Clone LD27619 Report

Search the DGRC for LD27619

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:276
Well:19
Vector:pOT2
Associated Gene/TranscriptNaa60-RB
Protein status:LD27619.pep: gold
Sequenced Size:2170

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18177 2002-11-13 Blastp of sequenced clone
CG18177 2008-04-29 Release 5.5 accounting
CG18177 2008-08-15 Release 5.9 accounting
CG18177 2008-12-18 5.12 accounting

Clone Sequence Records

LD27619.complete Sequence

2170 bp assembled on 2006-11-09

GenBank Submission: BT001491

> LD27619.complete
AGGACAAATGAGGCATCATCGCGGGCCAACTGAATTGTGACCAGCGGGCA
GCAGCAGCGGCATGCGACACCGACACCATCAGCGCATCAGCACCACCTGG
CCAGCGTTGTAAGGGATTCTCCCACCCTCCCCAAAGAGCCAACGATTCCA
CTTGAGACCCAAAAGTCCCAGTTTAAAACCAAAATCAAAATCAGCGGAGC
ACCCGCACACCAGCGAGAGCAAGTGGTTTCTACATGATCCGGCGACACGC
TGCCCCCCTCTCCGTGCTGCATGCTCCATGCTCCAGCTCAATGTAAATGT
TAATTAAAGCCAATTGAGCGCACACCCAAAAACACGCACCAAACTGAAAA
CGAATACGAATACGAATCACTCACCCGGAGGAGAAGGCTCCGTTGGACAA
GATTTCGCGCTTAACCTGTACAGGCGACAACGGCGGTGGCGGTGGTGCTG
CAATAAATGGACATAATTGCTCTAATTGGACAGAGCAGCAGCAGACGCAG
TGGCAGTGGCAGTGGGAACGGAGGAGCACCAGCACCAGCACCATCAGCAG
CAGCAGCACCCCCCCTTGCAATAGGATGGCACAATTCACACTCTACAACA
AACACAGTGCGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACAC
GTACCGCTGTGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGA
CGATCTGACGGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACT
ATCCACTATCATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCG
CTGGCAGCTGTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAAT
CAAACCCTATCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACT
CGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCAT
CGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAAT
GAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGC
ACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGA
TTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGG
CAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCT
GGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACC
AGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTG
GTTCTACCACAAGCTGCTCACTCGCTTCAACTTTATCGAGTGAATCTCGA
CGGCGCAGCACAAGCACTGGCCAGGCATATACACGCATCCTTCCTAGACA
CACGAGCACTTTGAGGGCGATGATGAGTGTGTCCGCCGCATTATGTCATC
CCGTCGAGCATAAACAGAAACAGAAACACAAACAAACACAAACATTTATA
TGTACTATGGCACCCAATCACCACCACAGACAGACACACCTTCATTATAA
ATGTTAGGCAACACCTCCGCAGAATCATTACGTTTTTATACGGAAGCTAA
TAGAGAAGATGTGAGACGAGAAGGAGAAGGAGAAGAAGATCTAGCAAAGA
ACAACATCAAAGGCATAAGTTGAAAGTTGTAACATAGTTCGCTAAGTGTA
TTATTACGTTTTAAAAGATATCTATCTGTTCACTACTGCTGTAAATAGTC
TTATGATGTTTTGTTTGAATCGAGCTGTAACCGAGTGATTTGGAATTAGC
ATAGCCCCCTTATCTTTTGAATGTAGCCCGTGTGTATGTTTTTCCTAAGT
TTTAAGTTCCACGCACAAGACAGTCATTTAGTTTAGCGAAGACAAACAAC
AAAGATGCTCATGCTTTAATGCTTAATTTATGAAATCTGCACGTAAATAG
CTTTGAACTGAGAATGGCAAGAATATCTATCCAGTTGAATACCCGAACCA
ACCATTTAAATTCAAATCCCGTTCGCTGTTTCTATAGTATTTTGTAAAAG
TATTTTAATGCATATTGTTTCGCAGCTAAATCTGATTACTTTAGGCACAA
TTTATCTAGCAAATTGTAATATTTTTTAAAATAAAAACTTGTAAAGTTAA
AAAAAAAAAAAAAAAAAAAA

LD27619.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-RB 2222 CG18177-RB 75..2222 1..2148 10740 100 Plus
CG18177-RA 2285 CG18177-RA 1014..2285 877..2148 6360 100 Plus
CG18177-RA 2285 CG18177-RA 75..953 1..879 4395 100 Plus
CG18177.a 1424 CG18177.a 75..788 1..714 3570 100 Plus
CG18177.a 1424 CG18177.a 784..1424 875..1515 3205 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9720567..9721504 1211..2148 4690 100 Plus
chr3L 24539361 chr3L 9718832..9719423 1..592 2915 99.5 Plus
chr3L 24539361 chr3L 9720065..9720287 877..1099 1115 100 Plus
chr3L 24539361 chr3L 9719837..9720004 712..879 840 100 Plus
chr3L 24539361 chr3L 9719641..9719764 593..716 620 100 Plus
chr3L 24539361 chr3L 9720356..9720473 1098..1215 575 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728713..9729651 1211..2149 4695 100 Plus
3L 28110227 3L 9726978..9727569 1..592 2960 100 Plus
3L 28110227 3L 9728211..9728433 877..1099 1115 100 Plus
3L 28110227 3L 9727983..9728150 712..879 840 100 Plus
3L 28110227 3L 9727787..9727909 593..715 615 100 Plus
3L 28110227 3L 9728502..9728619 1098..1215 575 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9721813..9722751 1211..2149 4695 100 Plus
3L 28103327 3L 9720078..9720669 1..592 2960 100 Plus
3L 28103327 3L 9721311..9721533 877..1099 1115 100 Plus
3L 28103327 3L 9721083..9721250 712..879 840 100 Plus
3L 28103327 3L 9720887..9721009 593..715 615 100 Plus
3L 28103327 3L 9721602..9721719 1098..1215 575 99.1 Plus
Blast to na_te.dros performed on 2019-03-16 08:11:42 has no hits.

LD27619.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:12:53 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9718832..9719314 1..483 99 == Plus
chr3L 9719390..9719423 559..592 100 -> Plus
chr3L 9719641..9719761 593..713 100 -> Plus
chr3L 9719839..9720003 714..878 100 -> Plus
chr3L 9720067..9720287 879..1099 100 -> Plus
chr3L 9720358..9720470 1100..1212 99 -> Plus
chr3L 9720569..9721471 1213..2115 96 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:03 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 1..768 576..1343 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:19:24 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 1..768 576..1343 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:53:43 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 1..768 576..1343 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:35:04 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 1..768 576..1343 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:36:31 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 1..768 576..1343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:47:45 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 49..2196 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:19:24 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 75..2222 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:43 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 84..2231 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:35:05 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 49..2196 1..2148 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:36:31 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 84..2231 1..2148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:53 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9726978..9727569 1..592 100 -> Plus
3L 9727787..9727907 593..713 100 -> Plus
3L 9727985..9728149 714..878 100 -> Plus
3L 9728213..9728433 879..1099 100 -> Plus
3L 9728504..9728616 1100..1212 99 -> Plus
3L 9728715..9729650 1213..2148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:53 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9726978..9727569 1..592 100 -> Plus
3L 9727787..9727907 593..713 100 -> Plus
3L 9727985..9728149 714..878 100 -> Plus
3L 9728213..9728433 879..1099 100 -> Plus
3L 9728504..9728616 1100..1212 99 -> Plus
3L 9728715..9729650 1213..2148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:53 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9726978..9727569 1..592 100 -> Plus
3L 9727787..9727907 593..713 100 -> Plus
3L 9727985..9728149 714..878 100 -> Plus
3L 9728213..9728433 879..1099 100 -> Plus
3L 9728504..9728616 1100..1212 99 -> Plus
3L 9728715..9729650 1213..2148 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:43 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720078..9720669 1..592 100 -> Plus
arm_3L 9720887..9721007 593..713 100 -> Plus
arm_3L 9721085..9721249 714..878 100 -> Plus
arm_3L 9721313..9721533 879..1099 100 -> Plus
arm_3L 9721604..9721716 1100..1212 99 -> Plus
arm_3L 9721815..9722750 1213..2148 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:45 Download gff for LD27619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9721085..9721249 714..878 100 -> Plus
3L 9720078..9720669 1..592 100 -> Plus
3L 9720887..9721007 593..713 100 -> Plus
3L 9721313..9721533 879..1099 100 -> Plus
3L 9721604..9721716 1100..1212 99 -> Plus
3L 9721815..9722750 1213..2148 100   Plus

LD27619.pep Sequence

Translation from 575 to 1342

> LD27619.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EDKGILPDSMGRSADVGYILSLGVHRSHRRNGIGSLLLDALMNHLTTAER
HSVKAIFLHTLTTNQPAIFFYEKRRFTLHSFLPYYYNIRGKGKDGFTYVN
YINGGHPPWTLLDHIKHYASMVRHTSSLCAWLAGRVQQVVRWFYHKLLTR
FNFIE*

LD27619.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24673-PA 254 GF24673-PA 1..254 1..255 1336 97.3 Plus
Dana\GF12549-PA 184 GF12549-PA 4..139 32..186 140 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15408-PA 255 GG15408-PA 1..255 1..255 1356 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15428-PA 258 GH15428-PA 1..258 1..255 1254 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PB 255 CG18177-PB 1..255 1..255 1370 100 Plus
Naa60-PA 276 CG18177-PA 1..276 1..255 1338 92.4 Plus
Naa60-PC 239 CG18177-PC 1..218 1..218 1134 97.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13029-PA 258 GI13029-PA 1..258 1..255 1262 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16291-PA 255 GL16291-PA 1..255 1..255 1314 94.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23434-PA 255 GA23434-PA 1..255 1..255 1314 94.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25182-PA 255 GM25182-PA 1..255 1..255 1367 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14213-PA 456 GD14213-PA 1..234 1..234 1252 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12125-PA 258 GJ12125-PA 1..258 1..255 1247 89.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11823-PA 256 GK11823-PA 1..256 1..255 1287 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20874-PA 255 GE20874-PA 1..255 1..255 1363 98.8 Plus

LD27619.hyp Sequence

Translation from 575 to 1342

> LD27619.hyp
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EDKGILPDSMGRSADVGYILSLGVHRSHRRNGIGSLLLDALMNHLTTAER
HSVKAIFLHTLTTNQPAIFFYEKRRFTLHSFLPYYYNIRGKGKDGFTYVN
YINGGHPPWTLLYHIKHYASMVRHTSSLCAWLAGRVQQVVRWFYHKLLTR
FNFIE*

LD27619.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PB 255 CG18177-PB 1..255 1..255 1361 99.6 Plus
Naa60-PA 276 CG18177-PA 1..276 1..255 1329 92 Plus
Naa60-PC 239 CG18177-PC 1..218 1..218 1144 98.2 Plus