Clone LD27537 Report

Search the DGRC for LD27537

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:275
Well:37
Vector:pOT2
Associated Gene/TranscriptCTPsyn-RB
Protein status:LD27537.pep: gold
Preliminary Size:2515
Sequenced Size:2423

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6854 2001-09-19 Blastp of sequenced clone
CG6854 2008-04-29 Release 5.5 accounting
CG6854 2008-08-15 Release 5.9 accounting
CG6854 2008-12-18 5.12 accounting

Clone Sequence Records

LD27537.complete Sequence

2423 bp (2423 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058581

> LD27537.complete
GCTGGGGTGGTTCGCATTTTGGTTCGGGAATTCGCAATTCCGCATTTCGG
CTTCTCGACTTTTCATTCGCGCTCGTGGAAAACGCTCTCGGGACATAACG
GAATCTACGGGCCGGCGCGGCTGACCGAGCGCAAAAAAAAACTTTTCGAT
TATTATAAACTTGGCGAGACAAAAGTGCGAAATAAAATATATAAAACTCA
CTCAATCACTTTGAGAGCGCTAAGATGGCGCCAAAAAAGTCCACCATTGT
GCTCAATGTGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCT
GGAACCGCAATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGAC
GAGCTGAGCGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGA
TGGCGCCGAGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATG
TTACCCTGCATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTG
GTCATTGAGAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGT
TGTCCCACACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCC
AGACACCCGTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTG
GGAGGAACGATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCG
TCAGTTTCAGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGT
CGCTGGTTCCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACA
CAAAGTTCGGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGAT
TGTCTGCCGATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCA
GCAACTTTTGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTG
AACTCCATTTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGA
ATACCTAAATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCA
AATGCTTGCAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGTTCGC
CGTGAAGTTTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTC
GTACGCCTCCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTGAATC
GCAAACTGGAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGAAACT
TTGCATTCTGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTATGCGA
TAGCCATGGCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATGGAGG
GCAAGATTCGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATTGCTT
GGCATCTGCTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAAATAA
ACTTGGTCTCAAGGATGCAAACACCACAGAAATCGATCCGAACACAGCTA
ATGCCTTGGTCATCGATATGCCAGAGCATCACACGGGTCAATTGGGCGGC
ACTATGCGCTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTAGTGT
CATTCGCCAGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCATCGGC
ATCGTTACGAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCAAGGC
ATGCGATTTGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCATTGA
GCTCAGCGGTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAGTACT
TGTCGCGGCCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCTGGCC
TCAGTGGATCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGTCGCC
CCGCCAGCTATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTGGGCT
TGGCCGGAGCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTACACCC
ACAAATGGAATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCGACAG
CGAAGGTGCCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGTAAACTA
GTGAACGGTATCTTATATCCTAAAGTGTTTAACATCCGATTATCAGACGT
ACTTTTGTTATCGCAAAACCCCAAAAGTTTGGGATAACTTAAGTATTACT
GGGTGGGTATAATACGGTATTTGCGAATTGAAAATTTTGACCTTTTATGA
AAGAGGCATTAATAATAAGAAACCCTTTATAATTTCTCCTAAGCTTAAGT
AAACTACGATGTTACTTTCCGTACATTTTTAATTTATATGAAAATCTTAA
TTCATATATATTTTTTGGATGCGAAAAAAAAAATAACTAATGGAACAATT
TCAAAAAAAAAAAAAAAAAAAAA

LD27537.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-RB 2421 CG6854-RB 26..2421 7..2402 11980 100 Plus
CG6854.d 2093 CG6854.d 70..2093 379..2402 10120 100 Plus
CG6854-RC 2627 CG6854-RC 604..2627 379..2402 10120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15101736..15103085 1052..2402 6630 99.6 Plus
chr3L 24539361 chr3L 15101168..15101671 548..1051 2490 99.6 Plus
chr3L 24539361 chr3L 15098834..15099047 166..379 1070 100 Plus
chr3L 24539361 chr3L 15100899..15101069 379..549 855 100 Plus
chr3L 24539361 chr3L 15095980..15096139 7..166 800 100 Plus
chr3L 24539361 chr3L 15092315..15092549 2135..2370 690 87.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111653..15113006 1052..2405 6770 100 Plus
3L 28110227 3L 15111085..15111588 548..1051 2520 100 Plus
3L 28110227 3L 15108746..15108959 166..379 1070 100 Plus
3L 28110227 3L 15110816..15110986 379..549 855 100 Plus
3L 28110227 3L 15105909..15106068 7..166 800 100 Plus
3L 28110227 3L 15102254..15102488 2135..2370 690 87.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15104753..15106106 1052..2405 6770 100 Plus
3L 28103327 3L 15104185..15104688 548..1051 2520 100 Plus
3L 28103327 3L 15101846..15102059 166..379 1070 100 Plus
3L 28103327 3L 15103916..15104086 379..549 855 100 Plus
3L 28103327 3L 15099009..15099168 7..166 800 100 Plus
3L 28103327 3L 15095419..15095588 2204..2370 555 89.4 Plus
3L 28103327 3L 15095354..15095423 2135..2204 245 90 Plus
Blast to na_te.dros performed on 2019-03-16 04:08:04 has no hits.

LD27537.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:08:46 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15095974..15096139 1..166 97 -> Plus
chr3L 15098835..15099046 167..378 100 -> Plus
chr3L 15100899..15101069 379..549 100 -> Plus
chr3L 15101170..15101671 550..1051 99 -> Plus
chr3L 15101736..15103085 1052..2402 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:51 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 1..1872 225..2096 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:31 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 1..1872 225..2096 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:18:06 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 1..1872 225..2096 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:02 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 1..1872 225..2096 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:13 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 1..1872 225..2096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:51 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 20..2397 1..2378 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:31 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 20..2397 1..2378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:18:06 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 22..190 1..168 96 -> Plus
CTPsyn-RB 321..2554 169..2402 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:02 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 20..2397 1..2378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:13 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 22..2423 1..2402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:46 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15105903..15106068 1..166 97 -> Plus
3L 15108747..15108958 167..378 100 -> Plus
3L 15110816..15110986 379..549 100 -> Plus
3L 15111087..15111588 550..1051 100 -> Plus
3L 15111653..15113003 1052..2402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:46 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15105903..15106068 1..166 97 -> Plus
3L 15108747..15108958 167..378 100 -> Plus
3L 15110816..15110986 379..549 100 -> Plus
3L 15111087..15111588 550..1051 100 -> Plus
3L 15111653..15113003 1052..2402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:46 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15105903..15106068 1..166 97 -> Plus
3L 15108747..15108958 167..378 100 -> Plus
3L 15110816..15110986 379..549 100 -> Plus
3L 15111087..15111588 550..1051 100 -> Plus
3L 15111653..15113003 1052..2402 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:18:06 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15104753..15106103 1052..2402 100   Plus
arm_3L 15099003..15099168 1..166 97 -> Plus
arm_3L 15101847..15102058 167..378 100 -> Plus
arm_3L 15103916..15104086 379..549 100 -> Plus
arm_3L 15104187..15104688 550..1051 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:47 Download gff for LD27537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15104187..15104688 550..1051 100 -> Plus
3L 15101847..15102058 167..378 100 -> Plus
3L 15103916..15104086 379..549 100 -> Plus
3L 15104753..15106103 1052..2402 100   Plus
3L 15099003..15099168 1..166 97 -> Plus

LD27537.pep Sequence

Translation from 224 to 2095

> LD27537.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PSEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEKERTG
EYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTIGDIE
GMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSVRELR
GCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIYHVPL
LMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVCIAVV
GKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSEPSKY
HKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICLGLQA
AVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRLGKRI
TVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFVGTDV
DKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDRLNQY
IQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGISKSC
NGSISTSDSEGACGGVDPTNGHK*

LD27537.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23684-PA 1010 GF23684-PA 437..1010 50..623 2862 92.2 Plus
Dana\GF23684-PA 1010 GF23684-PA 1..54 1..54 290 96.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15718-PA 580 GG15718-PA 13..580 53..620 2854 93.7 Plus
Dere\GG15717-PA 430 GG15717-PA 1..51 1..51 293 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14829-PA 678 GH14829-PA 1..676 1..616 2604 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PB 623 CG45070-PB 1..623 1..623 3275 100 Plus
CTPsyn-PC 627 CG45070-PC 57..627 53..623 2991 100 Plus
CTPsyn-PA 627 CG45070-PA 57..627 53..623 2991 100 Plus
CG45071-PB 379 CG45071-PB 1..53 1..53 283 96.2 Plus
CG45071-PA 429 CG45071-PA 1..54 1..54 281 96.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13933-PA 689 GI13933-PA 1..685 1..615 2689 74.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24720-PA 928 GL24720-PA 341..921 53..622 2715 88.7 Plus
Dper\GL24720-PA 928 GL24720-PA 1..54 1..54 291 96.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23623-PA 690 GA23623-PA 1..683 1..622 2938 83.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25505-PA 585 GM25505-PA 4..584 52..622 2903 94.1 Plus
Dsec\GM25504-PA 429 GM25504-PA 1..51 1..51 294 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14523-PA 1013 GD14523-PA 414..1012 34..622 2920 91.8 Plus
Dsim\GD14523-PA 1013 GD14523-PA 1..54 1..54 290 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13723-PA 665 GJ13723-PA 1..663 1..616 2726 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17769-PA 738 GK17769-PA 165..730 53..621 2632 87.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22049-PA 583 GE22049-PA 13..582 53..622 2931 96.1 Plus
Dyak\GE22048-PA 429 GE22048-PA 1..51 1..51 293 100 Plus

LD27537.hyp Sequence

Translation from 224 to 2095

> LD27537.hyp
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PSEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEKERTG
EYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTIGDIE
GMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSVRELR
GCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIYHVPL
LMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVCIAVV
GKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSEPSKY
HKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICLGLQA
AVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRLGKRI
TVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFVGTDV
DKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDRLNQY
IQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGISKSC
NGSISTSDSEGACGGVDPTNGHK*

LD27537.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PB 623 CG45070-PB 1..623 1..623 3275 100 Plus
CTPsyn-PC 627 CG45070-PC 57..627 53..623 2991 100 Plus
CTPsyn-PA 627 CG45070-PA 57..627 53..623 2991 100 Plus
CG45071-PB 379 CG45071-PB 1..53 1..53 283 96.2 Plus
CG45071-PA 429 CG45071-PA 1..54 1..54 281 96.3 Plus