Clone LD27268 Report

Search the DGRC for LD27268

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:272
Well:68
Vector:pOT2
Associated Gene/TranscriptCG3662-RA
Protein status:LD27268.pep: gold
Sequenced Size:1669

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3662 2003-01-01 Sim4 clustering to Release 3
CG3662 2004-10-04 Blastp of sequenced clone
CG3662 2008-04-29 Release 5.5 accounting
CG3662 2008-08-15 Release 5.9 accounting
CG3662 2008-12-18 5.12 accounting

Clone Sequence Records

LD27268.complete Sequence

1669 bp (1669 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016099

> LD27268.complete
TCACACTGGCTTGTCTGGATCGAGATTTCAGCTCGTCAACAATTGCGCAC
TAAATTTTCAGTAAAAACAAACAAGTTGGTCGTGCGGAGGCATCAAGAAC
ACAGCATACGAGCAGCCATGACAATTCTGGGAAAACTGCGGGGACAGCCC
ACGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCT
CATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATG
AAGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATC
AAATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGT
CCTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCA
TGCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAG
ATGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCG
CTCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGG
ACGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGAC
GAGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGG
TCGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTA
CCACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCC
CCGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAA
CATAGATACGGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCA
TCACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGAT
ATGAAGGTCTACATGATGGAGAAGTTCGTCTCAGGCGTCTCGAAGAGATC
GGCTGATCCGCTGCCGGAGTCAGCCAAGTACGCCGAGTTCATGGGCAAGG
GCGTCATCGAGTACGACCTGGCCAACATCGCCGAGGTGGAGGCCTACGAG
GCCAACGAGGCTAGGCAACAGGCCTGAGCTTTGGAGGAGGAGGAGGATCT
TTTAAGCTACAACACCCATATGATAACACAACCTAAACAAATTATTACTT
AGAATCGATTTATACATACACAGAGCCATGCCTACAAGTCTAGATCTGGT
TACCACTGGTTAGCAGGACACACACCCACTCCGGGTGGATATATCATCAT
TGGCCAAGCGAGTTTAGCAAATTATAGACCCTAGTAAGGAAGCGTAACGA
AAATGTACCTAGAACGCAATCAAAAGCGATCGACGAAATTGTGACAAATA
CGTGAAATGTATTAGCCTCGAGGGCGGATTGAAAGGATACGGAGAGATTG
GATCGGTACACGCGCACAGACACACTGCGGCATTCCAAGTACATATTTTA
TATATATGCTCTTAAACTCTATTCTAACAATTAATGTATAGAACGGATTC
AGAACGAAGCTATTTACAGCAAAAACAACCTGAGGGCGGAAAACATGGCA
ACTATCAGCATGCGTAAGAGAAACAAGTAAATTAATCTAAATGTTCTTTA
AACTACTTACATGTATTAAACGCGAATTTGTGATCTTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

LD27268.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RA 1831 CG3662-RA 177..1815 1..1639 8195 100 Plus
CG3662-RC 1750 CG3662-RC 177..1614 1..1438 7190 100 Plus
CG3662-RB 2873 CG3662-RB 1444..2857 226..1639 7070 100 Plus
CG3662-RB 2873 CG3662-RB 21..245 1..225 1125 100 Plus
CG3662-RC 1750 CG3662-RC 1615..1734 1520..1639 600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 822714..823425 226..937 3515 99.6 Plus
chr2L 23010047 chr2L 823492..824193 937..1638 3495 99.9 Plus
chr2L 23010047 chr2L 821306..821530 1..225 1125 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823569 226..937 3560 100 Plus
2L 23513712 2L 823636..824338 937..1639 3515 100 Plus
2L 23513712 2L 821435..821659 1..225 1125 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823569 226..937 3560 100 Plus
2L 23513712 2L 823636..824338 937..1639 3515 100 Plus
2L 23513712 2L 821435..821659 1..225 1125 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:26:28 has no hits.

LD27268.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:32 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 821306..821530 1..225 100 -> Plus
chr2L 822714..823425 226..937 99 -> Plus
chr2L 823493..824193 938..1638 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:29 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 1..960 118..1077 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:16 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RC 1..960 118..1077 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:41 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 1..960 118..1077 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:05 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 1..960 118..1077 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:54 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 1..960 118..1077 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:56 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 18..1655 1..1638 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:16 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 18..1655 1..1638 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:41 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 14..1651 1..1638 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:05 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 18..1655 1..1638 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:54 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 14..1651 1..1638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:32 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
2L 821435..821659 1..225 100 -> Plus
2L 822858..823569 226..937 100 -> Plus
2L 823637..824337 938..1638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:32 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
2L 821435..821659 1..225 100 -> Plus
2L 822858..823569 226..937 100 -> Plus
2L 823637..824337 938..1638 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:32 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
2L 821435..821659 1..225 100 -> Plus
2L 822858..823569 226..937 100 -> Plus
2L 823637..824337 938..1638 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:41 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 821435..821659 1..225 100 -> Plus
arm_2L 822858..823569 226..937 100 -> Plus
arm_2L 823637..824337 938..1638 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:01 Download gff for LD27268.complete
Subject Subject Range Query Range Percent Splice Strand
2L 821435..821659 1..225 100 -> Plus
2L 822858..823569 226..937 100 -> Plus
2L 823637..824337 938..1638 100   Plus

LD27268.hyp Sequence

Translation from 0 to 1076

> LD27268.hyp
SHWLVWIEISARQQLRTKFSVKTNKLVVRRHQEHSIRAAMTILGKLRGQP
TDQEKVPLPMNLNDEALMHHGSLIAPKVAYSDNEADAESMVFNRPQHHCI
KSFLLFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHALCEIPYPEDSME
MARVYPRTVEPFALNWRSLLPELAQPMPNSGSLDESHFREDIELDGDSDD
EGYARVDVPDFKDGRRGRFMHDFKENQSAIIDTTTGRCFIMPLDRDTTLP
PTSFVDLIKKMSTGYYNIDTERVRRQMRVVMPRITDVSLISERIANECFD
MKVYMMEKFVSGVSKRSADPLPESAKYAEFMGKGVIEYDLANIAEVEAYE
ANEARQQA*

LD27268.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PD 319 CG3662-PD 1..319 40..358 1668 100 Plus
CG3662-PC 319 CG3662-PC 1..319 40..358 1668 100 Plus
CG3662-PA 319 CG3662-PA 1..319 40..358 1668 100 Plus
CG3662-PB 269 CG3662-PB 1..269 90..358 1410 100 Plus

LD27268.pep Sequence

Translation from 117 to 1076

> LD27268.pep
MTILGKLRGQPTDQEKVPLPMNLNDEALMHHGSLIAPKVAYSDNEADAES
MVFNRPQHHCIKSFLLFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHAL
CEIPYPEDSMEMARVYPRTVEPFALNWRSLLPELAQPMPNSGSLDESHFR
EDIELDGDSDDEGYARVDVPDFKDGRRGRFMHDFKENQSAIIDTTTGRCF
IMPLDRDTTLPPTSFVDLIKKMSTGYYNIDTERVRRQMRVVMPRITDVSL
ISERIANECFDMKVYMMEKFVSGVSKRSADPLPESAKYAEFMGKGVIEYD
LANIAEVEAYEANEARQQA*

LD27268.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15077-PA 325 GF15077-PA 1..322 1..318 1489 85.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24748-PA 319 GG24748-PA 1..319 1..319 1642 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11245-PA 331 GH11245-PA 1..325 1..318 1297 72.6 Plus
Dgri\GH23910-PA 260 GH23910-PA 1..244 37..273 959 72.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PD 319 CG3662-PD 1..319 1..319 1668 100 Plus
CG3662-PC 319 CG3662-PC 1..319 1..319 1668 100 Plus
CG3662-PA 319 CG3662-PA 1..319 1..319 1668 100 Plus
CG3662-PB 269 CG3662-PB 1..269 51..319 1410 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21849-PA 326 GI21849-PA 1..323 1..318 1320 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19499-PA 328 GL19499-PA 1..326 1..318 1396 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17596-PA 328 GA17596-PA 1..326 1..318 1396 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16770-PA 319 GM16770-PA 1..319 1..319 1704 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17797-PA 320 GJ17797-PA 1..317 1..318 1333 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24634-PA 335 GK24634-PA 1..332 1..318 1303 73.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17121-PA 319 GE17121-PA 1..319 1..319 1665 96.2 Plus