Clone LD27413 Report

Search the DGRC for LD27413

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:274
Well:13
Vector:pOT2
Associated Gene/TranscriptCG8079-RA
Protein status:LD27413.pep: gold
Preliminary Size:2129
Sequenced Size:2131

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8079 2001-01-01 Release 2 assignment
CG8079 2001-11-29 Blastp of sequenced clone
CG8079 2003-01-01 Sim4 clustering to Release 3
CG8079 2008-04-29 Release 5.5 accounting
CG8079 2008-08-15 Release 5.9 accounting
CG8079 2008-12-18 5.12 accounting

Clone Sequence Records

LD27413.complete Sequence

2131 bp (2131 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069548

> LD27413.complete
CCTATAAAAAGTTGATTTAGATTCGACGGTTGTTAAACAATGTCGTTACC
GGCTGAAGAGGAGGATTTGGCGGACACTGTCGCCAAGTACGATTCCATCG
AATTGAAGAGCATACAGGACCTGGAAACCTGCGAGCAGCAACAACTACTG
CAGTACGTCGAAAAGCTGCACGGGATTATCCGCAAATACGACACCAAACT
GGCGTCCTATAAACAAAAACTCCTACACTACGTAAGCCGGGAAGAAAAGG
TTTCGTGTGACAAAGCCAGCCAAGCAACTGAATCGGAATTACAAGAATGC
CAGTATTCCATGGAAAACGATGAGGATACTAACAAAAAAGACCAGCCCAA
CGATTTATCGGCGACGGACGCCTTCAGTTTTGTGGACGAAATGAGGCAGG
CAGCCAAGCACGCCGAAAACCTGAACAACTTCGTTTACGAGCACACCTCT
GGCATGTACTACGATCCCAAGACGGGATACTACTATAACGCGGAGTACGG
GCTGTACTACGATGGTAACAACGGCTGCTACTACAGCTATGATCACGCCA
AAGACTCGTACGAGTTCCACTCTCAGGCCCAGGTACAGGCGAACGATGCG
GCCAAACCGGAATCGGAGGACGAGGATTTGGAGGTGCAGTTCGATGAGCT
GGGAGGCGTCATTACGGACCACGAAACGCTGAAGAAGATTAAGGCCGAGA
AGCAAAAGGCCAAAGATCAAGCTGAAAAATCCAAGCGCAAAGCCAAGAAA
AAGAAGAGTAAAAAGCACAGCAAGAAGAGATCCAAGAAGGAGCGCCGTCA
CAAGTCCAAGAAGCGTCACAGGCATTCTGATGATGAGCGGTCTAATGATG
CCGAGGAGGGCGAGCTGTCGCAAAGCAGCGACTCCAGTTCCGACTCTAGC
AACGAGGATAGCAGCAGCAACACGGAAGACAGCAGTGTTCCAGTTTTCAA
GGCTGCCGGACGCTTTCAAGACATTGCTAAAAAGTATCCACCCTCCCTCC
GCATCATTGTCCAGGAGACTAACGTAGAGTCGCTGAAAGTGGGAAGCCTG
CATCTAATCACATACAAAGGTGGATCTCTTGGACGGGAGGGCGCTCACGA
TGTTATCATTCCGGACGTGAACGTCAGCAAGTGCCACTTAAAGTTTAAGT
ATGAGAACAAGTTGGGAATCTACCAATGTCTTGATCTGGGCTCCCGAAAC
GGTACCATTCTCAATGGATCCCCAATGTCCAGCGACGCCATGGATCTCGT
TCACGGCAGTGTTATCACTCTGGGCCAAACAAGACTACTGTGTCATGTCC
ACGAGGGTAACAGTACCTGCGGTTTGTGCGAGCCGGGCCTTTTGATAGAG
AATTCTCCGCCGGTAGTGGCCGCTGTTGCCTCATCCACCGCATCCGTATT
ATCTCACAAGGAGCAGTTAAAAAAACTGCAGCGCAAATATGGACTAGAAA
ACGAAAAATTCGTTGATACTAGCGGCAATGGGCAGTCCAACTACAATGAT
CGTGCCGCAACAAGGAGAGTCCAGGTGGGCAGCAGTACAGATAAAGAAAA
GACTGAGGTGGCTTGTGTGAACACTGAAATCGGTAGCTCTAATAAGGGTT
TTAAAATGCTGAGTAAATTGGGCTGGCAAAAGGGCGAAAAACTGGGCAAA
ACAAATGCCAGTGCTGGACTTTTGGAGCCGATCAATGTGGTAGCCAATGA
GGGCACTAGCGGTCTGGGAAACAGTGACCCAGTGCTGTCCAGCTCCAGAA
CCATTGACAAACGGAAGCTGGCCAACTTGAAGATCACTCAGGCGCGATAT
CAGCGCGCCAGTGATATGTTTGGACAATCGGATGATAGTGATTAGAAAGA
CATTTTGAATGATGTTGGAAACACATTTAATTAACAATTACTCAAACATA
TTTATAAGTGTATGTAAATATATATGTATGTATATACACATAGATTCTAT
GTATGTATATATTAATTCAAAAATCTTGCTATAAGGTTAAGCTATCAGTC
AATTAATTAATTTAGCTTCGCTTATAAACAAAAAGAATAGGGGAAGGTAA
TGTTAAATAAATACGACTTCGCACACGTTGGTCTAAACTAATTGCGAGCC
TAATGGGCATACAAAAAAAAAAAAAAAAAAA

LD27413.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2282 CG8079-RA 138..2252 1..2115 10575 100 Plus
CG8079-RB 2272 CG8079-RB 138..2246 1..2115 10460 99.7 Plus
Fs.a 3056 Fs.a 2794..3056 2115..1853 1315 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11109705..11110192 969..1456 2440 100 Plus
chr2R 21145070 chr2R 11110593..11111025 1680..2112 2165 100 Plus
chr2R 21145070 chr2R 11109251..11109635 586..970 1925 100 Plus
chr2R 21145070 chr2R 11105635..11105867 1..233 1165 100 Plus
chr2R 21145070 chr2R 11108639..11108776 356..493 690 100 Plus
chr2R 21145070 chr2R 11105923..11106046 232..355 620 100 Plus
chr2R 21145070 chr2R 11110252..11110369 1457..1574 590 100 Plus
chr2R 21145070 chr2R 11110431..11110536 1575..1680 530 100 Plus
chr2R 21145070 chr2R 11108937..11109034 492..589 490 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222495..15222982 969..1456 2440 100 Plus
2R 25286936 2R 15223383..15223818 1680..2115 2180 100 Plus
2R 25286936 2R 15222041..15222425 586..970 1925 100 Plus
2R 25286936 2R 15218425..15218657 1..233 1165 100 Plus
2R 25286936 2R 15221429..15221566 356..493 690 100 Plus
2R 25286936 2R 15218713..15218836 232..355 620 100 Plus
2R 25286936 2R 15223042..15223159 1457..1574 590 100 Plus
2R 25286936 2R 15223221..15223326 1575..1680 530 100 Plus
2R 25286936 2R 15221727..15221824 492..589 490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15223694..15224181 969..1456 2440 100 Plus
2R 25260384 2R 15224582..15225017 1680..2115 2180 100 Plus
2R 25260384 2R 15223240..15223624 586..970 1925 100 Plus
2R 25260384 2R 15219624..15219856 1..233 1165 100 Plus
2R 25260384 2R 15222628..15222765 356..493 690 100 Plus
2R 25260384 2R 15219912..15220035 232..355 620 100 Plus
2R 25260384 2R 15224241..15224358 1457..1574 590 100 Plus
2R 25260384 2R 15224420..15224525 1575..1680 530 100 Plus
2R 25260384 2R 15222926..15223023 492..589 490 100 Plus
Blast to na_te.dros performed 2019-03-16 10:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 3898..4026 2079..1954 145 60.9 Minus

LD27413.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:53:34 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11105635..11105865 1..231 100 -> Plus
chr2R 11105923..11106046 232..355 100 -> Plus
chr2R 11108639..11108775 356..492 100 -> Plus
chr2R 11108938..11109033 493..588 100 -> Plus
chr2R 11109254..11109635 589..970 100 -> Plus
chr2R 11109707..11110192 971..1456 100 -> Plus
chr2R 11110252..11110369 1457..1574 100 -> Plus
chr2R 11110431..11110536 1575..1680 100 -> Plus
chr2R 11110594..11111025 1681..2112 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:43 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 40..1845 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:55 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 40..1845 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:13:06 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 40..1845 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:14 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 40..1845 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:08 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 40..1845 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:01 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 45..2156 1..2112 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:55 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 45..2156 1..2112 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:13:06 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 45..2156 1..2112 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:14 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 45..2156 1..2112 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:08 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 45..2156 1..2112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:34 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15221728..15221823 493..588 100 -> Plus
2R 15218425..15218655 1..231 100 -> Plus
2R 15218713..15218836 232..355 100 -> Plus
2R 15221429..15221565 356..492 100 -> Plus
2R 15222044..15222425 589..970 100 -> Plus
2R 15222497..15222982 971..1456 100 -> Plus
2R 15223042..15223159 1457..1574 100 -> Plus
2R 15223221..15223326 1575..1680 100 -> Plus
2R 15223384..15223815 1681..2112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:34 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15221728..15221823 493..588 100 -> Plus
2R 15218425..15218655 1..231 100 -> Plus
2R 15218713..15218836 232..355 100 -> Plus
2R 15221429..15221565 356..492 100 -> Plus
2R 15222044..15222425 589..970 100 -> Plus
2R 15222497..15222982 971..1456 100 -> Plus
2R 15223042..15223159 1457..1574 100 -> Plus
2R 15223221..15223326 1575..1680 100 -> Plus
2R 15223384..15223815 1681..2112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:34 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15221728..15221823 493..588 100 -> Plus
2R 15218425..15218655 1..231 100 -> Plus
2R 15218713..15218836 232..355 100 -> Plus
2R 15221429..15221565 356..492 100 -> Plus
2R 15222044..15222425 589..970 100 -> Plus
2R 15222497..15222982 971..1456 100 -> Plus
2R 15223042..15223159 1457..1574 100 -> Plus
2R 15223221..15223326 1575..1680 100 -> Plus
2R 15223384..15223815 1681..2112 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:13:06 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105930..11106160 1..231 100 -> Plus
arm_2R 11106218..11106341 232..355 100 -> Plus
arm_2R 11108934..11109070 356..492 100 -> Plus
arm_2R 11109233..11109328 493..588 100 -> Plus
arm_2R 11109549..11109930 589..970 100 -> Plus
arm_2R 11110002..11110487 971..1456 100 -> Plus
arm_2R 11110547..11110664 1457..1574 100 -> Plus
arm_2R 11110726..11110831 1575..1680 100 -> Plus
arm_2R 11110889..11111320 1681..2112 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:38 Download gff for LD27413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15223243..15223624 589..970 100 -> Plus
2R 15219624..15219854 1..231 100 -> Plus
2R 15219912..15220035 232..355 100 -> Plus
2R 15222628..15222764 356..492 100 -> Plus
2R 15222927..15223022 493..588 100 -> Plus
2R 15223696..15224181 971..1456 100 -> Plus
2R 15224241..15224358 1457..1574 100 -> Plus
2R 15224420..15224525 1575..1680 100 -> Plus
2R 15224583..15225014 1681..2112 100   Plus

LD27413.hyp Sequence

Translation from 39 to 1844

> LD27413.hyp
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQ
FDELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKK
ERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSV
PVFKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGRE
GAHDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDA
MDLVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASST
ASVLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSST
DKEKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINV
VANEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDS
D*

LD27413.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PA 601 CG8079-PA 1..601 1..601 3101 100 Plus
CG8079-PB 599 CG8079-PB 1..599 1..601 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 311..601 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..183 1..183 974 100 Plus
CG8079-PE 229 CG8079-PE 1..183 1..183 974 100 Plus
CG8079-PD 250 CG8079-PD 1..183 1..183 974 100 Plus

LD27413.pep Sequence

Translation from 39 to 1844

> LD27413.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQ
FDELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKK
ERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSV
PVFKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGRE
GAHDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDA
MDLVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASST
ASVLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSST
DKEKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINV
VANEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDS
D*

LD27413.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12318-PA 611 GF12318-PA 17..611 17..601 1994 72.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20505-PA 604 GG20505-PA 1..604 1..601 2777 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20421-PA 636 GH20421-PA 19..636 17..601 1813 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PA 601 CG8079-PA 1..601 1..601 3101 100 Plus
CG8079-PB 599 CG8079-PB 1..599 1..601 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 311..601 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..183 1..183 974 100 Plus
CG8079-PE 229 CG8079-PE 1..183 1..183 974 100 Plus
CG8079-PD 250 CG8079-PD 1..183 1..183 974 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19605-PA 502 GI19605-PA 1..502 118..601 1620 70.8 Plus
Dmoj\GI19604-PA 74 GI19604-PA 12..66 11..65 188 61.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11084-PA 606 GL11084-PA 1..606 1..601 1971 72.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20808-PA 616 GA20808-PA 1..616 1..601 1961 70.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21598-PA 603 GM21598-PA 1..603 1..601 2911 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hex-C-PA 601 GD11104-PA 1..601 1..601 3108 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14969-PA 623 GJ14969-PA 19..623 17..601 1833 65.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21767-PA 615 GK21767-PA 33..615 17..601 1922 69.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13639-PA 602 GE13639-PA 1..600 1..598 2766 93.5 Plus