BDGP Sequence Production Resources |
Search the DGRC for LD27581
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 275 |
Well: | 81 |
Vector: | pOT2 |
Associated Gene/Transcript | Syx13-RA |
Protein status: | LD27581.pep: gold |
Preliminary Size: | 1565 |
Sequenced Size: | 1476 |
Gene | Date | Evidence |
---|---|---|
CG11278 | 2001-01-01 | Release 2 assignment |
CG11278 | 2001-11-29 | Blastp of sequenced clone |
CG11278 | 2003-01-01 | Sim4 clustering to Release 3 |
Syx13 | 2008-04-29 | Release 5.5 accounting |
Syx13 | 2008-08-15 | Release 5.9 accounting |
Syx13 | 2008-12-18 | 5.12 accounting |
1476 bp (1476 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069551
> LD27581.complete CTGCTTCTGCTGCAGAGAATTATCATTGTATTTCGTGTGGTGAAAGGCTT TGTGCGCGAACATTGTGCGTCCCCGGATCAGAACTCGCTTCGAAATATGT CCAAGGCCTTGAACAATCCCGGTGGCAACGGAGGAGGCGGTGGCCCCCAT CGGGACTATGGTGCGATGGCCGATTCAACGCCCGAAGTGAGCTTTGCGGC AGCCGGCGGTTCGTCCGGCTTCAGTCCGACGGAATTCATGTCTCTTAGTG AGGACATTGGCCACAACATCACTGCCATCCACAGCAGCACCAAGCAGTTG GAGAAGCAGCTGAAACTGATTGGCACATCCAAGGAGCAGCCAAATCTGCG GGAGAAGGTGCACACCATCAACACCAAGTGCAATGCCCGGGTGCAGACCA CCAGTCAGGACTTGCAGAGGCTACAGGCCGTTGTGCGGCACGGAGATCGC CAGCAGAAGCTGCAGCTGGAGAAGCTCACCCGGGAGTTCCATGGCGTGGT GGAGAAGTACTCCAATCTGCAGCGACGCATCTCATCGGCCATGCGGCAGA CCCTGCAGCAGGCGCAGCAATTTGCCGATCAGGTGGTGGAGACCAACGCC CGTGCTGAGCTGCTGCAGCAACAGCGCTTGGAGCAGGCCCATCTCCAGCA GGAGCACGACATGCTCGACGATCGGCGGCGGCAGGTCGAGCAAATAGAGT CGGACATCATCGATGTCAACCAGATCATGACCCAGCTGAGTGGACTGGTG CACGATCAGGGGCAGCAGATGGATTTCATCGAGAACAGTATTGAGCAGAC GGCCGCCAACGTTGAGGATGGCACCTCGGAACTGGCCAAGGCGGCCAGGA GTCGCCAGAGCTACCGGCGCAAGATCTTGATACTCCTGGTGATCGCTGTG ATAATAGGTTTAATCGTAACTGGCGTTATCGTTGCCAAACTGAACAGTTA ATTGTTTTATTTTTACGCCCATATTCAACAAACACACGCAAACATACACA ACCCACACACACACACACGCATAGATTTTTGTAAAACGATTTTTATAAGA AACAAAATATTCGATCGTTGAGAACTCTGTTTAATCACCAAGTGAGCAAA GACAACAAGAATGTAGAGGAAAAGCTAAAGCAAAAAATAAAAACAAATAC CATATTTATAATTATACATATATATCTACATATATATACATAAGTAAATA AGGATACTGAATCCCACTTAACTTGCATATAAACAATATTCAGCGCTTTT AAATGTTAATTATTTCTTGTTAAAAACGATTATCGCGAGCAATCTGAGTT TTGCATTGAAATTTGTAAAATTTTTGTGTTTAGTTTCGAGAAAGCGGAAG GCGGATTGCTGAAGCCGTCTGCGGCTTTAGTATTCCCTTTTGATATATGT TACAAGTTATATATAAGTGAGCCAGCAATCGAAAATAAAATAAACCGAAC AAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 13035221..13035898 | 95..772 | 3390 | 100 | Plus |
chr3L | 24539361 | chr3L | 13036519..13037197 | 772..1450 | 3365 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 13034775..13034868 | 1..94 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 13046216..13046897 | 772..1453 | 3410 | 100 | Plus |
3L | 28110227 | 3L | 13044918..13045595 | 95..772 | 3390 | 100 | Plus |
3L | 28110227 | 3L | 13044472..13044565 | 1..94 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 13039316..13039997 | 772..1453 | 3410 | 100 | Plus |
3L | 28103327 | 3L | 13038018..13038695 | 95..772 | 3390 | 100 | Plus |
3L | 28103327 | 3L | 13037572..13037665 | 1..94 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6898 | 543..699 | 134 | 56.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 13034775..13034868 | 1..94 | 100 | -> | Plus |
chr3L | 13035221..13035898 | 95..772 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 1..855 | 97..951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 1..855 | 97..951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 1..855 | 97..951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 1..855 | 97..951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 1..855 | 97..951 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 37..1486 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 37..1486 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 39..1488 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 37..1486 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx13-RA | 39..1488 | 1..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13044472..13044565 | 1..94 | 100 | -> | Plus |
3L | 13044918..13045595 | 95..772 | 100 | -> | Plus |
3L | 13046217..13046894 | 773..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13044472..13044565 | 1..94 | 100 | -> | Plus |
3L | 13044918..13045595 | 95..772 | 100 | -> | Plus |
3L | 13046217..13046894 | 773..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13044472..13044565 | 1..94 | 100 | -> | Plus |
3L | 13044918..13045595 | 95..772 | 100 | -> | Plus |
3L | 13046217..13046894 | 773..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 13037572..13037665 | 1..94 | 100 | -> | Plus |
arm_3L | 13038018..13038695 | 95..772 | 100 | -> | Plus |
arm_3L | 13039317..13039994 | 773..1450 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13038018..13038695 | 95..772 | 100 | -> | Plus |
3L | 13039317..13039994 | 773..1450 | 100 | Plus | |
3L | 13037572..13037665 | 1..94 | 100 | -> | Plus |
Translation from 0 to 950
> LD27581.hyp LLLLQRIIIVFRVVKGFVREHCASPDQNSLRNMSKALNNPGGNGGGGGPH RDYGAMADSTPEVSFAAAGGSSGFSPTEFMSLSEDIGHNITAIHSSTKQL EKQLKLIGTSKEQPNLREKVHTINTKCNARVQTTSQDLQRLQAVVRHGDR QQKLQLEKLTREFHGVVEKYSNLQRRISSAMRQTLQQAQQFADQVVETNA RAELLQQQRLEQAHLQQEHDMLDDRRRQVEQIESDIIDVNQIMTQLSGLV HDQGQQMDFIENSIEQTAANVEDGTSELAKAARSRQSYRRKILILLVIAV IIGLIVTGVIVAKLNS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx13-PB | 284 | CG11278-PB | 1..284 | 33..316 | 1413 | 100 | Plus |
Syx13-PA | 284 | CG11278-PA | 1..284 | 33..316 | 1413 | 100 | Plus |
Syx7-PB | 282 | CG5081-PB | 11..274 | 67..306 | 271 | 25.8 | Plus |
Syx7-PA | 282 | CG5081-PA | 11..274 | 67..306 | 271 | 25.8 | Plus |
Translation from 96 to 950
> LD27581.pep MSKALNNPGGNGGGGGPHRDYGAMADSTPEVSFAAAGGSSGFSPTEFMSL SEDIGHNITAIHSSTKQLEKQLKLIGTSKEQPNLREKVHTINTKCNARVQ TTSQDLQRLQAVVRHGDRQQKLQLEKLTREFHGVVEKYSNLQRRISSAMR QTLQQAQQFADQVVETNARAELLQQQRLEQAHLQQEHDMLDDRRRQVEQI ESDIIDVNQIMTQLSGLVHDQGQQMDFIENSIEQTAANVEDGTSELAKAA RSRQSYRRKILILLVIAVIIGLIVTGVIVAKLNS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24028-PA | 281 | GF24028-PA | 1..281 | 1..284 | 1157 | 79.3 | Plus |
Dana\GF10875-PA | 287 | GF10875-PA | 20..269 | 41..266 | 177 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15624-PA | 285 | GG15624-PA | 1..285 | 1..284 | 1429 | 96.1 | Plus |
Dere\GG16188-PA | 283 | GG16188-PA | 23..279 | 46..278 | 186 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17144-PA | 280 | GH17144-PA | 1..280 | 1..283 | 954 | 68.8 | Plus |
Dgri\GH16098-PA | 285 | GH16098-PA | 22..281 | 46..278 | 200 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx13-PB | 284 | CG11278-PB | 1..284 | 1..284 | 1413 | 100 | Plus |
Syx13-PA | 284 | CG11278-PA | 1..284 | 1..284 | 1413 | 100 | Plus |
Syx7-PB | 282 | CG5081-PB | 11..274 | 35..274 | 271 | 25.8 | Plus |
Syx7-PA | 282 | CG5081-PA | 11..274 | 35..274 | 271 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11753-PA | 279 | GI11753-PA | 1..279 | 1..283 | 870 | 66 | Plus |
Dmoj\GI11755-PA | 272 | GI11755-PA | 1..270 | 1..281 | 492 | 44.1 | Plus |
Dmoj\GI12362-PA | 297 | GI12362-PA | 37..295 | 46..282 | 196 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25332-PA | 281 | GL25332-PA | 1..281 | 1..284 | 1127 | 82.1 | Plus |
Dper\GL15057-PA | 284 | GL15057-PA | 20..280 | 43..278 | 190 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10884-PA | 281 | GA10884-PA | 1..281 | 1..284 | 1127 | 82.1 | Plus |
Dpse\GA18647-PA | 284 | GA18647-PA | 20..280 | 43..278 | 190 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25395-PA | 284 | GM25395-PA | 1..284 | 1..284 | 1464 | 98.6 | Plus |
Dsec\GM22370-PA | 287 | GM22370-PA | 17..286 | 12..281 | 165 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14427-PA | 284 | GD14427-PA | 1..284 | 1..284 | 1464 | 98.6 | Plus |
Dsim\GD14962-PA | 287 | GD14962-PA | 17..283 | 12..278 | 166 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13463-PA | 278 | GJ13463-PA | 1..278 | 1..283 | 947 | 68.3 | Plus |
Dvir\GJ12254-PA | 289 | GJ12254-PA | 25..285 | 42..278 | 194 | 24.6 | Plus |