Clone LD27370 Report

Search the DGRC for LD27370

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:273
Well:70
Vector:pOT2
Associated Gene/TranscriptCG45071-RA
Protein status:LD27370.pep: gold
Preliminary Size:1817
Sequenced Size:1596

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6854 2001-11-29 Blastp of sequenced clone
CG6854 2003-01-01 Sim4 clustering to Release 3
CG6854 2008-04-29 Release 5.5 accounting
CG6854 2008-08-15 Release 5.9 accounting
CG6854 2008-12-18 5.12 accounting

Clone Sequence Records

LD27370.complete Sequence

1596 bp (1596 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069546

> LD27370.complete
ATTAAATAAAGTGTGCCCGCAAAATAGAGACAAAAGTGCGAAATAAAATA
TATAAAACTCACTCAATCACTTTGAGAGCGCTAAGATGGCGCCAAAAAAG
TCCACCATTGTGCTCAATGTGGAGCAGTTTATTCACGACATCGAGGAGCG
CCCGGCCATCTGGAACCGCAATTTCCACTGCAACAAGGCCTTCCTCGAGC
AGATGTGGGACGAGCTGAGCGGAGCGCACAAACTGCCAAAGATCGTTCTC
AAGGCCAAATGGAAGGGACTTCGAGACAATTTCCGTGTGGAGTACAAAAG
GATACCGCGGGCGGATAACGGTGATTTTATGGTGGATCCGGCCACCTTTG
AGTCCAAGTGGCTGCACTACTATGCATTGTTGTTTTTAACTGATCACATG
CGTCATCGTTTGCCAAAGAACGAACAGGATCAGTCATTTTACTTCAGCCA
GCAAAGCGAGGACTGTGAAAAGACAGTGGTGGAGCCGGATTTAACAAACG
GTCTAATACGTCGTCTGCAGGACAGCGACGAGGATTACGACGAGGAGGAA
ATGGAGGCGGACGGAGAGGCTAGCGAAGCCACCATGGAGGAAACGATGCC
CACGCCACCGGCTGCGCATCAAATGAATCAAGTTAGCACCACACCACTGG
CCACCGGAGCTTTGCGAGCCCAAGAAGAGGCACATCAGCACGCTTTAATT
AAGGCAGGATTACTCCGCGCTCAGTTGATGGAGCTGGAAAAGGAGGCGGA
GGACTTGAGCAGAAAGCCACCTCCGCCACAGCAAATGACATCTCCAGTGG
CACCCTCACTACAAGTGCTAGTGGAACCACCAGCCGCACACTGTTCTCCA
CCGCCAATGGTGACCACCACATCCGCACAAGTACAACAACCGGGCTCAGC
AGCTGTTCTGGCGCCGGCAACGACCACATCCGCGTCATCTGTATCCTCGA
ATGGAGCGCCAATGGGCGGCAAGAGATCTGTGTCGCCACCGCCTCTATAC
AACAAAGCACACCATCCGCTGGCCACTCTGGCAGCAGCACATCTTGCGGC
CAAAGACCGAAATGAGGATTTCGGACCCACCTCTGCTGTAGGAGGAAACG
GAGATCACCTGAGCTTCACTCAACACTCCTACGCCAATGGACTGATACCC
GCCCTTAAGCTGAAGCGCCCGCGTCTCTCCGAGGATAGCAATTTTAATGG
TTCCTCGACAATGGACACTCCGCTCGTACCAGAGGACGATGACTACCACT
ACTTGCTCAGCCTACATCCGTACATGAAGCAGCTGACCGCAGCCCAGAAG
CTGCGCATACGCACCAAGATACAAAAGCTCATCTTCAAGGAACTCTACAA
AGAAGATCTTGAGGAGTCCAAGTAGTGGAACAGCTCAGAATGCCTAGATT
AAGCTCAAGACTGTACATACGCCCACTAGCCTAGATCGTAAGCATTATAC
TTAGTTCGTGTCCATGCCATGCTATTTGATTGATTTCTAGTTGAGCGCCA
CTCCAAGGAAAGCTGGGAGTGCGCCATTTACGCCTAAGCACAAATACCCT
GGAAATAAAAATGTAACATTAAAATGAAAAAAAAAAAAAAAAAAAA

LD27370.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854.c 1756 CG6854.c 174..1750 1..1577 7885 100 Plus
CG6854-RA 1872 CG6854-RA 290..1866 1..1577 7885 100 Plus
CG6854.a 1722 CG6854.a 527..1716 388..1577 5950 100 Plus
CG6854.a 1722 CG6854.a 290..528 1..239 1195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15099620..15100813 383..1576 5835 99.2 Plus
chr3L 24539361 chr3L 15098811..15099046 4..239 1180 100 Plus
chr3L 24539361 chr3L 15099417..15099574 236..393 760 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15109537..15110731 383..1577 5960 99.9 Plus
3L 28110227 3L 15108720..15108958 1..239 1195 100 Plus
3L 28110227 3L 15109334..15109491 236..393 760 98.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15102637..15103831 383..1577 5960 99.9 Plus
3L 28103327 3L 15101820..15102058 1..239 1195 100 Plus
3L 28103327 3L 15102434..15102591 236..393 760 98.7 Plus
Blast to na_te.dros performed on 2019-03-16 04:07:30 has no hits.

LD27370.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:08:29 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15098806..15099046 1..239 99 -> Plus
chr3L 15099421..15099570 240..389 100 -> Plus
chr3L 15099627..15100813 390..1576 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:39 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RA 1..1290 86..1375 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:52 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RA 1..1290 86..1375 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:28 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 1..1290 86..1375 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:10 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RA 1..1290 86..1375 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:27:35 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG45071-RA 1..1290 86..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:57 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RA 290..1865 1..1576 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:52 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RA 290..1865 1..1576 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:28 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 292..1867 1..1576 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:10 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RA 290..1865 1..1576 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:27:35 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
CG45071-RA 292..1867 1..1576 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:29 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15108720..15108958 1..239 100 -> Plus
3L 15109338..15109487 240..389 100 -> Plus
3L 15109544..15110730 390..1576 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:29 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15108720..15108958 1..239 100 -> Plus
3L 15109338..15109487 240..389 100 -> Plus
3L 15109544..15110730 390..1576 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:29 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15108720..15108958 1..239 100 -> Plus
3L 15109338..15109487 240..389 100 -> Plus
3L 15109544..15110730 390..1576 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:28 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15101820..15102058 1..239 100 -> Plus
arm_3L 15102438..15102587 240..389 100 -> Plus
arm_3L 15102644..15103830 390..1576 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:35 Download gff for LD27370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15101820..15102058 1..239 100 -> Plus
3L 15102438..15102587 240..389 100 -> Plus
3L 15102644..15103830 390..1576 100   Plus

LD27370.pep Sequence

Translation from 85 to 1374

> LD27370.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PKIVLKAKWKGLRDNFRVEYKRIPRADNGDFMVDPATFESKWLHYYALLF
LTDHMRHRLPKNEQDQSFYFSQQSEDCEKTVVEPDLTNGLIRRLQDSDED
YDEEEMEADGEASEATMEETMPTPPAAHQMNQVSTTPLATGALRAQEEAH
QHALIKAGLLRAQLMELEKEAEDLSRKPPPPQQMTSPVAPSLQVLVEPPA
AHCSPPPMVTTTSAQVQQPGSAAVLAPATTTSASSVSSNGAPMGGKRSVS
PPPLYNKAHHPLATLAAAHLAAKDRNEDFGPTSAVGGNGDHLSFTQHSYA
NGLIPALKLKRPRLSEDSNFNGSSTMDTPLVPEDDDYHYLLSLHPYMKQL
TAAQKLRIRTKIQKLIFKELYKEDLEESK*

LD27370.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23684-PA 1010 GF23684-PA 1..425 1..429 1885 88.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15717-PA 430 GG15717-PA 1..430 1..429 2251 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14829-PA 678 GH14829-PA 1..103 1..103 569 95.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG45071-PA 429 CG45071-PA 1..429 1..429 2248 100 Plus
CG45071-PB 379 CG45071-PB 1..379 1..429 1822 85.1 Plus
CTPsyn-PB 623 CG45070-PB 1..54 1..54 281 96.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13933-PA 689 GI13933-PA 1..103 1..103 564 95.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24720-PA 928 GL24720-PA 1..334 1..334 1401 83.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23623-PA 690 GA23623-PA 1..103 1..103 576 96.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25504-PA 429 GM25504-PA 1..429 1..429 2282 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14523-PA 1013 GD14523-PA 1..428 1..428 2269 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13723-PA 665 GJ13723-PA 1..103 1..103 572 96.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17769-PA 738 GK17769-PA 56..149 52..145 503 91.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22048-PA 429 GE22048-PA 1..429 1..429 2262 97.9 Plus

LD27370.hyp Sequence

Translation from 85 to 1374

> LD27370.hyp
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PKIVLKAKWKGLRDNFRVEYKRIPRADNGDFMVDPATFESKWLHYYALLF
LTDHMRHRLPKNEQDQSFYFSQQSEDCEKTVVEPDLTNGLIRRLQDSDED
YDEEEMEADGEASEATMEETMPTPPAAHQMNQVSTTPLATGALRAQEEAH
QHALIKAGLLRAQLMELEKEAEDLSRKPPPPQQMTSPVAPSLQVLVEPPA
AHCSPPPMVTTTSAQVQQPGSAAVLAPATTTSASSVSSNGAPMGGKRSVS
PPPLYNKAHHPLATLAAAHLAAKDRNEDFGPTSAVGGNGDHLSFTQHSYA
NGLIPALKLKRPRLSEDSNFNGSSTMDTPLVPEDDDYHYLLSLHPYMKQL
TAAQKLRIRTKIQKLIFKELYKEDLEESK*

LD27370.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG45071-PA 429 CG45071-PA 1..429 1..429 2248 100 Plus
CG45071-PB 379 CG45071-PB 1..379 1..429 1822 85.1 Plus
CTPsyn-PB 623 CG45070-PB 1..54 1..54 281 96.3 Plus