Clone LD27322 Report

Search the DGRC for LD27322

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:273
Well:22
Vector:pOT2
Associated Gene/TranscriptCG6005-RA
Protein status:LD27322.pep: gold
Preliminary Size:1398
Sequenced Size:1310

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6005 2001-01-01 Release 2 assignment
CG6005 2002-05-31 Blastp of sequenced clone
CG6005 2003-01-01 Sim4 clustering to Release 3
CG6005 2008-04-29 Release 5.5 accounting
CG6005 2008-08-15 Release 5.9 accounting
CG6005 2008-12-18 5.12 accounting

Clone Sequence Records

LD27322.complete Sequence

1310 bp (1310 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118539

> LD27322.complete
TTTCTTCAAACTTTATTGTGAAACTTGTATAAAAATTAATAAGTTATTAA
ATAAAGAATCAAACGATGGCACAAGTCGCTTTTCTGGACAACCTGCTTAG
GGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGACT
TGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCTG
GAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGAG
TTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACGT
ATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCTG
GTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTAA
CAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTCT
ACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTTC
TTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCCT
GACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAGC
AGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACGC
ACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAACA
ATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGACA
ATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGAC
ATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCTG
CATCATTGCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAGG
CGCGCAGCCTTAAGCAGTTAATCCGTAATATTGGATCGGGCAGCTCGCCT
GTGATGGGGCGCAAGGACCAGACAGCCAGTTCTCTGGGAGAAAAGTCCAC
CAAACGCAGGTCTGGCAGTCTGGGACGCAGTTGGATTTAGGAACCCACGT
ATGTAACTAAACAAACCCAAAAGTATTTTCCAAAAGGTAATCGCAAGTGT
GTATTAGAAAGTTGATAGCTTCGAGATCAAAATTTAGTCCTTTAGTTTTA
AAATTAGTTAATTCGTAGGCATTCCATATATTATACATTTTTGTCTACCC
CTTTAAAACCGAATCATAAACGCTAAATACCCAAATATTTAATATTCATA
AATATAGATAATATACACTAAAAATAAATGTCAAAGAAATTTAAAAAAAA
AAAAAAAAAA

LD27322.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-RA 1479 CG6005-RA 45..1343 1..1299 6480 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14846584..14847425 1292..451 4180 99.8 Minus
chr3R 27901430 chr3R 14847684..14847992 309..1 1545 100 Minus
chr3R 27901430 chr3R 14847487..14847628 450..309 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19022594..19023442 1299..451 4230 99.9 Minus
3R 32079331 3R 19023701..19024009 309..1 1545 100 Minus
3R 32079331 3R 19023504..19023645 450..309 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18763425..18764273 1299..451 4230 99.8 Minus
3R 31820162 3R 18764532..18764840 309..1 1545 100 Minus
3R 31820162 3R 18764335..18764476 450..309 710 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:37:20 has no hits.

LD27322.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:38:23 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14846584..14847425 451..1292 99 <- Minus
chr3R 14847487..14847627 310..450 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:33 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 1..975 66..1040 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:12 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 1..975 66..1040 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:07:15 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 1..975 66..1040 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:49 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 1..975 66..1040 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:36:01 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 1..975 66..1040 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:20 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 14..1305 1..1292 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:12 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 14..1305 1..1292 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:07:15 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 14..1305 1..1292 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:49 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 14..1305 1..1292 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:36:01 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 22..1313 1..1292 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:23 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19022601..19023442 451..1292 100 <- Minus
3R 19023504..19023644 310..450 100 <- Minus
3R 19023701..19024009 1..309 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:23 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19022601..19023442 451..1292 100 <- Minus
3R 19023504..19023644 310..450 100 <- Minus
3R 19023701..19024009 1..309 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:23 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19022601..19023442 451..1292 100 <- Minus
3R 19023504..19023644 310..450 100 <- Minus
3R 19023701..19024009 1..309 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:07:15 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14848323..14849164 451..1292 100 <- Minus
arm_3R 14849226..14849366 310..450 100 <- Minus
arm_3R 14849423..14849731 1..309 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:12 Download gff for LD27322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18763432..18764273 451..1292 100 <- Minus
3R 18764335..18764475 310..450 100 <- Minus
3R 18764532..18764840 1..309 100   Minus

LD27322.pep Sequence

Translation from 65 to 1039

> LD27322.pep
MAQVAFLDNLLREYLVFRGFSSTLKALDLEQRTEKDQHFRAERILEQFNN
AVQASDLQALRSLWFHLDNNIFSKLEHTYAVAVKKLENSLLKYYLVTAYS
SNRPEKVSEFFNKLAGDLQQQSEWKDWFYFPFCKNAEESPTFALFFTKQW
QDTLLLSLRNFLTTVYQCLPQPTFVRAEQEAAHMQRLSEDNAGLRTRVLN
LQQELNQMTQQQSGTAAASGSSLGGGVDNGARRRSVYRQQQSLSDILPFD
ISPPGHIVDDFCIIASEANSVSQASDAQARSLKQLIRNIGSGSSPVMGRK
DQTASSLGEKSTKRRSGSLGRSWI*

LD27322.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23007-PA 328 GF23007-PA 29..328 23..324 1429 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16229-PA 326 GG16229-PA 1..326 1..324 1680 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22513-PA 315 GH22513-PA 1..315 1..324 1120 70.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-PB 324 CG6005-PB 1..324 1..324 1653 100 Plus
CG6005-PA 324 CG6005-PA 1..324 1..324 1653 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22224-PA 319 GI22224-PA 1..319 1..324 1227 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24103-PA 320 GL24103-PA 1..320 1..324 1378 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19288-PA 320 GA19288-PA 1..320 1..324 1384 81.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23370-PA 320 GM23370-PA 1..320 1..324 1678 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20139-PA 320 GD20139-PA 1..320 1..324 1666 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24346-PA 316 GJ24346-PA 1..316 1..324 1249 76.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12064-PA 324 GK12064-PA 1..324 1..324 1349 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25157-PA 326 GE25157-PA 1..326 1..324 1571 93.9 Plus

LD27322.hyp Sequence

Translation from 65 to 1039

> LD27322.hyp
MAQVAFLDNLLREYLVFRGFSSTLKALDLEQRTEKDQHFRAERILEQFNN
AVQASDLQALRSLWFHLDNNIFSKLEHTYAVAVKKLENSLLKYYLVTAYS
SNRPEKVSEFFNKLAGDLQQQSEWKDWFYFPFCKNAEESPTFALFFTKQW
QDTLLLSLRNFLTTVYQCLPQPTFVRAEQEAAHMQRLSEDNAGLRTRVLN
LQQELNQMTQQQSGTAAASGSSLGGGVDNGARRRSVYRQQQSLSDILPFD
ISPPGHIVDDFCIIASEANSVSQASDAQARSLKQLIRNIGSGSSPVMGRK
DQTASSLGEKSTKRRSGSLGRSWI*

LD27322.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-PB 324 CG6005-PB 1..324 1..324 1653 100 Plus
CG6005-PA 324 CG6005-PA 1..324 1..324 1653 100 Plus