Clone LD27581 Report

Search the DGRC for LD27581

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:275
Well:81
Vector:pOT2
Associated Gene/TranscriptSyx13-RA
Protein status:LD27581.pep: gold
Preliminary Size:1565
Sequenced Size:1476

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11278 2001-01-01 Release 2 assignment
CG11278 2001-11-29 Blastp of sequenced clone
CG11278 2003-01-01 Sim4 clustering to Release 3
Syx13 2008-04-29 Release 5.5 accounting
Syx13 2008-08-15 Release 5.9 accounting
Syx13 2008-12-18 5.12 accounting

Clone Sequence Records

LD27581.complete Sequence

1476 bp (1476 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069551

> LD27581.complete
CTGCTTCTGCTGCAGAGAATTATCATTGTATTTCGTGTGGTGAAAGGCTT
TGTGCGCGAACATTGTGCGTCCCCGGATCAGAACTCGCTTCGAAATATGT
CCAAGGCCTTGAACAATCCCGGTGGCAACGGAGGAGGCGGTGGCCCCCAT
CGGGACTATGGTGCGATGGCCGATTCAACGCCCGAAGTGAGCTTTGCGGC
AGCCGGCGGTTCGTCCGGCTTCAGTCCGACGGAATTCATGTCTCTTAGTG
AGGACATTGGCCACAACATCACTGCCATCCACAGCAGCACCAAGCAGTTG
GAGAAGCAGCTGAAACTGATTGGCACATCCAAGGAGCAGCCAAATCTGCG
GGAGAAGGTGCACACCATCAACACCAAGTGCAATGCCCGGGTGCAGACCA
CCAGTCAGGACTTGCAGAGGCTACAGGCCGTTGTGCGGCACGGAGATCGC
CAGCAGAAGCTGCAGCTGGAGAAGCTCACCCGGGAGTTCCATGGCGTGGT
GGAGAAGTACTCCAATCTGCAGCGACGCATCTCATCGGCCATGCGGCAGA
CCCTGCAGCAGGCGCAGCAATTTGCCGATCAGGTGGTGGAGACCAACGCC
CGTGCTGAGCTGCTGCAGCAACAGCGCTTGGAGCAGGCCCATCTCCAGCA
GGAGCACGACATGCTCGACGATCGGCGGCGGCAGGTCGAGCAAATAGAGT
CGGACATCATCGATGTCAACCAGATCATGACCCAGCTGAGTGGACTGGTG
CACGATCAGGGGCAGCAGATGGATTTCATCGAGAACAGTATTGAGCAGAC
GGCCGCCAACGTTGAGGATGGCACCTCGGAACTGGCCAAGGCGGCCAGGA
GTCGCCAGAGCTACCGGCGCAAGATCTTGATACTCCTGGTGATCGCTGTG
ATAATAGGTTTAATCGTAACTGGCGTTATCGTTGCCAAACTGAACAGTTA
ATTGTTTTATTTTTACGCCCATATTCAACAAACACACGCAAACATACACA
ACCCACACACACACACACGCATAGATTTTTGTAAAACGATTTTTATAAGA
AACAAAATATTCGATCGTTGAGAACTCTGTTTAATCACCAAGTGAGCAAA
GACAACAAGAATGTAGAGGAAAAGCTAAAGCAAAAAATAAAAACAAATAC
CATATTTATAATTATACATATATATCTACATATATATACATAAGTAAATA
AGGATACTGAATCCCACTTAACTTGCATATAAACAATATTCAGCGCTTTT
AAATGTTAATTATTTCTTGTTAAAAACGATTATCGCGAGCAATCTGAGTT
TTGCATTGAAATTTGTAAAATTTTTGTGTTTAGTTTCGAGAAAGCGGAAG
GCGGATTGCTGAAGCCGTCTGCGGCTTTAGTATTCCCTTTTGATATATGT
TACAAGTTATATATAAGTGAGCCAGCAATCGAAAATAAAATAAACCGAAC
AAAAAAAAAAAAAAAAAAAAAAAAAA

LD27581.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-RA 1577 Syx13-RA 97..1549 1..1453 7265 100 Plus
Syx13.b 1628 Syx13.b 265..1623 95..1453 6795 100 Plus
Syx13.a 1411 Syx13.a 48..1406 95..1453 6795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13035221..13035898 95..772 3390 100 Plus
chr3L 24539361 chr3L 13036519..13037197 772..1450 3365 99.7 Plus
chr3L 24539361 chr3L 13034775..13034868 1..94 470 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13046216..13046897 772..1453 3410 100 Plus
3L 28110227 3L 13044918..13045595 95..772 3390 100 Plus
3L 28110227 3L 13044472..13044565 1..94 470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13039316..13039997 772..1453 3410 100 Plus
3L 28103327 3L 13038018..13038695 95..772 3390 100 Plus
3L 28103327 3L 13037572..13037665 1..94 470 100 Plus
Blast to na_te.dros performed 2019-03-16 00:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6898 543..699 134 56.2 Plus

LD27581.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:00:10 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13034775..13034868 1..94 100 -> Plus
chr3L 13035221..13035898 95..772 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:06:55 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 1..855 97..951 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:42 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 1..855 97..951 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:00:30 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 1..855 97..951 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:59 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 1..855 97..951 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:18:33 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 1..855 97..951 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:43 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 37..1486 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:42 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 37..1486 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:00:30 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 39..1488 1..1450 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:00 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 37..1486 1..1450 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:18:33 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
Syx13-RA 39..1488 1..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:10 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13044472..13044565 1..94 100 -> Plus
3L 13044918..13045595 95..772 100 -> Plus
3L 13046217..13046894 773..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:10 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13044472..13044565 1..94 100 -> Plus
3L 13044918..13045595 95..772 100 -> Plus
3L 13046217..13046894 773..1450 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:10 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13044472..13044565 1..94 100 -> Plus
3L 13044918..13045595 95..772 100 -> Plus
3L 13046217..13046894 773..1450 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:00:30 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13037572..13037665 1..94 100 -> Plus
arm_3L 13038018..13038695 95..772 100 -> Plus
arm_3L 13039317..13039994 773..1450 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:23 Download gff for LD27581.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13038018..13038695 95..772 100 -> Plus
3L 13039317..13039994 773..1450 100   Plus
3L 13037572..13037665 1..94 100 -> Plus

LD27581.hyp Sequence

Translation from 0 to 950

> LD27581.hyp
LLLLQRIIIVFRVVKGFVREHCASPDQNSLRNMSKALNNPGGNGGGGGPH
RDYGAMADSTPEVSFAAAGGSSGFSPTEFMSLSEDIGHNITAIHSSTKQL
EKQLKLIGTSKEQPNLREKVHTINTKCNARVQTTSQDLQRLQAVVRHGDR
QQKLQLEKLTREFHGVVEKYSNLQRRISSAMRQTLQQAQQFADQVVETNA
RAELLQQQRLEQAHLQQEHDMLDDRRRQVEQIESDIIDVNQIMTQLSGLV
HDQGQQMDFIENSIEQTAANVEDGTSELAKAARSRQSYRRKILILLVIAV
IIGLIVTGVIVAKLNS*

LD27581.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-PB 284 CG11278-PB 1..284 33..316 1413 100 Plus
Syx13-PA 284 CG11278-PA 1..284 33..316 1413 100 Plus
Syx7-PB 282 CG5081-PB 11..274 67..306 271 25.8 Plus
Syx7-PA 282 CG5081-PA 11..274 67..306 271 25.8 Plus

LD27581.pep Sequence

Translation from 96 to 950

> LD27581.pep
MSKALNNPGGNGGGGGPHRDYGAMADSTPEVSFAAAGGSSGFSPTEFMSL
SEDIGHNITAIHSSTKQLEKQLKLIGTSKEQPNLREKVHTINTKCNARVQ
TTSQDLQRLQAVVRHGDRQQKLQLEKLTREFHGVVEKYSNLQRRISSAMR
QTLQQAQQFADQVVETNARAELLQQQRLEQAHLQQEHDMLDDRRRQVEQI
ESDIIDVNQIMTQLSGLVHDQGQQMDFIENSIEQTAANVEDGTSELAKAA
RSRQSYRRKILILLVIAVIIGLIVTGVIVAKLNS*

LD27581.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24028-PA 281 GF24028-PA 1..281 1..284 1157 79.3 Plus
Dana\GF10875-PA 287 GF10875-PA 20..269 41..266 177 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15624-PA 285 GG15624-PA 1..285 1..284 1429 96.1 Plus
Dere\GG16188-PA 283 GG16188-PA 23..279 46..278 186 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17144-PA 280 GH17144-PA 1..280 1..283 954 68.8 Plus
Dgri\GH16098-PA 285 GH16098-PA 22..281 46..278 200 26.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Syx13-PB 284 CG11278-PB 1..284 1..284 1413 100 Plus
Syx13-PA 284 CG11278-PA 1..284 1..284 1413 100 Plus
Syx7-PB 282 CG5081-PB 11..274 35..274 271 25.8 Plus
Syx7-PA 282 CG5081-PA 11..274 35..274 271 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11753-PA 279 GI11753-PA 1..279 1..283 870 66 Plus
Dmoj\GI11755-PA 272 GI11755-PA 1..270 1..281 492 44.1 Plus
Dmoj\GI12362-PA 297 GI12362-PA 37..295 46..282 196 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25332-PA 281 GL25332-PA 1..281 1..284 1127 82.1 Plus
Dper\GL15057-PA 284 GL15057-PA 20..280 43..278 190 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10884-PA 281 GA10884-PA 1..281 1..284 1127 82.1 Plus
Dpse\GA18647-PA 284 GA18647-PA 20..280 43..278 190 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25395-PA 284 GM25395-PA 1..284 1..284 1464 98.6 Plus
Dsec\GM22370-PA 287 GM22370-PA 17..286 12..281 165 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14427-PA 284 GD14427-PA 1..284 1..284 1464 98.6 Plus
Dsim\GD14962-PA 287 GD14962-PA 17..283 12..278 166 25.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13463-PA 278 GJ13463-PA 1..278 1..283 947 68.3 Plus
Dvir\GJ12254-PA 289 GJ12254-PA 25..285 42..278 194 24.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17426-PA 290 GK17426-PA 23..290 19..284 962 70.3 Plus
Dwil\GK17427-PA 213 GK17427-PA 22..211 38..225 252 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21949-PA 280 GE21949-PA 1..280 1..284 1345 91.9 Plus
Dyak\GE19759-PA 283 GE19759-PA 23..279 46..278 186 26.5 Plus