATGAGACTC
GATGAAAACAACGATTGGGCACCGAATAGCCAAGGCAGTTAGATTATATT
TACTCTAAGGTAGCTAACCATGTTCCTTTACGGATTATGACGTTGTTGTT
ACTGTGACTGTTCACCTCCATTTTGTGTATTAACTCTACTAAACACGAAC
CGTACATGTGGATCTATTGTCATTGTCTCGAAATTCTCGTACGTGACGGA
ATACATTTTCTGATTTGGTTATGTATATTCTTATGGCGTCATCTCAAGTT
GTTTTCAACAATTTGGAGATCAATGATTGGTTCCCGCTGGAATAATTTTA
GCAGACCTCGCTCCAAATCGAATGTTTTGCTTATTGCACAAGCAATTGCT
GTTGTGGTGATTAAAATATTCATGAAATTTCTATAACACAAAAAAAAAAA
AAAAAAA

LD27069.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-RA 1915 CG10171-RA 152..1742 1..1591 7955 100 Plus
CG10171-RB 1807 CG10171-RB 216..1661 146..1591 7230 100 Plus
CG10171-RB 1807 CG10171-RB 59..204 1..146 730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13376822..13377826 1150..146 4905 99.2 Minus
chr3L 24539361 chr3L 13376321..13376767 1589..1143 2235 100 Minus
chr3L 24539361 chr3L 13377893..13378038 146..1 730 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13386595..13387599 1150..146 5010 99.9 Minus
3L 28110227 3L 13386092..13386540 1591..1143 2245 100 Minus
3L 28110227 3L 13387666..13387811 146..1 730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13379695..13380699 1150..146 5010 99.9 Minus
3L 28103327 3L 13379192..13379640 1591..1143 2245 100 Minus
3L 28103327 3L 13380766..13380911 146..1 730 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:39:37 has no hits.

LD27069.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:40:31 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13376321..13376765 1145..1589 100 <- Minus
chr3L 13376828..13377825 147..1144 99 <- Minus
chr3L 13377893..13378038 1..146 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:12 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 1..993 38..1030 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:30 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 1..993 38..1030 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 1..993 38..1030 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:24 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 1..993 38..1030 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:16 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 1..993 38..1030 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:49 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 59..1647 1..1589 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:30 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 59..1647 1..1589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 23..1611 1..1589 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:25 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 59..1647 1..1589 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:16 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
CG10171-RA 23..1611 1..1589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:31 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13386094..13386538 1145..1589 100 <- Minus
3L 13386601..13387598 147..1144 100 <- Minus
3L 13387666..13387811 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:31 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13386094..13386538 1145..1589 100 <- Minus
3L 13386601..13387598 147..1144 100 <- Minus
3L 13387666..13387811 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:31 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13386094..13386538 1145..1589 100 <- Minus
3L 13386601..13387598 147..1144 100 <- Minus
3L 13387666..13387811 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:06 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13379194..13379638 1145..1589 100 <- Minus
arm_3L 13379701..13380698 147..1144 100 <- Minus
arm_3L 13380766..13380911 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:16 Download gff for LD27069.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13379194..13379638 1145..1589 100 <- Minus
3L 13379701..13380698 147..1144 100 <- Minus
3L 13380766..13380911 1..146 100   Minus

LD27069.pep Sequence

Translation from 37 to 1029

> LD27069.pep
MRDWMPVLFCGLSVPISLFMWLGNVALSKFWSSDFEESRVIPPVRWLFST
LAPLALMTVALRRRSVNRSGAALGILVAFILSIASHPFFASLVVFFFSSS
RATKFRAHMKRRFESDFREGEGQRNWIQVLCNGGMAAQLALLYLLDCGSG
ERAVDFAREYRSSWLGVAVMSAFACCNGDTWSSELGSVLSQRDPVSIITW
RRVPRGTNGGVSLLGVAVSLLGGLLVGFGYFVTVRYTVEAKMLLISPPQW
PIIAFGGIAGLFGSLLDSVLGGLLQFSGINEEGKIVDTPGKGVRHVSGLR
ILDNHSVNLISSIVTGVTIPLLAQRFWPVR*

LD27069.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10413-PA 330 GF10413-PA 1..330 1..330 1452 91.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13778-PA 330 GG13778-PA 1..330 1..330 1658 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14423-PA 332 GH14423-PA 5..332 3..330 1417 84.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-PA 330 CG10171-PA 1..330 1..330 1701 100 Plus
CG10171-PB 334 CG10171-PB 1..334 1..330 1686 98.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13550-PA 332 GI13550-PA 5..332 3..330 1521 86.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15697-PA 330 GL15697-PA 1..330 1..330 1559 87.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10130-PA 330 GA10130-PA 1..330 1..330 1559 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24600-PA 330 GM24600-PA 1..330 1..330 1676 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12670-PA 271 GD12670-PA 1..36 1..36 211 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11909-PA 332 GJ11909-PA 5..332 3..330 1470 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16775-PA 332 GK16775-PA 2..332 1..330 1369 83.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20072-PA 330 GE20072-PA 1..330 1..330 1669 97.6 Plus

LD27069.hyp Sequence

Translation from 37 to 1029

> LD27069.hyp
MRDWMPVLFCGLSVPISLFMWLGNVALSKFWSSDFEESRVIPPVRWLFST
LAPLALMTVALRRRSVNRSGAALGILVAFILSIASHPFFASLVVFFFSSS
RATKFRAHMKRRFESDFREGEGQRNWIQVLCNGGMAAQLALLYLLDCGSG
ERAVDFAREYRSSWLGVAVMSAFACCNGDTWSSELGSVLSQRDPVSIITW
RRVPRGTNGGVSLLGVAVSLLGGLLVGFGYFVTVRYTVEAKMLLISPPQW
PIIAFGGIAGLFGSLLDSVLGGLLQFSGINEEGKIVDTPGKGVRHVSGLR
ILDNHSVNLISSIVTGVTIPLLAQRFWPVR*

LD27069.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10171-PA 330 CG10171-PA 1..330 1..330 1701 100 Plus
CG10171-PB 334 CG10171-PB 1..334 1..330 1686 98.8 Plus