Clone LD27564 Report

Search the DGRC for LD27564

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:275
Well:64
Vector:pOT2
Associated Gene/TranscriptCG9986-RA
Protein status:LD27564.pep: gold
Preliminary Size:1984
Sequenced Size:2138

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9986 2001-01-01 Release 2 assignment
CG9986 2001-11-29 Blastp of sequenced clone
CG9986 2003-01-01 Sim4 clustering to Release 3
CG9986 2008-04-29 Release 5.5 accounting
CG9986 2008-08-15 Release 5.9 accounting
CG9986 2008-12-18 5.12 accounting

Clone Sequence Records

LD27564.complete Sequence

2138 bp (2138 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069550

> LD27564.complete
TAACTAACTAAAACACCGACTAAGGACCTCTGAAATGGACTCTACTGCCA
CTCGCACGCTGCCCTTTGTGTACAAGTATAAAAATCATAAAGGCCAAGAC
TGCGAATCCCGGCTGGACATCACTTTTCCCTTTGACCAGGAAAATCTGGA
GGAGTGTATCACCCAGCTGATGGCTCCCAACCAGATGGACCCTATGATGC
GGTACCTGGACGAGAATATCAAACTCGAACGGGAGCTGCAGAAATTCGTG
GATACGGAGCAGCAAAATTTCCTGGACGACCAAGCCGAAAAGCTACTCAA
ACAGGCGGCCAACGAGGAGATGGACATCGAGGCCATTGTGCGGGACACAG
AGAGGCTGTACAAGGAGGAACTACTGCAATTTGCCGATCGTGTGGGTCCC
AGCGATGCTGACATATTCGCCCAGAGCTTCCATCGCCTGGTGCACTCTTC
GTCCCTGGAGGACATACTCAAGCGAGAGCGTGCATATGCCAAGGTGGTGT
CCGACATGACCGATCTTATGGACAGCGAGGTGGAGACGTTGAACAACTCT
CAGCAGCAGGAAATGGATAGCCAGATAAATCAGTTGGACATCACCACCAC
CTCGGAGGATATCAACAATCTGCTGGCGCAGCAGTACACCACGCAGAATT
ATGTGCGGAAGCGATACGAATCCGAACTAGAAGCAATGATGGGTCATCAG
AAGAATGAGTATCGAAATTGGATCACCAGTCAGGTCAGTCAGATGTTTCA
AGTGTCGCCGGTGGCCACGCCGCTGGGTAACCGCTCCTCCATGTTCGTCT
CGCAACAGCCCTCCATGGAGGAGAGCTTCACCATTCACCTGGGCTCCCAG
CTGAAGCACATGCACAACATACGCATCCTGAGTGCCAATGTCACGGAGCT
CTGCAGTCCGCTGCACGCCGAGGAGAGTCTTAATGGCCTTAACATGGCTC
TGGGATTGTACTCCAGTTCCCTCTGCGGCGTCGTCGTGCTGACCCCATCG
ATTCAGGCCCAGGCCAACAAGAATATCATTAAAAATGCCAACAAGTCCAC
CGAGTTTCATTTTGAGCAAATAGACGTTCAGATGGAAAAGATCGAGAAGC
AGATTAAGAATTTGACCACTGAAGATTCCAGTGGCAGTAGTACTAGCAAC
AGCAGTGCCGAGGGCAGTGGCACACCCTCGCCGACCAAGAAGAGCGTGCC
CAGACTGAAAACAGGCGACTTCTTCATCACCAAGCACTCGAATCTCTCGC
AAACGCATGTTATTTTTCACCTGATTTCGGACGAACCCATCAACAGTCCC
AGTGAGATCAACTCGCGGCATCCAGTGATCTTGGGTTTGCGAAACATCCT
AAAGACAGCCAGCAGGCACGACATCACCACGCTGACCATTCCGGCTCTGC
TGCGTCACGAGATGAGCGAGGACATGACCGTCCAGTGGTGCATCAGAAGA
GCAGAGCTGGTGTTTAAGTGCGCCAAGGGGTTTATGATAGAATCTGCATC
TTGGGGCGGAGCTGAGTTAAGCACCTTGCAACTGCTACTGCCTGATGACA
TATCGGAAAGTTTGTTCACCACTCTGGCGGGAATGGTTCCCAGCGTTTTT
CACGTGGCCAATCCCAAGATACTTGTGGACACCAGCAAGTAGGCCGCGAA
AACATTCCTCAAACTTCACTTTGCAAATAGACTTTAAATTATTTGTATGA
ATATACAGTTTTATTCAGATTCAGAGTTATATATGTATGTATATGCTTCG
TTATTCGTCGCTTCGCTCAAAAAGTTGTTTAAACTTCAACACACTCAGAA
TTTTCTGTAAATGTTCCTGTATCAATTTTTGTCAATAATTCATCGCAACC
TTTTCAAAACTACAACACTACAATGTATAAGTACATATTCTCATATATAT
AGTTATATTTTAGGCATAGGTATCATGTGTGTATATTACTTCCAAATGTA
AATGTTTATCTTTGGTTTCGAACCCCCATGCATTTCGTGTTGTGTGTGTA
TCTCTGTGGATTGTATTTTAGTCTGTTCGGTTATCTATTACGATTATAAT
AATGATACTTTGAATAACTCTGACCATTAACTTGTAAATATGCTTTTGAA
ATATATATTTATGTATATCTAAAAAAAAAAAAAAAAAA

LD27564.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9986.a 2387 CG9986.a 262..2384 1..2123 10615 100 Plus
CG9986-RA 2387 CG9986-RA 262..2384 1..2123 10615 100 Plus
CG10011-RA 8709 CG10011-RA 8269..8709 2123..1683 2205 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24429474..24430773 222..1521 6365 99.3 Plus
chr3R 27901430 chr3R 24430831..24431431 1520..2120 2990 99.8 Plus
chr3R 27901430 chr3R 24429197..24429417 1..221 1060 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28606411..28607710 222..1521 6500 100 Plus
3R 32079331 3R 28607768..28608371 1520..2123 3020 100 Plus
3R 32079331 3R 28606134..28606354 1..221 1105 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28347242..28348541 222..1521 6500 100 Plus
3R 31820162 3R 28348599..28349202 1520..2123 3020 100 Plus
3R 31820162 3R 28346965..28347185 1..221 1105 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:26:38 has no hits.

LD27564.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:35 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24429197..24429417 1..221 98 -> Plus
chr3R 24429474..24430773 222..1521 99 -> Plus
chr3R 24430833..24431431 1522..2120 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:54 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..1608 35..1642 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:57 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..1608 35..1642 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:51 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..1608 35..1642 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:16 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..1608 35..1642 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:08 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..1608 35..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:04 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..2117 4..2120 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:57 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..2117 4..2120 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:51 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 56..2175 1..2120 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:16 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 1..2117 4..2120 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:08 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
CG9986-RA 56..2175 1..2120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:35 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28606134..28606354 1..221 100 -> Plus
3R 28606411..28607710 222..1521 100 -> Plus
3R 28607770..28608368 1522..2120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:35 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28606134..28606354 1..221 100 -> Plus
3R 28606411..28607710 222..1521 100 -> Plus
3R 28607770..28608368 1522..2120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:35 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28606134..28606354 1..221 100 -> Plus
3R 28606411..28607710 222..1521 100 -> Plus
3R 28607770..28608368 1522..2120 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:51 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24431856..24432076 1..221 100 -> Plus
arm_3R 24432133..24433432 222..1521 100 -> Plus
arm_3R 24433492..24434090 1522..2120 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:41 Download gff for LD27564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28346965..28347185 1..221 100 -> Plus
3R 28347242..28348541 222..1521 100 -> Plus
3R 28348601..28349199 1522..2120 100   Plus

LD27564.pep Sequence

Translation from 34 to 1641

> LD27564.pep
MDSTATRTLPFVYKYKNHKGQDCESRLDITFPFDQENLEECITQLMAPNQ
MDPMMRYLDENIKLERELQKFVDTEQQNFLDDQAEKLLKQAANEEMDIEA
IVRDTERLYKEELLQFADRVGPSDADIFAQSFHRLVHSSSLEDILKRERA
YAKVVSDMTDLMDSEVETLNNSQQQEMDSQINQLDITTTSEDINNLLAQQ
YTTQNYVRKRYESELEAMMGHQKNEYRNWITSQVSQMFQVSPVATPLGNR
SSMFVSQQPSMEESFTIHLGSQLKHMHNIRILSANVTELCSPLHAEESLN
GLNMALGLYSSSLCGVVVLTPSIQAQANKNIIKNANKSTEFHFEQIDVQM
EKIEKQIKNLTTEDSSGSSTSNSSAEGSGTPSPTKKSVPRLKTGDFFITK
HSNLSQTHVIFHLISDEPINSPSEINSRHPVILGLRNILKTASRHDITTL
TIPALLRHEMSEDMTVQWCIRRAELVFKCAKGFMIESASWGGAELSTLQL
LLPDDISESLFTTLAGMVPSVFHVANPKILVDTSK*

LD27564.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18583-PA 542 GF18583-PA 1..542 1..535 2584 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11604-PA 535 GG11604-PA 1..535 1..535 2796 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17126-PA 535 GH17126-PA 3..535 5..535 2386 82.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9986-PA 535 CG9986-PA 1..535 1..535 2725 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10578-PA 538 GI10578-PA 3..538 6..535 2336 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13792-PA 538 GL13792-PA 1..535 1..534 2563 89 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22168-PA 538 GA22168-PA 1..535 1..534 2568 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16386-PA 515 GM16386-PA 1..514 1..534 2433 89 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21375-PA 535 GD21375-PA 1..535 1..535 2835 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22935-PA 537 GJ22935-PA 5..537 7..535 2373 83.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12097-PA 540 GK12097-PA 10..535 5..532 2418 86.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23792-PA 536 GE23792-PA 1..536 1..535 2799 97.2 Plus

LD27564.hyp Sequence

Translation from 34 to 1641

> LD27564.hyp
MDSTATRTLPFVYKYKNHKGQDCESRLDITFPFDQENLEECITQLMAPNQ
MDPMMRYLDENIKLERELQKFVDTEQQNFLDDQAEKLLKQAANEEMDIEA
IVRDTERLYKEELLQFADRVGPSDADIFAQSFHRLVHSSSLEDILKRERA
YAKVVSDMTDLMDSEVETLNNSQQQEMDSQINQLDITTTSEDINNLLAQQ
YTTQNYVRKRYESELEAMMGHQKNEYRNWITSQVSQMFQVSPVATPLGNR
SSMFVSQQPSMEESFTIHLGSQLKHMHNIRILSANVTELCSPLHAEESLN
GLNMALGLYSSSLCGVVVLTPSIQAQANKNIIKNANKSTEFHFEQIDVQM
EKIEKQIKNLTTEDSSGSSTSNSSAEGSGTPSPTKKSVPRLKTGDFFITK
HSNLSQTHVIFHLISDEPINSPSEINSRHPVILGLRNILKTASRHDITTL
TIPALLRHEMSEDMTVQWCIRRAELVFKCAKGFMIESASWGGAELSTLQL
LLPDDISESLFTTLAGMVPSVFHVANPKILVDTSK*

LD27564.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9986-PA 535 CG9986-PA 1..535 1..535 2725 100 Plus