Clone LD27336 Report

Search the DGRC for LD27336

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:273
Well:36
Vector:pOT2
Associated Gene/TranscriptCG4364-RA
Protein status:LD27336.pep: gold
Preliminary Size:2053
Sequenced Size:2141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4364 2001-01-01 Release 2 assignment
CG4364 2001-11-29 Blastp of sequenced clone
CG4364 2008-04-29 Release 5.5 accounting
CG4364 2008-08-15 Release 5.9 accounting
CG4364 2008-12-18 5.12 accounting

Clone Sequence Records

LD27336.complete Sequence

2141 bp (2141 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069545

> LD27336.complete
TCACACTTCCTTTCCACGCGAAACCAACAACACAAAAAACGTGTGTTTTG
GTCAACAGCGTGTTTTCTTTAAAATAAATCTGTATAGAACAGATTTAACT
TGACAAGAAGTGCATTTTCATAAACCGGCACAATGAGACGACCCAAGAAG
TACGAGTCCGGTGAGGCTACGCAGTACATTAGTCGCCGGGCTGCGCTCAG
GAAACTCCAGCTCTCGCTGAACGATTTCCGGAGGCTGTGCATCCTGAAGG
GCGTCTATCCCCGGGAACCGAAACATAGGCGTAGAGCTCAAAAGGGATCT
TCGGAGATCAAGGTGCTTTATCACACCAAGGACATTCGCTTTCTGCTGCA
TGAGTCGATTGTGTGGACGCTGCGTGACTACAAGATCTTTGCCAAGAAGA
GCAATCGCGATCGTGCCATCAAGGATTTCCGCAACCTGAAGCGTCGATTG
GCCCTGTTTCCCGAAATCAAACTCGATCACATTGTCAAAGAGCGCTATCC
TACCTTCATCGATGCCCTCAAGGATCTGGATGATTGTCTGACGCTGCTCT
TTCTGTTCAGCACCTTTCCCTCGCTGCACTTGATTCCCAGGGAGCAGTCG
AATCTGTGCCGCCGTCTGACTATTGAGTTCCTACACTACGTGATCGCGTC
AAAGTCGCTGCGCAAGGTGTTCATCTCCATCAAAGGCTACTACTTCCAAG
CGGAGATCAAGGGCCAGAAGGTCACTTGGATTGTGCCGCATTACTATCCG
TTCAAGCCACAGTCACGCCAGGAGGTGGACTTCAAGGTGATGTCCATCTT
TGTGGAGTTCTACACCATTATGCTGGGCTTCACCAACTTCCGGCTATTCC
ATGGCCTGAATCTGGCCTATCCACCACAATTCCCAAGCAGCGTGCTTCAG
GACAGCGAAGAGTCCCTGAAGGATGAGGCCAGCTTCGTATCTGACCGCAT
TGCAGCCTTGAACTTCGAGCTACTGCGCACGGACAAGGTGCAGGAGGATG
AGGAGGAGCTGGACATTGACATGGAACTTTTGGAGCAGGACGGCGACTCG
AAGCGCATCATCAAAATGAAGCAGGAGGCGCAGGAAGTGAGCCGTCTACG
CACCCTATTCAAGGGCTTGAAGTTCTTTATCAATCGCGAAGTTCCGCGCG
AGCCCCTAGTCATCCTCATCCGTTCCTTTGGCGGCAAGGTGTCCTGGGAC
TCGTCTATCTTCGCTGGCTCAACCTATGACGAAGGTGATGAGACCATCAC
CCACCAGATCGTGGACAGGCCCAGCATTACCACGCAATACATCTCGCGCG
ACTATATCCAGCCACAGTGGGTCTTCGACTGCGTCAATCAGCGCCAGCTG
CTGCCCACTAACAAGTACTTCATCGGCGAGACACTGCCACCGCACCTGTC
GCCATTCGTGGACTCCAAGAGGGACTCGTACATACCGCCGGAAGAGAAGG
CCCTCCTGGATCCCTCCCTGATCGAAACACATGCCCAAAGCGATGACGAC
TCCGAGGACGAAGCTCAGGAGGAAGAGGAGACTGTGGACCAAGAGCTGCT
CGATGCGCAACTGCAGCTGGCCTATCAACAGGAAACGGCTGAGTACAAGA
AGTACGGCGGTCCCGATGGCGTCAACGAAGACGAGGAGGATCCGGATGAT
GAAGATGATAATGAAGACGACGATGAAGAGGAGGAAGAGCTCGACGAGAA
GACCAAGCGTCTGCAGGAGGAGAAACAGAAGATGTCCGTGCAGTCGGGCA
AGGTGCACAAGGTCAACAAGCGGCAGGTGCACAAGGCCGAGGTCGATGAG
CACCGCCTGCAAGCGCGTATGGTGAAGCCCCGTCATCGCAATCTGTTCCG
GAAACTCATCCGCGAGAAGCAGACTAAGGAAAAGGAGGAATGGCTGTTGC
GCAAGAAGCGACGAACCATCGAGGCCAACGAGAAGGAGGCCCGGAAGACG
GCCAAGCGGGAGGCACGCAAGGAAGCGGCGGCTGCAGCTGCCAAGGCTTC
CAAGCTGGGCAAGTGAGCGAAGAGTCTGCTCGGGGGGATCTGTGTCTTGA
TTTAGGTTTAAATAATAAACAACGAAAATGTAAATGAAACTGAATGGAAT
ATAATTTTATTTCGTATTCGAGAAAAAAAAAAAAAAAAAAA

LD27336.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4364-RA 2275 CG4364-RA 83..2205 1..2123 10615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9708447..9709547 1483..383 5325 98.9 Minus
chr2L 23010047 chr2L 9707746..9708385 2122..1483 3080 98.8 Minus
chr2L 23010047 chr2L 9709607..9709842 384..149 1090 97.5 Minus
chr2L 23010047 chr2L 9709945..9710094 150..1 720 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9709622..9710722 1483..383 5505 100 Minus
2L 23513712 2L 9708920..9709560 2123..1483 3205 100 Minus
2L 23513712 2L 9710782..9711017 384..149 1180 100 Minus
2L 23513712 2L 9711120..9711269 150..1 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9709622..9710722 1483..383 5505 100 Minus
2L 23513712 2L 9708920..9709560 2123..1483 3205 100 Minus
2L 23513712 2L 9710782..9711017 384..149 1180 100 Minus
2L 23513712 2L 9711120..9711269 150..1 750 100 Minus
Blast to na_te.dros performed 2019-03-16 21:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 6969..7020 1911..1962 116 69.2 Plus

LD27336.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:31 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9709945..9710094 1..150 98   Minus
chr2L 9707746..9708384 1484..2122 98 <- Minus
chr2L 9708447..9709545 385..1483 98 <- Minus
chr2L 9709607..9709840 151..384 97 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:34 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..1884 133..2016 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:50 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..1884 133..2016 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:57 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..1884 133..2016 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:07 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..1884 133..2016 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:38 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..1884 133..2016 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:54 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..2122 1..2122 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:50 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..2122 1..2122 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:57 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 3..2124 1..2122 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:07 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 1..2122 1..2122 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:38 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
CG4364-RA 3..2124 1..2122 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:31 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9708921..9709559 1484..2122 100 <- Minus
2L 9709622..9710720 385..1483 100 <- Minus
2L 9710782..9711015 151..384 100 <- Minus
2L 9711120..9711269 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:31 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9708921..9709559 1484..2122 100 <- Minus
2L 9709622..9710720 385..1483 100 <- Minus
2L 9710782..9711015 151..384 100 <- Minus
2L 9711120..9711269 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:31 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9708921..9709559 1484..2122 100 <- Minus
2L 9709622..9710720 385..1483 100 <- Minus
2L 9710782..9711015 151..384 100 <- Minus
2L 9711120..9711269 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:57 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9708921..9709559 1484..2122 100 <- Minus
arm_2L 9709622..9710720 385..1483 100 <- Minus
arm_2L 9710782..9711015 151..384 100 <- Minus
arm_2L 9711120..9711269 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:32 Download gff for LD27336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9708921..9709559 1484..2122 100 <- Minus
2L 9709622..9710720 385..1483 100 <- Minus
2L 9710782..9711015 151..384 100 <- Minus
2L 9711120..9711269 1..150 100   Minus

LD27336.hyp Sequence

Translation from 132 to 2015

> LD27336.hyp
MRRPKKYESGEATQYISRRAALRKLQLSLNDFRRLCILKGVYPREPKHRR
RAQKGSSEIKVLYHTKDIRFLLHESIVWTLRDYKIFAKKSNRDRAIKDFR
NLKRRLALFPEIKLDHIVKERYPTFIDALKDLDDCLTLLFLFSTFPSLHL
IPREQSNLCRRLTIEFLHYVIASKSLRKVFISIKGYYFQAEIKGQKVTWI
VPHYYPFKPQSRQEVDFKVMSIFVEFYTIMLGFTNFRLFHGLNLAYPPQF
PSSVLQDSEESLKDEASFVSDRIAALNFELLRTDKVQEDEEELDIDMELL
EQDGDSKRIIKMKQEAQEVSRLRTLFKGLKFFINREVPREPLVILIRSFG
GKVSWDSSIFAGSTYDEGDETITHQIVDRPSITTQYISRDYIQPQWVFDC
VNQRQLLPTNKYFIGETLPPHLSPFVDSKRDSYIPPEEKALLDPSLIETH
AQSDDDSEDEAQEEEETVDQELLDAQLQLAYQQETAEYKKYGGPDGVNED
EEDPDDEDDNEDDDEEEEELDEKTKRLQEEKQKMSVQSGKVHKVNKRQVH
KAEVDEHRLQARMVKPRHRNLFRKLIREKQTKEKEEWLLRKKRRTIEANE
KEARKTAKREARKEAAAAAAKASKLGK*

LD27336.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4364-PA 627 CG4364-PA 1..627 1..627 3231 100 Plus

LD27336.pep Sequence

Translation from 132 to 2015

> LD27336.pep
MRRPKKYESGEATQYISRRAALRKLQLSLNDFRRLCILKGVYPREPKHRR
RAQKGSSEIKVLYHTKDIRFLLHESIVWTLRDYKIFAKKSNRDRAIKDFR
NLKRRLALFPEIKLDHIVKERYPTFIDALKDLDDCLTLLFLFSTFPSLHL
IPREQSNLCRRLTIEFLHYVIASKSLRKVFISIKGYYFQAEIKGQKVTWI
VPHYYPFKPQSRQEVDFKVMSIFVEFYTIMLGFTNFRLFHGLNLAYPPQF
PSSVLQDSEESLKDEASFVSDRIAALNFELLRTDKVQEDEEELDIDMELL
EQDGDSKRIIKMKQEAQEVSRLRTLFKGLKFFINREVPREPLVILIRSFG
GKVSWDSSIFAGSTYDEGDETITHQIVDRPSITTQYISRDYIQPQWVFDC
VNQRQLLPTNKYFIGETLPPHLSPFVDSKRDSYIPPEEKALLDPSLIETH
AQSDDDSEDEAQEEEETVDQELLDAQLQLAYQQETAEYKKYGGPDGVNED
EEDPDDEDDNEDDDEEEEELDEKTKRLQEEKQKMSVQSGKVHKVNKRQVH
KAEVDEHRLQARMVKPRHRNLFRKLIREKQTKEKEEWLLRKKRRTIEANE
KEARKTAKREARKEAAAAAAKASKLGK*

LD27336.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21889-PA 627 GF21889-PA 1..627 1..627 2889 93.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24014-PA 629 GG24014-PA 1..629 1..627 3247 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25074-PA 635 GH25074-PA 1..633 1..626 2764 88.5 Plus
Dgri\GH23436-PA 201 GH23436-PA 1..179 435..606 515 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4364-PA 627 CG4364-PA 1..627 1..627 3231 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18209-PA 631 GI18209-PA 1..629 1..626 2886 90 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19215-PA 631 GL19215-PA 1..613 1..609 2779 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18135-PA 631 GA18135-PA 1..613 1..609 2779 89.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12330-PA 627 GM12330-PA 1..627 1..627 3287 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22342-PA 627 GD22342-PA 1..627 1..627 3304 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14807-PA 633 GJ14807-PA 1..610 1..605 2779 89.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25349-PA 634 GK25349-PA 1..610 1..602 2757 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10391-PA 628 GE10391-PA 1..628 1..627 3246 97.8 Plus