Clone LD27440 Report

Search the DGRC for LD27440

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:274
Well:40
Vector:pOT2
Associated Gene/Transcripte(y)3-RA
Protein status:LD27440.pep: gold
Sequenced Size:6938

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
e(y)3-RA 2009-06-22 Replacement based on scoring

Clone Sequence Records

LD27440.complete Sequence

6938 bp assembled on 2009-09-02

GenBank Submission: BT099689.1

> LD27440.complete
TCGTGACGAGTACCTCGGAATCGAAAAGAAAAAAACATAAGCAGACAGGC
GAAACAGAGCATTCCGTTCAATAATGAATGCATAAGAACGTTCGACGCGC
GCCGAGAACCAGTCTGCATACGAGTCGTGCGTGCGGCCAGCGTGTTGGAT
ATATTTTTTTGAGGTTTGCGCCAGTTTCCAATGCACTCTCGTGTCGCCCT
GCCTTCTGTACCATCGAATTTGAATCGTTAAAAGTGCGTGGAAAAGTGTA
CGAATCGAAACCAATACACGGAAAGTGGGACAACGGCGACTGAGAGAGCT
CGTTGCGCTTGTCTCTGTGTCGCTGCCTTTGTGTGCGTACGACTGAGCGT
GTGTGTGTGTGTGCCGTTCTGTTGCTGTTGTGTGTGTGTGTGTGCATGCG
TGTGCACCGCCGATGTGTGCGTGCGAGTAGTGCCTACTGCGGCCGAGAGT
CGAGTGTTGCCCGTGCTTCGAAATCGCATTGAATCGTATGGAAAAATGTG
TTTTACTTCTCGCCCAACAACGCCGAACGCCTAAAAAAGAAAATTGCCGC
ACGGCGTCGCGCAGCATCAATCAAAGTGCATAGAAATATGAGCATGCCAA
TGCCAGCAAAGGCAAAGGCAAACGAAATAGCAAATCCAAATCGCAATCGC
GAATTGTGCACGCAAATCAAAAGCAGGCGCTCTTCTACTCCACCATCTTC
TTTTGTCTGTCTCTGAGCGACGACTTTGCCGCATGGCTGGCGGCCCACTG
GACAATCGAATATAGCAATGAATGATTTACGTCAGCAGCAGATGGTAGCA
GCGACATCGTCATCAGGATCGGAATCGGGAACAGCGGTAGAATCGGCAGC
CGCCACGTCCACAGCAGGATCAGCCGGAGCAGCAGGTCGCCCCCAGTCTA
ACTGTAGCGCTAATAGCAACGCCAAGTCAGTGGCAGCGAGCAGCACGAGC
GAGGAGGAGCAGCGAGTTAGCTCCACGTCGTCGCCAGCCCAGCGGGATCA
GCAGCTGAATGCAGATCGGGACCGGGAACAGGAGCCAGAGCCACAGCAGC
AGCAGCAGCGGGAGGAGGCACTGCAGCACCAGCATAATCAGCCCGGCCAT
ATAACCAGCACCACAGCGTCGCCTCCGCCGACGCTGCCACCGCCGACGAC
GCCGTGCGACGATGCCCCAAGCACAACTGGAGCATCTGCATCGGCCAGCT
CAGCATCCGGAGAAGCACCATCAGCAGCATCAGCAGCGGGAGCAGCAGGT
GGACCGATGGCCGCTACGGCGCTTGAGGTAGAGAGCGAGGAGCGGGATGG
ACATAAGATCATCCTGAAGCTCTCCAAGCACGCCAATCCCAACTCAAACG
CAAATGAATCTCAGCCGGGCGGAGATGAGAGGCGCGTGGAGCCCCTGCGC
ATTCAGCTGCCCTGCGGCGGAGCGGAAGGAGGCTTGGTTGCGAAGCAGCA
AGATGCCTTCGATGCGGACGCCTCTTCCTGCTCCTCGTCGTGCGCCGAGG
ACGAGGTGGCTACCACCCTCGGCCAACAACTACGAAACACCCCGCACATT
GTGCCAAAGCTGACCATCCGCGCCGCGAACGAGAGGCGCGTAGGCAGCGT
GGTGCCTAAGCTGACCATCAAGTTGCCTGAGAATCCGGCTGCTTCCGGCT
CCAACTCCAACTCTGGATCGTGCTCAGCAGCTGTGAGTGGCGCCCAGTCA
GCTATGCCCGCCAAGAACGATGCCCACCTGTCCAGCCTCTCGCCCGCATC
CGCCTCGTCTTCATCTGCCTCGTCCTCCTCCTCATCGTCGTCGTCGTCCT
CACTGGCGGAGATGCAGACGGTGCCCAAGCTGATGATCAAGACAACGCTA
GCCGGTAGTAGCTGCATCAGCAGCAGTGAGGAGCTTCCGCAGCAGCAGCA
GCAGATACCAAAGTTAACAATCAAGACAGGTGGCGGCGGTCAGGAGCACG
TGCACACGGTCATAATGACGCACGACCTAAACAACGCCCAGAGCATCCCC
AAACTCACCATTAAAACCAAATCCATAGAGATGATCGAGGACGAACAGGC
GGCTAAGCTGGAGCAGCAATTGCAGCCGCTGCCCAAGCTGACCATCAAGA
ACTTATGCTCACCGAAGCACAAGGTGCGTGCAGTGCTCGAGGAGAAGCCA
CCAACGGCGGCCTCCAAGCTGGCTATCCCAAAACCCACGCCCAATCCCAC
GCCGGCTCCCATGACGAATGGCGGCGAGTCGAACAGCAGTAGTCAGGAAT
TCTGCGGCTTCTCCGACCCAGACGCAGATATAGCTGCGCCAGCCTCGGAC
GACGTTCGCCGCAATTCGGACGACATGGTGATCGACGATTCGCTCTCCAA
GGAGCACGATCCCAAGATTTTTCACAATCTACCGCCCATGCCCGCCAGCA
ACGGCATAGCCAGCGGTGGGAGTAAGGCCAGTAAAGCCAGCAAGTCTGCC
CAATCCCAGCACAACGTTGTGGACATGGTGGACCTGACCTCGTCACCGTC
GCCGGGCTCTTCGCCAACGCATGTGCCTAACAACTTCACGGGACGCATTT
CGCCGAAAGGGTTGCTCATCGACTGCCTGCGGATGCAAACTGCGATCGGC
TGTTATGTGCCCGAGGAGGCCGACAGTCGCGTTAGGCCAGCTGCGTCGCC
CAATTCGAACATATTGCTTAGCCAGCTGACGGCACCGGCTAAAAGCTTCA
CAACGACCACGCCTAAAAGCAAATCCAGCAAGTATCCCCAGCTAACGGAG
CGCCTGATGGCGAATGGAAGCGGTACCGGTGGGGGATCTGTTATTGCTGC
AGAAAGCGAGGCAGTCGTTGGTCCCTTGCCCGCCGCGAATCCCGCCCAAT
CCATAATCGAGTCCATTGAAATCCTGGACACGCCTGATGGCAGCCCGAGG
GTAGCCTACATGGACGAGGATTCTAACCCGATGCTCAACAAACATCTCCA
AACTATTCACAAGCTCGCAATGGATCACGGAGTGGAACAGCGTATGGATA
CCCAGGACAACAACAACGAGAACCACTTGAAACGCACTAACAGCGAGGGA
AACGAATCTCCCAGCAGTAGACTCCCTCCCAGCAAACAGCGACGTCTGGA
CAACGACGAGAACGACCAGCAGACGCAGAATTGCCACGATCCCGCCAGAA
AGTGCAGTGAATCACTGCAGGCGCTTCCGCCGTCACATCGCTCGCGCAAG
CAGAAGCACGAGCGAATCCTGAACACAGATCTGGAGGGTTCGCTTTTTCC
ACCCACCCAACAGCAGTCGATTTCAACGCCGGATCAAAATGGAGCCTTGT
CCTCGGAGGTCGAAGGCGAGGACGCAAAGGCGCAAGATCCGCTAGAACCG
GCGACGCCTCAGCCCCCACCGGTAGCGACGCCGGCAGGAACGGGCAAGAA
GCGTGGGCGGCCGAAGCGTATCCAAAACCAGAGCTCGCCGGATGGTGGAG
GTGCAGTTACTCCCAAACCCGGCACTCCACAGGAGGAGGCCAACAGCGCT
GTCAAGTCGCGTCGCGTACAACTGCTGCGCAAGCGACTGGCCATCGACAT
GGTGAGCGTGGGCCAAGAGCAGGCGGACATGAAAGCTAAGGAAAAGGAGT
CGTCTGTGGGCGTGCCAAATGCAAGAGTTGAAGACGGGCTTGCCGAAACT
CTGGAATCTCCAAAGACTCGCGACCATCGCCCCCTGAGAGCCACGCGCCG
CACCACGACCAGCACAAACACCAACCTGCAGCCCACGCCCAAGTCCACAA
GGAAGCGCCAGAGCAAGGCCAGTGTCCAACAAAGCCAGTTGCCGCCGCCG
ACGATGGCTCAGTTCGGTAGTTCGGAGTCCGAGTCCAACAACAACAATAA
TAGCAGCATATCCTTTGCCCTGAGCGCGCAGATCGACCTCACAATGTGCT
CGTCCAGTTCGTCGACCTCCTCTGGCGCTGCCGCCAACCAGCAGGTGATC
GGTGGAAGTGGCAGCAGCTCGATGCTACCTCCGACGACGATTCTGTCTTC
TTCGGATCCGCTGCCCGATGTCATCTTCCAGCCAAATGACTTCTCCTCTA
TCATGGCCACCCAGCAGCTGCGCTCCTCGCGCCCCTCAAGCATCAGCTGT
GGCAGTACCGGCGGTAGCCAGCCGGACTGTCACGACGAGGACAACTACAC
CAGCGCGCTGGACAATTCCGGAGACGAAACTGCGTTGCCTATGCCCCCCA
CGCGGGGACGTGGTCGTGGCCGGCGATCCAGGGGAGGCCGCGGTAGAGGA
TCTTCTTCGGTGGATCGGGCTGTCAGCGTCGGAGGCACAGCCTCCACAAC
GCCCGCCACGCAGCCTAGGGCCCCGCGAATGAGCCGAGGAGCAAGTGCCG
TAGCAAAGGCCATCGCCATGAGTCGACCACGATGCGTGGGCGGCCTCAAG
CACCAGCCCGATCCCGAGAGACTTAAAGGCTTGTTCAGTCCGTCGCCGCA
AGTGTTTGAGGAGGACACGCGTATGAGCGCCGATCTTAGCAACAGCAATC
AGTCGATGGCCAGCCTGATGGAACCCCCGCTAACGCCACAGAAGCAACCC
GACTTCCTCAACAACGAGGAGTCACAGTCGTCCATGGTGAGCAATGTGAG
CATGATGGACTCCAACCAGGGTCAGTCCGCCGACGCGATTCTGGGTTCTG
CTCTCAAACGTCCAAAGAAGAAGAAGATGGAAACTTGCGTGGCCGAAGAC
ACCGACTACAGCGCCTCCAGCATCGCCGAGTACGACTGGCCACCGCCTAA
AGGTTGCTGCCCATCAAAGAATCGGGACACCTTCATGATTCAAGAGCAGG
TGGCGCTCTATCTGGGCATTACCAGCTTTAAGCGCAAGTACCCGGATCTG
CCACGCCGATCGGTCGACATGGAGGAGCGCAATTGGCTGCAGGAGAAGGG
GCTGGTTAGCGAGAAGTTGTGCGACCTGGGCATCACCGCTGTGTGGGCCT
CCGACATATTGGACATCATGTACGCGGACTTTTTCGACAAGTACGAAGAG
TACAAGGAGTACATTCGCAGAAAGCATTTGCGCGAGATCGAGGCTAAGCA
GAAGGCCCTAGGACTCACAGTCGGGGCCGGACGAGGTCTGCAAGCTCGCG
ACCGTGCCATGCTTTCGGCCACCAAGTGGAACGCTTACTTCAACAAGTCC
CGTAAGGATGAGCGCCAGTCCTGCATGGACCTGCAGACCTTCACGATAAA
TCAGCCGCAGCCAAGGACCGCGCCCACCTGTACACGCCTAGAGCGCTCCA
CTTCGGATTTGATACGGGCAGTGGCAGAAGAGGCGAATATCCCGGCACCG
CCTAATCTCCTGCCACCCCGCGACTATGACGAGGCCTTCCGCAACTCAGA
CTACGCTTATCCACTCACGGTGGTACCGGACCAGTTCTCAATGGCCTACC
GCCAGTTTGAGCCCGCCGAGCTCAGAGCCTACCCACTGGACACGGCGCTG
GACAAGCCGCCGACCGATCTGATGGCTCAGCTGCTACAGGCAAAATCCGA
AGCTGTAGGCAGCGATGAAATCAAAACGTCCGCCCCGGCCCCCAAGGATC
TGGGGCAAGAGCAGTCCGCCATCAAATCCGTAACGGTAACGGCGCCCGTC
CGACGCAGCAGAAGGTCCACACGCCAGCAGACGGACAAGGTTCGCACGGC
TAGCAGCTCCAGCACGTCCTCCGCTCAATCGGTCTCATCCGCGTCCAGCG
GCAACGGGAGCAGCAGTGATACGGAAAGCGGCGATGAAAGCGACTTTAGC
AGCACATCGAGCTGCAGCAGTTCGACGGGTGCCTCAAGTGGAGCAGGCAG
CGAGGACGAGGATGGGAACGAGTGCTCATCGTCGGTCAGGCTGTCCACCT
GCGGCGTCTGTCTGCGCAGTCAGCATCGCAATGCTAGGGACATGCCGGAG
GCTTTCATCCGCTGTTACACATGCCGAAAGCGCGTCCATCCCAGCTGCGT
TGATATGCCACCGCGCATGGTGGGTCGCGTGAGGAACTACAATTGGCAGT
GCGCCGGGTGCAAATGCTGCATCAAGTGCCGTAGCAGCCAACGTCCAGGA
AAGATGCTCTATTGCGAGCAGTGCGACCGAGGCTACCACATCTACTGCTT
GGGCCTCAGGACAGTCCCAGATGGGCGCTGGAGCTGTGAGCGCTGCTGTT
TCTGCATGCGATGCGGGGCCACCAAGCCGGAGGGTCTGCCCCAGGTGGCC
GCTCTGTCCCAGGCGTCCGGAGGACCGTCGGCCAACGGGGATCGCTCAAA
GGCAGCGCGCAATAAGCGCTTGAAATGGGTGCACGAGTACCGCATCGATC
ATGTGACGAAGATCCGGGAGCACGCCGCCATGTTCTGCGTACCATGTGCG
CGAAACAAGCCCGCCAAGCGGCAGTCGGCGGCGGGTGCGGCCGGTGCGGC
AGCAGTTACTCCTGTCTTGGAGGCCACTTCCGCGCAAACGGATGACAGTC
CGATGCCCAGTCCCGGCCTGACAACCAACGGAGGACGCGCCCTTTCGCCA
ACGGCGGCACTGAGTCCAAAGGCAGCTGTGCCCGTGGCATCGCTGCCGCC
CGTTCTTGAAGCGACGACGGTGACCACAAATATTGCGGGAACGATAGGCA
GACGGCAGGCGGGTAATGCTGTCAATATTACAACGATGCAGTGCAGCAGC
AGCAGCAGCAGCAACTTCAGCGGGAACGGAGTCACCGAGGACGCGGCGAA
TGTCACTGCAACGGGAACGGCTACGGCGGCCGCAGGAGCACCCGCTGCCA
CTCCAATAGGCATAGCTCCGCCGCCCGTTGTTGCCTGAGTGGGGGTCATA
CGTTATTGTGCCAAGCGTACTCTAACGGACTTATAGTAAGCGCCGGACGC
GCCGCCCCTTTTACCAAGCCGCCTCCAAAGTGGTCGTAACCACAGAGCAC
AGCCGCCATCCCAAAAAAAGAAAAAAAAAAAAAAAAAA

LD27440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)3-RA 7277 e(y)3-RA 126..7063 1..6938 34660 99.9 Plus
e(y)3.b 7434 e(y)3.b 125..7062 1..6938 34660 99.9 Plus
e(y)3.c 7753 e(y)3.c 125..7062 1..6938 34660 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19522925..19525261 3071..735 11685 100 Minus
chrX 22417052 chrX 19521761..19522862 4173..3072 5450 99.6 Minus
chrX 22417052 chrX 19516754..19517557 6920..6123 3835 98.8 Minus
chrX 22417052 chrX 19526408..19527143 736..1 3680 100 Minus
chrX 22417052 chrX 19519030..19519479 5149..4700 2220 99.6 Minus
chrX 22417052 chrX 19518308..19518609 5724..5423 1510 100 Minus
chrX 22417052 chrX 19518667..19518942 5425..5150 1350 99.3 Minus
chrX 22417052 chrX 19521428..19521698 4442..4172 1325 99.3 Minus
chrX 22417052 chrX 19517943..19518154 5934..5723 1060 100 Minus
chrX 22417052 chrX 19517695..19517885 6124..5934 955 100 Minus
chrX 22417052 chrX 19519538..19519693 4699..4544 780 100 Minus
chrX 22417052 chrX 19519758..19519860 4544..4442 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19634134..19636470 3071..735 11685 100 Minus
X 23542271 X 19632970..19634071 4173..3072 5510 100 Minus
X 23542271 X 19627949..19628764 6938..6123 4050 99.8 Minus
X 23542271 X 19637617..19638352 736..1 3680 100 Minus
X 23542271 X 19630237..19630686 5149..4700 2250 100 Minus
X 23542271 X 19629515..19629816 5724..5423 1510 100 Minus
X 23542271 X 19629874..19630149 5425..5150 1380 100 Minus
X 23542271 X 19632637..19632907 4442..4172 1355 100 Minus
X 23542271 X 19629150..19629361 5934..5723 1060 100 Minus
X 23542271 X 19628902..19629092 6124..5934 955 100 Minus
X 23542271 X 19630745..19630900 4699..4544 780 100 Minus
X 23542271 X 19630965..19631067 4544..4442 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19642232..19644568 3071..735 11685 100 Minus
X 23527363 X 19641068..19642169 4173..3072 5510 100 Minus
X 23527363 X 19636047..19636862 6938..6123 4050 99.7 Minus
X 23527363 X 19645715..19646450 736..1 3680 100 Minus
X 23527363 X 19638335..19638784 5149..4700 2250 100 Minus
X 23527363 X 19637613..19637914 5724..5423 1510 100 Minus
X 23527363 X 19637972..19638247 5425..5150 1380 100 Minus
X 23527363 X 19640735..19641005 4442..4172 1355 100 Minus
X 23527363 X 19637248..19637459 5934..5723 1060 100 Minus
X 23527363 X 19637000..19637190 6124..5934 955 100 Minus
X 23527363 X 19638843..19638998 4699..4544 780 100 Minus
X 23527363 X 19639063..19639165 4544..4442 515 100 Minus
Blast to na_te.dros performed 2019-03-16 21:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2881 780..1280 301 54.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2293..2535 999..1237 232 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6898 1075..1248 186 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2392 1173..1247 170 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2218..2480 975..1248 143 56 Plus

LD27440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:48:50 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19516754..19517556 6124..6920 96 <- Minus
chrX 19526815..19527143 1..329 100   Minus
chrX 19517696..19517884 5935..6123 100 <- Minus
chrX 19517943..19518153 5724..5934 100 <- Minus
chrX 19518309..19518606 5426..5723 100 <- Minus
chrX 19518667..19518942 5150..5425 99 <- Minus
chrX 19519030..19519479 4700..5149 99 <- Minus
chrX 19519538..19519693 4544..4699 100 <- Minus
chrX 19519759..19519859 4443..4543 100 <- Minus
chrX 19521428..19521696 4174..4442 99 <- Minus
chrX 19521761..19522862 3072..4173 99 <- Minus
chrX 19522925..19524091 1905..3071 100 == Minus
chrX 19524144..19524911 1085..1852 88 == Minus
chrX 19525007..19525110 886..989 100 == Minus
chrX 19525214..19525260 736..782 100 <- Minus
chrX 19526409..19526739 405..735 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:01:14 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 1..6021 768..6788 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:11:34 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 1..6021 768..6788 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:02:46 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 1..6021 768..6788 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:29 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 1..6021 768..6788 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:13 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 1..6920 1..6920 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:11:34 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 1..6920 1..6920 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:46 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 18..6937 1..6920 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:29 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)3-RA 18..6937 1..6920 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:50 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
X 19629874..19630149 5150..5425 100 <- Minus
X 19627967..19628763 6124..6920 100 <- Minus
X 19628903..19629091 5935..6123 100 <- Minus
X 19629150..19629360 5724..5934 100 <- Minus
X 19629516..19629813 5426..5723 100 <- Minus
X 19630237..19630686 4700..5149 100 <- Minus
X 19630745..19630900 4544..4699 100 <- Minus
X 19630966..19631066 4443..4543 100 <- Minus
X 19632637..19632905 4174..4442 100 <- Minus
X 19632970..19634071 3072..4173 100 <- Minus
X 19634134..19636469 736..3071 100 <- Minus
X 19637618..19638352 1..735 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:50 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
X 19629874..19630149 5150..5425 100 <- Minus
X 19627967..19628763 6124..6920 100 <- Minus
X 19628903..19629091 5935..6123 100 <- Minus
X 19629150..19629360 5724..5934 100 <- Minus
X 19629516..19629813 5426..5723 100 <- Minus
X 19630237..19630686 4700..5149 100 <- Minus
X 19630745..19630900 4544..4699 100 <- Minus
X 19630966..19631066 4443..4543 100 <- Minus
X 19632637..19632905 4174..4442 100 <- Minus
X 19632970..19634071 3072..4173 100 <- Minus
X 19634134..19636469 736..3071 100 <- Minus
X 19637618..19638352 1..735 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:48:50 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
X 19629874..19630149 5150..5425 100 <- Minus
X 19627967..19628763 6124..6920 100 <- Minus
X 19628903..19629091 5935..6123 100 <- Minus
X 19629150..19629360 5724..5934 100 <- Minus
X 19629516..19629813 5426..5723 100 <- Minus
X 19630237..19630686 4700..5149 100 <- Minus
X 19630745..19630900 4544..4699 100 <- Minus
X 19630966..19631066 4443..4543 100 <- Minus
X 19632637..19632905 4174..4442 100 <- Minus
X 19632970..19634071 3072..4173 100 <- Minus
X 19634134..19636469 736..3071 100 <- Minus
X 19637618..19638352 1..735 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:46 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19523907..19524182 5150..5425 100 <- Minus
arm_X 19523183..19523393 5724..5934 100 <- Minus
arm_X 19523549..19523846 5426..5723 100 <- Minus
arm_X 19522000..19522796 6124..6920 100 <- Minus
arm_X 19522936..19523124 5935..6123 100 <- Minus
arm_X 19524270..19524719 4700..5149 100 <- Minus
arm_X 19524778..19524933 4544..4699 100 <- Minus
arm_X 19524999..19525099 4443..4543 100 <- Minus
arm_X 19526670..19526938 4174..4442 100 <- Minus
arm_X 19527003..19528104 3072..4173 100 <- Minus
arm_X 19528167..19530502 736..3071 100 <- Minus
arm_X 19531651..19532385 1..735 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:02:46 Download gff for LD27440.complete
Subject Subject Range Query Range Percent Splice Strand
X 19637972..19638247 5150..5425 100 <- Minus
X 19636065..19636861 6124..6920 100 <- Minus
X 19637001..19637189 5935..6123 100 <- Minus
X 19637248..19637458 5724..5934 100 <- Minus
X 19637614..19637911 5426..5723 100 <- Minus
X 19638335..19638784 4700..5149 100 <- Minus
X 19638843..19638998 4544..4699 100 <- Minus
X 19639064..19639164 4443..4543 100 <- Minus
X 19640735..19641003 4174..4442 100 <- Minus
X 19641068..19642169 3072..4173 100 <- Minus
X 19642232..19644567 736..3071 100 <- Minus
X 19645716..19646450 1..735 100   Minus

LD27440.hyp Sequence

Translation from 767 to 6787

> LD27440.hyp
MNDLRQQQMVAATSSSGSESGTAVESAAATSTAGSAGAAGRPQSNCSANS
NAKSVAASSTSEEEQRVSSTSSPAQRDQQLNADRDREQEPEPQQQQQREE
ALQHQHNQPGHITSTTASPPPTLPPPTTPCDDAPSTTGASASASSASGEA
PSAASAAGAAGGPMAATALEVESEERDGHKIILKLSKHANPNSNANESQP
GGDERRVEPLRIQLPCGGAEGGLVAKQQDAFDADASSCSSSCAEDEVATT
LGQQLRNTPHIVPKLTIRAANERRVGSVVPKLTIKLPENPAASGSNSNSG
SCSAAVSGAQSAMPAKNDAHLSSLSPASASSSSASSSSSSSSSSSLAEMQ
TVPKLMIKTTLAGSSCISSSEELPQQQQQIPKLTIKTGGGGQEHVHTVIM
THDLNNAQSIPKLTIKTKSIEMIEDEQAAKLEQQLQPLPKLTIKNLCSPK
HKVRAVLEEKPPTAASKLAIPKPTPNPTPAPMTNGGESNSSSQEFCGFSD
PDADIAAPASDDVRRNSDDMVIDDSLSKEHDPKIFHNLPPMPASNGIASG
GSKASKASKSAQSQHNVVDMVDLTSSPSPGSSPTHVPNNFTGRISPKGLL
IDCLRMQTAIGCYVPEEADSRVRPAASPNSNILLSQLTAPAKSFTTTTPK
SKSSKYPQLTERLMANGSGTGGGSVIAAESEAVVGPLPAANPAQSIIESI
EILDTPDGSPRVAYMDEDSNPMLNKHLQTIHKLAMDHGVEQRMDTQDNNN
ENHLKRTNSEGNESPSSRLPPSKQRRLDNDENDQQTQNCHDPARKCSESL
QALPPSHRSRKQKHERILNTDLEGSLFPPTQQQSISTPDQNGALSSEVEG
EDAKAQDPLEPATPQPPPVATPAGTGKKRGRPKRIQNQSSPDGGGAVTPK
PGTPQEEANSAVKSRRVQLLRKRLAIDMVSVGQEQADMKAKEKESSVGVP
NARVEDGLAETLESPKTRDHRPLRATRRTTTSTNTNLQPTPKSTRKRQSK
ASVQQSQLPPPTMAQFGSSESESNNNNNSSISFALSAQIDLTMCSSSSST
SSGAAANQQVIGGSGSSSMLPPTTILSSSDPLPDVIFQPNDFSSIMATQQ
LRSSRPSSISCGSTGGSQPDCHDEDNYTSALDNSGDETALPMPPTRGRGR
GRRSRGGRGRGSSSVDRAVSVGGTASTTPATQPRAPRMSRGASAVAKAIA
MSRPRCVGGLKHQPDPERLKGLFSPSPQVFEEDTRMSADLSNSNQSMASL
MEPPLTPQKQPDFLNNEESQSSMVSNVSMMDSNQGQSADAILGSALKRPK
KKKMETCVAEDTDYSASSIAEYDWPPPKGCCPSKNRDTFMIQEQVALYLG
ITSFKRKYPDLPRRSVDMEERNWLQEKGLVSEKLCDLGITAVWASDILDI
MYADFFDKYEEYKEYIRRKHLREIEAKQKALGLTVGAGRGLQARDRAMLS
ATKWNAYFNKSRKDERQSCMDLQTFTINQPQPRTAPTCTRLERSTSDLIR
AVAEEANIPAPPNLLPPRDYDEAFRNSDYAYPLTVVPDQFSMAYRQFEPA
ELRAYPLDTALDKPPTDLMAQLLQAKSEAVGSDEIKTSAPAPKDLGQEQS
AIKSVTVTAPVRRSRRSTRQQTDKVRTASSSSTSSAQSVSSASSGNGSSS
DTESGDESDFSSTSSCSSSTGASSGAGSEDEDGNECSSSVRLSTCGVCLR
SQHRNARDMPEAFIRCYTCRKRVHPSCVDMPPRMVGRVRNYNWQCAGCKC
CIKCRSSQRPGKMLYCEQCDRGYHIYCLGLRTVPDGRWSCERCCFCMRCG
ATKPEGLPQVAALSQASGGPSANGDRSKAARNKRLKWVHEYRIDHVTKIR
EHAAMFCVPCARNKPAKRQSAAGAAGAAAVTPVLEATSAQTDDSPMPSPG
LTTNGGRALSPTAALSPKAAVPVASLPPVLEATTVTTNIAGTIGRRQAGN
AVNITTMQCSSSSSSNFSGNGVTEDAANVTATGTATAAAGAPAATPIGIA
PPPVVA*

LD27440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)3-PE 2006 CG12238-PE 1..2006 1..2006 10312 100 Plus
e(y)3-PB 2006 CG12238-PB 1..2006 1..2006 10312 100 Plus
e(y)3-PA 2006 CG12238-PA 1..2006 1..2006 10312 100 Plus
e(y)3-PD 2011 CG12238-PD 1..2011 1..2006 10296 99.8 Plus
e(y)3-PC 2012 CG12238-PC 1..2012 1..2006 10295 99.7 Plus

LD27440.pep Sequence

Translation from 767 to 6787

> LD27440.pep
MNDLRQQQMVAATSSSGSESGTAVESAAATSTAGSAGAAGRPQSNCSANS
NAKSVAASSTSEEEQRVSSTSSPAQRDQQLNADRDREQEPEPQQQQQREE
ALQHQHNQPGHITSTTASPPPTLPPPTTPCDDAPSTTGASASASSASGEA
PSAASAAGAAGGPMAATALEVESEERDGHKIILKLSKHANPNSNANESQP
GGDERRVEPLRIQLPCGGAEGGLVAKQQDAFDADASSCSSSCAEDEVATT
LGQQLRNTPHIVPKLTIRAANERRVGSVVPKLTIKLPENPAASGSNSNSG
SCSAAVSGAQSAMPAKNDAHLSSLSPASASSSSASSSSSSSSSSSLAEMQ
TVPKLMIKTTLAGSSCISSSEELPQQQQQIPKLTIKTGGGGQEHVHTVIM
THDLNNAQSIPKLTIKTKSIEMIEDEQAAKLEQQLQPLPKLTIKNLCSPK
HKVRAVLEEKPPTAASKLAIPKPTPNPTPAPMTNGGESNSSSQEFCGFSD
PDADIAAPASDDVRRNSDDMVIDDSLSKEHDPKIFHNLPPMPASNGIASG
GSKASKASKSAQSQHNVVDMVDLTSSPSPGSSPTHVPNNFTGRISPKGLL
IDCLRMQTAIGCYVPEEADSRVRPAASPNSNILLSQLTAPAKSFTTTTPK
SKSSKYPQLTERLMANGSGTGGGSVIAAESEAVVGPLPAANPAQSIIESI
EILDTPDGSPRVAYMDEDSNPMLNKHLQTIHKLAMDHGVEQRMDTQDNNN
ENHLKRTNSEGNESPSSRLPPSKQRRLDNDENDQQTQNCHDPARKCSESL
QALPPSHRSRKQKHERILNTDLEGSLFPPTQQQSISTPDQNGALSSEVEG
EDAKAQDPLEPATPQPPPVATPAGTGKKRGRPKRIQNQSSPDGGGAVTPK
PGTPQEEANSAVKSRRVQLLRKRLAIDMVSVGQEQADMKAKEKESSVGVP
NARVEDGLAETLESPKTRDHRPLRATRRTTTSTNTNLQPTPKSTRKRQSK
ASVQQSQLPPPTMAQFGSSESESNNNNNSSISFALSAQIDLTMCSSSSST
SSGAAANQQVIGGSGSSSMLPPTTILSSSDPLPDVIFQPNDFSSIMATQQ
LRSSRPSSISCGSTGGSQPDCHDEDNYTSALDNSGDETALPMPPTRGRGR
GRRSRGGRGRGSSSVDRAVSVGGTASTTPATQPRAPRMSRGASAVAKAIA
MSRPRCVGGLKHQPDPERLKGLFSPSPQVFEEDTRMSADLSNSNQSMASL
MEPPLTPQKQPDFLNNEESQSSMVSNVSMMDSNQGQSADAILGSALKRPK
KKKMETCVAEDTDYSASSIAEYDWPPPKGCCPSKNRDTFMIQEQVALYLG
ITSFKRKYPDLPRRSVDMEERNWLQEKGLVSEKLCDLGITAVWASDILDI
MYADFFDKYEEYKEYIRRKHLREIEAKQKALGLTVGAGRGLQARDRAMLS
ATKWNAYFNKSRKDERQSCMDLQTFTINQPQPRTAPTCTRLERSTSDLIR
AVAEEANIPAPPNLLPPRDYDEAFRNSDYAYPLTVVPDQFSMAYRQFEPA
ELRAYPLDTALDKPPTDLMAQLLQAKSEAVGSDEIKTSAPAPKDLGQEQS
AIKSVTVTAPVRRSRRSTRQQTDKVRTASSSSTSSAQSVSSASSGNGSSS
DTESGDESDFSSTSSCSSSTGASSGAGSEDEDGNECSSSVRLSTCGVCLR
SQHRNARDMPEAFIRCYTCRKRVHPSCVDMPPRMVGRVRNYNWQCAGCKC
CIKCRSSQRPGKMLYCEQCDRGYHIYCLGLRTVPDGRWSCERCCFCMRCG
ATKPEGLPQVAALSQASGGPSANGDRSKAARNKRLKWVHEYRIDHVTKIR
EHAAMFCVPCARNKPAKRQSAAGAAGAAAVTPVLEATSAQTDDSPMPSPG
LTTNGGRALSPTAALSPKAAVPVASLPPVLEATTVTTNIAGTIGRRQAGN
AVNITTMQCSSSSSSNFSGNGVTEDAANVTATGTATAAAGAPAATPIGIA
PPPVVA*

LD27440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20276-PA 2062 GF20276-PA 1..2062 1..2006 5374 64.5 Plus
Dana\GF11022-PA 812 GF11022-PA 389..473 1695..1778 227 42.4 Plus
Dana\GF12873-PA 1486 GF12873-PA 544..632 1712..1800 185 36.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18040-PA 1982 GG18040-PA 1..1982 1..2006 7662 89.9 Plus
Dere\GG10866-PA 497 GG10866-PA 388..489 1695..1793 258 43.1 Plus
Dere\GG22900-PA 1481 GG22900-PA 544..632 1712..1800 182 35.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24152-PA 2464 GH24152-PA 164..1042 110..823 684 37.2 Plus
Dgri\GH21439-PA 504 GH21439-PA 395..496 1695..1793 268 44.1 Plus
Dgri\GH24152-PA 2464 GH24152-PA 1116..1263 874..999 169 39.9 Plus
Dgri\GH21693-PA 1461 GH21693-PA 550..712 1713..1860 168 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)3-PE 2006 CG12238-PE 1..2006 1..2006 10312 100 Plus
e(y)3-PB 2006 CG12238-PB 1..2006 1..2006 10312 100 Plus
e(y)3-PA 2006 CG12238-PA 1..2006 1..2006 10312 100 Plus
e(y)3-PD 2011 CG12238-PD 1..2011 1..2006 10296 99.8 Plus
e(y)3-PC 2012 CG12238-PC 1..2012 1..2006 10295 99.7 Plus
d4-PB 339 CG2682-PB 157..331 1633..1793 263 32 Plus
d4-PC 495 CG2682-PC 313..487 1633..1793 263 32 Plus
d4-PD 496 CG2682-PD 314..488 1633..1793 263 32 Plus
d4-PA 497 CG2682-PA 315..489 1633..1793 263 32 Plus
Alh-PP 1717 CG1070-PP 281..1606 9..1288 252 19.9 Plus
Muc68D-PB 1514 CG6004-PB 172..1300 12..1143 231 18.7 Plus
Muc68D-PB 1514 CG6004-PB 160..1108 306..1278 202 18.2 Plus
Alh-PD 1323 CG1070-PD 228..969 9..721 192 21.5 Plus
Alh-PA 1376 CG1070-PA 281..1022 9..721 192 21.5 Plus
Lpt-PB 1478 CG5591-PB 546..637 1714..1805 190 35.1 Plus
Lpt-PA 1482 CG5591-PA 546..637 1714..1805 190 35.1 Plus
Muc68D-PB 1514 CG6004-PB 469..1281 7..882 172 17.8 Plus
Nopp140-PB 686 CG7421-PB 63..613 11..596 165 22.7 Plus
Nopp140-PE 773 CG7421-PE 63..613 11..596 165 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21713-PA 2287 GI21713-PA 445..869 351..710 610 45.3 Plus
Dmoj\GI20660-PA 492 GI20660-PA 383..484 1695..1793 263 44.1 Plus
Dmoj\GI18846-PA 1465 GI18846-PA 547..635 1712..1800 173 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27102-PA 2142 GL27102-PA 1..2081 1..1974 4860 57.2 Plus
Dper\GL11042-PA 567 GL11042-PA 458..559 1695..1793 260 43.1 Plus
Dper\GL11176-PA 1486 GL11176-PA 544..632 1712..1800 177 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22685-PA 2132 GA22685-PA 1..2073 1..1974 4779 57.3 Plus
Dpse\GA15428-PA 507 GA15428-PA 398..499 1695..1793 260 43.1 Plus
Dpse\GA18992-PA 1486 GA18992-PA 544..632 1712..1800 176 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22724-PA 1889 GM22724-PA 1..1498 1..1502 7490 95.9 Plus
Dsec\GM22724-PA 1889 GM22724-PA 1480..1889 1608..2006 2018 92 Plus
Dsec\GM11100-PA 95 GM11100-PA 1..87 1709..1793 236 44.8 Plus
Dsec\GM16061-PA 1476 GM16061-PA 538..626 1712..1800 185 36.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15571-PA 770 GD15571-PA 1..770 1236..2006 4073 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20409-PA 490 GJ20409-PA 381..482 1695..1793 266 44.1 Plus
Dvir\GJ21880-PA 1458 GJ21880-PA 546..634 1712..1800 173 34.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25190-PA 2262 GK25190-PA 699..2047 630..1870 3184 56.6 Plus
Dwil\GK10624-PA 515 GK10624-PA 406..507 1695..1793 267 44.1 Plus
Dwil\GK15714-PA 1503 GK15714-PA 546..756 1712..1908 186 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17369-PA 2002 GE17369-PA 1..2002 1..2006 8265 91.7 Plus
Dyak\GE11247-PA 497 GE11247-PA 388..489 1695..1793 259 43.1 Plus
Dyak\GE14338-PA 1481 GE14338-PA 544..632 1712..1800 182 35.2 Plus