Clone LD27406 Report

Search the DGRC for LD27406

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:274
Well:6
Vector:pOT2
Associated Gene/TranscriptCG8531-RA
Protein status:LD27406.pep: gold
Preliminary Size:2043
Sequenced Size:2000

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8531 2001-01-01 Release 2 assignment
CG8531 2001-11-29 Blastp of sequenced clone
CG8531 2003-01-01 Sim4 clustering to Release 3
CG8531 2008-04-29 Release 5.5 accounting
CG8531 2008-08-15 Release 5.9 accounting
CG8531 2008-12-18 5.12 accounting

Clone Sequence Records

LD27406.complete Sequence

2000 bp (2000 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069547

> LD27406.complete
TCATTGCGTAAAAGTACCCAAAAATTTCGAAATCCAAAATTAACATAGAA
CGCCGGTGAGGTCCGTGCGCTGACTCGTCCCCGCCCCTTTTCGAAGCCGA
GCAGGAACCGCGGGACTAGATCACCGACATGGCATCGGATCACGATGAGT
CCGATGCAGAGCTGGACGAGAACTACTATACGTTTCTGAATTTGCCCCGC
GATGCCACTGCGGAGCAGATCAACACGGCGTACCGGAAACAGAGCCGCAT
GTTCCACCCGGACAAGCACCTGGATCCGGATAGCAAGAAAATGGCTGAGA
TCATGTTCAACCGCACGAAGCGTGCCTACGAGGTCCTCTCTGATCCCCAA
CAGCGGGCCATCTACGACTCGGTTGGCGAGAAGGGACTACGGACCGAAGG
CTGGGAGATTCTGCACCGAACAAAGACTCCGGATGAGATTCGGGAGGAGT
ACGAGCGGCTGGCGCAGGCGGCCGCTGAAAGACGTCTACAGCAGCGGACC
AATCCTCGTGGTAACATTACCATCAACGTGAATGCCACGGAGATCTTCGC
ACCGTACGACGACTCTGAAATGCCGCACGTAGAGATCGGCTCCATGAGCA
TTGCCCAGTCCATCGAGGCTCCGATCACGCGGAAAGATATGATCATCATG
AGCGGCAACCTGTACTCATCCAATGGCAATGGTAGCGGTGGCTTCGTGAT
CGCCGGCCGACGGCTGCTCAACAAGGGCTGGATAGAGCTATGTGCCGGAG
CGGGCAACGGATTCCTTCTGGGTCTTAAGGGTGGCCGCACTCTTAGCCAA
AAGCTGACGTTGAATGGAGGCACCAATCTGAACTTTCGTGACCAAGGTGT
CATACCCGCCCTGTTCTCCACGCTGGCCGTGCAGCTAGACAAGCACACGA
TGGGTAGTCTAACACTAAACGCTGGTTCGCAATCCTCCATGTCCACACAG
ATCGATCACTCCAAGGAGACTTACTCGCTGAGTTCGTCGCTGGTGATTGG
AACACCACATGTTTACTTCGGTCTTTCCTACACCCGCAAAATGATGGAGA
ACGAGCTCAAGCTAAAACTGGCGGCAAAAGTTGGAACCTTTGGCTTTATG
GGAGAGTATGGAGTGGAGAAAAAGGTTTCCAAGTACAGTTCTGTGACAGC
GACGGTATCGATTGGCGTGCCTTCTGGAGTCATACTTAAATTTAAAATAC
TTCGTTCAAATCAATCGTATGTGTTCCCCATCCATCTAAGCGATGAAATA
GTACCAGCTGCAGTTTTCTACGCCTCGGTGACTCCAGTCATTGCGTGGTT
CTTCATCAAAAGGACTGTGATGGACCCAATGGAGGCGGAGCGAAAGAACA
TCGAGGTGGAAAGGACGAAGCGTCAGAATGAGCAGAGACTGTCCGCCAAG
AGGCACGAGGCGAGTGCTGCCGTTCATCTAATGCAGGCCACGTACAATAG
GATCATGACGGAGGAGCTGGCGAGGAATGGGCTGATTGTCACACGAGCTG
TCTACGGCTGTACCTTGGCGGGCGGCAGACAGTTCAAGCCAGAGCAATCG
CTCGACGTCACCGTAGCCATTCAATGCATGGTCAAGAACGGGACCCTGCA
GCTGCATGATTCATCAAAGAGCGACCTGCCCGGCTTCTATGATCCGGGCA
TCGGCGAAGACAAGATTCTGCGGATAGAGTACACCTATCAAAACCAGTTC
GAAGTGATTCACATCAAGGACAACGAGGCGCTGCGACTGCCGCTGCGACA
ACCGCTGTCAGGATAGTGGGGCCTTACTGCTCTGCACGACAATTAGTTTA
AATCTTCAGTTGTGTTTGTAACTTGTTTATATTCTTGATAGAAAAGACCC
ATTCCCAGGACTTGGGGGCAAATGTCAGATCGTATATTTCCCCAGTTTAC
AATACCACTCTGTAACTCGCTATTTTTGGGATACTTACGAGATCCGAACA
GCGCAATAAATCACAAAACCAAGAGAAAAAAAAAAAAAAAAAAAAAAAAA

LD27406.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531.a 2265 CG8531.a 164..2140 1..1977 9885 100 Plus
CG8531-RA 2279 CG8531-RA 172..2148 1..1977 9885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10144072..10144650 204..782 2880 99.8 Plus
chr2R 21145070 chr2R 10145231..10145654 1196..1619 2120 100 Plus
chr2R 21145070 chr2R 10145715..10146072 1618..1975 1790 100 Plus
chr2R 21145070 chr2R 10144705..10145003 780..1078 1495 100 Plus
chr2R 21145070 chr2R 10143804..10144007 1..204 1020 100 Plus
chr2R 21145070 chr2R 10145057..10145173 1079..1195 585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14256787..14257365 204..782 2895 100 Plus
2R 25286936 2R 14257946..14258369 1196..1619 2120 100 Plus
2R 25286936 2R 14258430..14258789 1618..1977 1800 100 Plus
2R 25286936 2R 14257420..14257718 780..1078 1495 100 Plus
2R 25286936 2R 14256519..14256722 1..204 1020 100 Plus
2R 25286936 2R 14257772..14257888 1079..1195 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14257986..14258564 204..782 2895 100 Plus
2R 25260384 2R 14259145..14259568 1196..1619 2120 100 Plus
2R 25260384 2R 14259629..14259988 1618..1977 1800 100 Plus
2R 25260384 2R 14258619..14258917 780..1078 1495 100 Plus
2R 25260384 2R 14257718..14257921 1..204 1020 100 Plus
2R 25260384 2R 14258971..14259087 1079..1195 585 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:26:52 has no hits.

LD27406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:47 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10143804..10144006 1..203 100 -> Plus
chr2R 10144072..10144648 204..780 99 -> Plus
chr2R 10144706..10145003 781..1078 100 -> Plus
chr2R 10145057..10145173 1079..1195 100 -> Plus
chr2R 10145231..10145654 1196..1619 100 -> Plus
chr2R 10145717..10146072 1620..1975 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:43 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 1..1638 129..1766 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:54 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 1..1638 129..1766 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:20 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 1..1638 129..1766 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:13 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 1..1638 129..1766 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:35 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 1..1638 129..1766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:59 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 59..2033 1..1975 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:53 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 59..2033 1..1975 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:20 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 27..2001 1..1975 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:13 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 59..2033 1..1975 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:35 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 27..2001 1..1975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:47 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14256519..14256721 1..203 100 -> Plus
2R 14256787..14257363 204..780 100 -> Plus
2R 14257421..14257718 781..1078 100 -> Plus
2R 14257772..14257888 1079..1195 100 -> Plus
2R 14257946..14258369 1196..1619 100 -> Plus
2R 14258432..14258787 1620..1975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:47 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14256519..14256721 1..203 100 -> Plus
2R 14256787..14257363 204..780 100 -> Plus
2R 14257421..14257718 781..1078 100 -> Plus
2R 14257772..14257888 1079..1195 100 -> Plus
2R 14257946..14258369 1196..1619 100 -> Plus
2R 14258432..14258787 1620..1975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:47 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14256519..14256721 1..203 100 -> Plus
2R 14256787..14257363 204..780 100 -> Plus
2R 14257421..14257718 781..1078 100 -> Plus
2R 14257772..14257888 1079..1195 100 -> Plus
2R 14257946..14258369 1196..1619 100 -> Plus
2R 14258432..14258787 1620..1975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:20 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10144926..10145223 781..1078 100 -> Plus
arm_2R 10145277..10145393 1079..1195 100 -> Plus
arm_2R 10144024..10144226 1..203 100 -> Plus
arm_2R 10144292..10144868 204..780 100 -> Plus
arm_2R 10145451..10145874 1196..1619 100 -> Plus
arm_2R 10145937..10146292 1620..1975 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:36 Download gff for LD27406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14257986..14258562 204..780 100 -> Plus
2R 14258620..14258917 781..1078 100 -> Plus
2R 14258971..14259087 1079..1195 100 -> Plus
2R 14259145..14259568 1196..1619 100 -> Plus
2R 14259631..14259986 1620..1975 100   Plus
2R 14257718..14257920 1..203 100 -> Plus

LD27406.hyp Sequence

Translation from 128 to 1765

> LD27406.hyp
MASDHDESDAELDENYYTFLNLPRDATAEQINTAYRKQSRMFHPDKHLDP
DSKKMAEIMFNRTKRAYEVLSDPQQRAIYDSVGEKGLRTEGWEILHRTKT
PDEIREEYERLAQAAAERRLQQRTNPRGNITINVNATEIFAPYDDSEMPH
VEIGSMSIAQSIEAPITRKDMIIMSGNLYSSNGNGSGGFVIAGRRLLNKG
WIELCAGAGNGFLLGLKGGRTLSQKLTLNGGTNLNFRDQGVIPALFSTLA
VQLDKHTMGSLTLNAGSQSSMSTQIDHSKETYSLSSSLVIGTPHVYFGLS
YTRKMMENELKLKLAAKVGTFGFMGEYGVEKKVSKYSSVTATVSIGVPSG
VILKFKILRSNQSYVFPIHLSDEIVPAAVFYASVTPVIAWFFIKRTVMDP
MEAERKNIEVERTKRQNEQRLSAKRHEASAAVHLMQATYNRIMTEELARN
GLIVTRAVYGCTLAGGRQFKPEQSLDVTVAIQCMVKNGTLQLHDSSKSDL
PGFYDPGIGEDKILRIEYTYQNQFEVIHIKDNEALRLPLRQPLSG*

LD27406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-PA 545 CG8531-PA 1..545 1..545 2790 100 Plus
CG5001-PC 346 CG5001-PC 1..76 12..91 164 42.5 Plus
CG5001-PD 350 CG5001-PD 1..76 12..91 164 42.5 Plus
CG5001-PA 350 CG5001-PA 1..76 12..91 164 42.5 Plus
CG5001-PB 350 CG5001-PB 1..76 12..91 164 42.5 Plus

LD27406.pep Sequence

Translation from 128 to 1765

> LD27406.pep
MASDHDESDAELDENYYTFLNLPRDATAEQINTAYRKQSRMFHPDKHLDP
DSKKMAEIMFNRTKRAYEVLSDPQQRAIYDSVGEKGLRTEGWEILHRTKT
PDEIREEYERLAQAAAERRLQQRTNPRGNITINVNATEIFAPYDDSEMPH
VEIGSMSIAQSIEAPITRKDMIIMSGNLYSSNGNGSGGFVIAGRRLLNKG
WIELCAGAGNGFLLGLKGGRTLSQKLTLNGGTNLNFRDQGVIPALFSTLA
VQLDKHTMGSLTLNAGSQSSMSTQIDHSKETYSLSSSLVIGTPHVYFGLS
YTRKMMENELKLKLAAKVGTFGFMGEYGVEKKVSKYSSVTATVSIGVPSG
VILKFKILRSNQSYVFPIHLSDEIVPAAVFYASVTPVIAWFFIKRTVMDP
MEAERKNIEVERTKRQNEQRLSAKRHEASAAVHLMQATYNRIMTEELARN
GLIVTRAVYGCTLAGGRQFKPEQSLDVTVAIQCMVKNGTLQLHDSSKSDL
PGFYDPGIGEDKILRIEYTYQNQFEVIHIKDNEALRLPLRQPLSG*

LD27406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13489-PA 541 GF13489-PA 1..539 1..539 2690 91.1 Plus
Dana\GF15175-PA 346 GF15175-PA 3..76 14..91 163 44.9 Plus
Dana\GF23490-PA 130 GF23490-PA 1..75 12..90 158 40.5 Plus
Dana\GF15647-PA 391 GF15647-PA 5..76 15..93 156 50 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20438-PA 540 GG20438-PA 1..539 1..539 2732 93.5 Plus
Dere\GG24779-PA 350 GG24779-PA 1..76 12..91 160 42.5 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 1..73 12..88 156 41.6 Plus
Dere\GG13187-PA 127 GG13187-PA 1..75 12..90 155 38 Plus
Dere\GG10228-PA 389 GG10228-PA 5..72 15..88 155 49.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21792-PA 538 GH21792-PA 1..537 1..538 2429 81.4 Plus
Dgri\GH10346-PA 397 GH10346-PA 5..76 15..93 169 51.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-PA 545 CG8531-PA 1..545 1..545 2790 100 Plus
CG5001-PC 346 CG5001-PC 1..76 12..91 164 42.5 Plus
CG5001-PD 350 CG5001-PD 1..76 12..91 164 42.5 Plus
CG5001-PA 350 CG5001-PA 1..76 12..91 164 42.5 Plus
CG5001-PB 350 CG5001-PB 1..76 12..91 164 42.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20540-PA 538 GI20540-PA 1..537 1..538 2426 80.3 Plus
Dmoj\GI13174-PA 352 GI13174-PA 1..73 12..88 151 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10124-PA 554 GL10124-PA 1..513 1..513 2381 84.8 Plus
Dper\GL15626-PA 318 GL15626-PA 1..76 12..91 164 43.8 Plus
Dper\GL24772-PA 392 GL24772-PA 5..76 15..93 158 50 Plus
Dper\GL25452-PA 129 GL25452-PA 3..75 14..90 146 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21141-PA 540 GA21141-PA 1..539 1..539 2511 84.8 Plus
Dpse\GA18584-PA 346 GA18584-PA 1..76 12..91 164 43.8 Plus
Dpse\GA22062-PA 392 GA22062-PA 5..76 15..93 158 50 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21524-PA 542 GM21524-PA 1..542 1..545 2835 97.1 Plus
Dsec\GM16806-PA 350 GM16806-PA 1..76 12..91 163 42.5 Plus
Dsec\GM25845-PA 389 GM25845-PA 5..78 15..92 158 49.4 Plus
Dsec\GM22099-PA 128 GM22099-PA 1..75 12..90 153 38 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11034-PA 542 GD11034-PA 1..542 1..545 2824 96.7 Plus
Dsim\GD23083-PA 346 GD23083-PA 1..76 12..91 163 42.5 Plus
Dsim\GD22085-PA 389 GD22085-PA 5..76 15..93 160 51.2 Plus
Dsim\GD12075-PA 128 GD12075-PA 1..75 12..90 153 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22390-PA 538 GJ22390-PA 1..537 1..538 2407 81.4 Plus
Dvir\GJ10994-PA 393 GJ10994-PA 5..76 15..93 163 51.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20781-PA 549 GK20781-PA 1..537 1..538 2469 82.9 Plus
Dwil\GK19161-PA 125 GK19161-PA 1..73 12..88 168 42.9 Plus
Dwil\GK15183-PA 346 GK15183-PA 1..76 12..91 165 43.8 Plus
Dwil\GK14806-PA 396 GK14806-PA 5..76 15..93 153 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13569-PA 543 GE13569-PA 1..543 1..545 2783 94.9 Plus
Dyak\GE17451-PA 350 GE17451-PA 1..76 12..91 160 42.5 Plus
Dyak\GE11908-PA 389 GE11908-PA 5..72 15..88 159 50.7 Plus
Dyak\GE22992-PA 127 GE22992-PA 1..75 12..90 154 38 Plus
Dyak\GE19512-PA 127 GE19512-PA 1..75 12..90 154 38 Plus