Clone LD27389 Report

Search the DGRC for LD27389

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:273
Well:89
Vector:pOT2
Associated Gene/TranscriptAats-phe-RA
Protein status:LD27389.pep: gold
Preliminary Size:1550
Sequenced Size:1505

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13348 2001-01-01 Release 2 assignment
CG13348 2001-09-19 Blastp of sequenced clone
CG13348 2003-01-01 Sim4 clustering to Release 3
Aats-phe 2008-04-29 Release 5.5 accounting
Aats-phe 2008-08-15 Release 5.9 accounting
Aats-phe 2008-12-18 5.12 accounting

Clone Sequence Records

LD27389.complete Sequence

1505 bp (1505 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058580

> LD27389.complete
CTTCCAAGTTATAACAAAAAATGCAATAAATAGTTGCATCGAATCAATAA
AGTCCCTCCAATATGCTTCTGACGCTTCGAGTGCAGGGAGCACGGCACTG
GTTGAAGTCCACCCGCTGCCTGGCCAGCAGTGCGGCGCCCGCGAAGTCGC
CGTCATCGCCACCGCAGCTGGAGGTCAGTGGAAGCACGTACGCCACCGAC
GGATGGACGAACGTAACGCCCAAGATACTCTCCTACGTGGGGGCCAACAA
GCACCTGCAGACGGACCACCCGCTTTCCATCATCCGCCAGAGGATCGTAA
ACTACTTTTATGGAGCGTATCGCAACCAAAGGGGCAATCCACTATTCTCC
GTCTATGATCAAATGAATCCGGTGGTTACTGTGCAGCAGAACTTTGACAA
TCTGCTAATTCCCGCCGATCATGTGAGTCGACAGAAATCCGATTGCTATT
ACATCAATCAGCAGCATCTGCTGCGCGCCCACACCACCGCCCATCAGGTG
GAATTGATCTCGGGCGGGCTGGACAACTTTCTGGTCGTGGGCGAGGTGTA
TCGACGGGACGAAATCGATAGCACCCACTATCCGGTATTCCACCAGGCGG
ACGCTGTGCGGCTGGTCACCAAAGACAAGCTTTTCGAGCGCAATCCTGGC
CTGGAACTCTTTGAAGAGACGTGGTCGGGTACGCTGGCCGACCCCAAGCT
GATTCTGCCCTCATCCAAGTTCATGGACCAAACCAAACAGCCCTGCCACA
CGCTCGAGGCCGTCAAGTTGATGGAGCACGAGATGAAGCACGTGCTGGTT
GGCCTGACCAAGGATCTGTTTGGGCCGCGCATCAAGTACAGATGGGTGGA
CACCTATTTTCCCTTCACCCAGCCCTCCTGGGAGCTGGAGATCTATTTCA
AGGACAACTGGCTGGAGGTCTTAGGCTGCGGCATCATGCGCCACGAAATC
CTGCAGAGATCGGGCGTTCATCAATCGATTGGCTACGCCTTTGGCGTCGG
CCTGGAGCGACTGGCCATGGTGCTGTTCGATATACCTGACATCCGGCTCT
TCTGGTCGAACGACAGTGGCTTTCTGTCGCAGTTTAGCGAAAAGGATCTG
CACAATCTGCCCAAGTACAAGCCCATCTCCCACTATCCGCAGTGCACGAA
TGACTTGTCGTTCTGGCTGCCCCAGGACATTGAGGTGGATGCCGGCTTCT
CGCCGAACGACTTTTACGATCTAGTCCGCTCTGTAGCTGGTGATATGGTG
GAGCAGATCAGTCTGGTGGACAAGTTTAAGCACCCGAAAACGGGGAAATC
GAGCGTGTGCTTCCGCATTGTTTATCGCCATATGGAGCGCACCTTAACCC
AGGCGGAGGTCAACGAAATCCACAAGCAGATCGCTAGTGCGAGCGTGGAT
AGTTTCAATGTGCAAATACGTTAGTCATAGTCTAGTTCCGTTTCAATTCA
AAACCAAAAAAGAAAAACACCAGTAAAGATAGCCAACAAAAAAAAAAAAA
AAAAA

LD27389.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-phe-RA 1760 Aats-phe-RA 173..1662 1..1490 7450 100 Plus
Aats-phe.a 1482 Aats-phe.a 1..1482 1..1487 7335 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9855673..9856928 1..1256 6235 99.8 Plus
chr2R 21145070 chr2R 9856995..9857228 1254..1487 1170 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13968347..13969602 1..1256 6280 100 Plus
2R 25286936 2R 13969669..13969905 1254..1490 1185 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13969546..13970801 1..1256 6280 100 Plus
2R 25260384 2R 13970868..13971104 1254..1490 1185 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:26:35 has no hits.

LD27389.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:34 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9855673..9856928 1..1256 99 -> Plus
chr2R 9856998..9857228 1257..1487 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:42 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1362 63..1424 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:39 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1362 63..1424 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:48 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1362 63..1424 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:10 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1362 63..1424 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:04 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1362 63..1424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:02 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1487 1..1487 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:39 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1487 1..1487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:48 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 40..1526 1..1487 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:10 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 1..1487 1..1487 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:04 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-phe-RA 40..1526 1..1487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:34 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13968347..13969602 1..1256 100 -> Plus
2R 13969672..13969902 1257..1487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:34 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13968347..13969602 1..1256 100 -> Plus
2R 13969672..13969902 1257..1487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:34 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13968347..13969602 1..1256 100 -> Plus
2R 13969672..13969902 1257..1487 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:48 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9855852..9857107 1..1256 100 -> Plus
arm_2R 9857177..9857407 1257..1487 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:58 Download gff for LD27389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13969546..13970801 1..1256 100 -> Plus
2R 13970871..13971101 1257..1487 100   Plus

LD27389.pep Sequence

Translation from 62 to 1423

> LD27389.pep
MLLTLRVQGARHWLKSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTN
VTPKILSYVGANKHLQTDHPLSIIRQRIVNYFYGAYRNQRGNPLFSVYDQ
MNPVVTVQQNFDNLLIPADHVSRQKSDCYYINQQHLLRAHTTAHQVELIS
GGLDNFLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDKLFERNPGLELF
EETWSGTLADPKLILPSSKFMDQTKQPCHTLEAVKLMEHEMKHVLVGLTK
DLFGPRIKYRWVDTYFPFTQPSWELEIYFKDNWLEVLGCGIMRHEILQRS
GVHQSIGYAFGVGLERLAMVLFDIPDIRLFWSNDSGFLSQFSEKDLHNLP
KYKPISHYPQCTNDLSFWLPQDIEVDAGFSPNDFYDLVRSVAGDMVEQIS
LVDKFKHPKTGKSSVCFRIVYRHMERTLTQAEVNEIHKQIASASVDSFNV
QIR*

LD27389.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13723-PA 462 GF13723-PA 1..462 1..453 2282 91.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20415-PA 453 GG20415-PA 1..453 1..453 2409 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22827-PA 456 GH22827-PA 1..456 1..453 2187 87.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
PheRS-m-PA 453 CG13348-PA 1..453 1..453 2410 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21206-PA 459 GI21206-PA 1..459 1..453 2141 85.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20031-PA 459 GL20031-PA 1..459 1..453 2243 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12223-PA 459 GA12223-PA 1..459 1..453 2246 90.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21501-PA 417 GM21501-PA 4..417 40..453 2231 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10996-PA 452 GD10996-PA 1..452 1..453 2348 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20807-PA 462 GJ20807-PA 1..462 1..453 2183 87.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19627-PA 469 GK19627-PA 37..469 21..453 2180 91.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12575-PA 453 GE12575-PA 1..453 1..453 2403 97.1 Plus

LD27389.hyp Sequence

Translation from 62 to 1423

> LD27389.hyp
MLLTLRVQGARHWLKSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTN
VTPKILSYVGANKHLQTDHPLSIIRQRIVNYFYGAYRNQRGNPLFSVYDQ
MNPVVTVQQNFDNLLIPADHVSRQKSDCYYINQQHLLRAHTTAHQVELIS
GGLDNFLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDKLFERNPGLELF
EETWSGTLADPKLILPSSKFMDQTKQPCHTLEAVKLMEHEMKHVLVGLTK
DLFGPRIKYRWVDTYFPFTQPSWELEIYFKDNWLEVLGCGIMRHEILQRS
GVHQSIGYAFGVGLERLAMVLFDIPDIRLFWSNDSGFLSQFSEKDLHNLP
KYKPISHYPQCTNDLSFWLPQDIEVDAGFSPNDFYDLVRSVAGDMVEQIS
LVDKFKHPKTGKSSVCFRIVYRHMERTLTQAEVNEIHKQIASASVDSFNV
QIR*

LD27389.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-phe-PA 453 CG13348-PA 1..453 1..453 2410 100 Plus