BDGP Sequence Production Resources |
Search the DGRC for LD27182
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 271 |
Well: | 82 |
Vector: | pOT2 |
Associated Gene/Transcript | 140up-RA |
Protein status: | LD27182.pep: gold |
Preliminary Size: | 977 |
Sequenced Size: | 895 |
Gene | Date | Evidence |
---|---|---|
CG9852 | 2001-01-01 | Release 2 assignment |
CG9852 | 2001-09-19 | Blastp of sequenced clone |
CG9852 | 2003-01-01 | Sim4 clustering to Release 3 |
140up | 2008-04-29 | Release 5.5 accounting |
140up | 2008-08-15 | Release 5.9 accounting |
140up | 2008-12-18 | 5.12 accounting |
895 bp (895 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058577
> LD27182.complete CACGCTTAAAAAATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCGC AGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAGG AAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAACA GGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCAT ATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTTA TTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAAT TTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATGCCAA GAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTCA AATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCATCATC ACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACTTGGC CGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGGG GCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGT GTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGGT TCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATTCAAC AGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGGCC CACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGTGAGT CCTGAGGACTTAAAGAAGACGCCAGTGTGAACTTAGTTACTTTTTTTAAT TTAAATAAATTGCATATATGTCCATCTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9949280..9949716 | 877..441 | 2050 | 97.9 | Minus |
chr3R | 27901430 | chr3R | 9950158..9950342 | 185..1 | 925 | 100 | Minus |
chr3R | 27901430 | chr3R | 9949929..9950094 | 351..186 | 830 | 100 | Minus |
chr3R | 27901430 | chr3R | 9949779..9949869 | 440..350 | 455 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14124423..14124862 | 880..441 | 2200 | 100 | Minus |
3R | 32079331 | 3R | 14125304..14125488 | 185..1 | 925 | 100 | Minus |
3R | 32079331 | 3R | 14125075..14125240 | 351..186 | 830 | 100 | Minus |
3R | 32079331 | 3R | 14124925..14125015 | 440..350 | 455 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13865254..13865693 | 880..441 | 2200 | 100 | Minus |
3R | 31820162 | 3R | 13866135..13866319 | 185..1 | 925 | 100 | Minus |
3R | 31820162 | 3R | 13865906..13866071 | 351..186 | 830 | 100 | Minus |
3R | 31820162 | 3R | 13865756..13865846 | 440..350 | 455 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9949280..9949716 | 441..877 | 93 | <- | Minus |
chr3R | 9949779..9949867 | 352..440 | 100 | <- | Minus |
chr3R | 9949929..9950094 | 186..351 | 100 | <- | Minus |
chr3R | 9950158..9950342 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 1..786 | 13..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 1..786 | 13..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 1..786 | 13..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 1..786 | 13..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 1..786 | 13..798 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 43..919 | 1..877 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 43..919 | 1..877 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 61..937 | 1..877 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 43..919 | 1..877 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
140up-RA | 61..937 | 1..877 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14124426..14124862 | 441..877 | 100 | <- | Minus |
3R | 14124925..14125013 | 352..440 | 100 | <- | Minus |
3R | 14125075..14125240 | 186..351 | 100 | <- | Minus |
3R | 14125304..14125488 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14124426..14124862 | 441..877 | 100 | <- | Minus |
3R | 14124925..14125013 | 352..440 | 100 | <- | Minus |
3R | 14125075..14125240 | 186..351 | 100 | <- | Minus |
3R | 14125304..14125488 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14124426..14124862 | 441..877 | 100 | <- | Minus |
3R | 14124925..14125013 | 352..440 | 100 | <- | Minus |
3R | 14125075..14125240 | 186..351 | 100 | <- | Minus |
3R | 14125304..14125488 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9950148..9950584 | 441..877 | 100 | <- | Minus |
arm_3R | 9950647..9950735 | 352..440 | 100 | <- | Minus |
arm_3R | 9950797..9950962 | 186..351 | 100 | <- | Minus |
arm_3R | 9951026..9951210 | 1..185 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13866135..13866319 | 1..185 | 100 | Minus | |
3R | 13865257..13865693 | 441..877 | 100 | <- | Minus |
3R | 13865756..13865844 | 352..440 | 100 | <- | Minus |
3R | 13865906..13866071 | 186..351 | 100 | <- | Minus |
Translation from 12 to 797
> LD27182.hyp MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK TSEHVSLDTIK*
Translation from 12 to 797
> LD27182.pep MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK TSEHVSLDTIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18787-PA | 261 | GF18787-PA | 1..261 | 1..261 | 1099 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21481-PA | 261 | GG21481-PA | 1..261 | 1..261 | 1192 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19697-PA | 264 | GH19697-PA | 1..264 | 1..261 | 1039 | 80.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
140up-PB | 261 | CG9852-PB | 1..261 | 1..261 | 1355 | 100 | Plus |
140up-PA | 261 | CG9852-PA | 1..261 | 1..261 | 1355 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24553-PA | 261 | GI24553-PA | 1..261 | 1..261 | 1032 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23308-PA | 261 | GL23308-PA | 1..261 | 1..261 | 1118 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22073-PA | 261 | GA22073-PA | 1..261 | 1..261 | 1105 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25883-PA | 261 | GM25883-PA | 1..261 | 1..261 | 1339 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20454-PA | 261 | GD20454-PA | 1..261 | 1..261 | 1250 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\140up-PA | 261 | GJ22619-PA | 1..261 | 1..261 | 1068 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10906-PA | 261 | GK10906-PA | 1..261 | 1..261 | 1037 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10058-PA | 261 | GE10058-PA | 1..261 | 1..261 | 1238 | 95.4 | Plus |