Clone LD27659 Report

Search the DGRC for LD27659

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:276
Well:59
Vector:pOT2
Associated Gene/TranscriptTRAM-RA
Protein status:LD27659.pep: gold
Preliminary Size:2141
Sequenced Size:2123

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11642 2001-01-01 Release 2 assignment
CG11642 2001-11-09 Blastp of sequenced clone
CG11642 2003-01-01 Sim4 clustering to Release 3
TRAM 2008-04-29 Release 5.5 accounting
TRAM 2008-08-15 Release 5.9 accounting
TRAM 2008-12-18 5.12 accounting

Clone Sequence Records

LD27659.complete Sequence

2123 bp (2123 high quality bases) assembled on 2001-11-09

GenBank Submission: AY075393

> LD27659.complete
CAGAGAGAGTGCGTGGCACTTTAGCCAGGGCTGGGCAAACCACAAATTGG
AACCAGCGAAAAATACCTTCGAAATTTGCAAGCTGAGTGTGACAAGAATA
AATAGTTCGGCCAACAAATCGGCTTCACAGTGAAAAGTGCAAGCAAACAA
AAAGTGAGAAGTGCGCGATGTGCCATCCCTGGTGTAAACACGCACACACA
CACACACACACGCGCAGGCGGCACACAGGTGAGCACCAGTAGCGCAGTCG
ACAGCAGCAGCGGCGCAGGCAGCGGCAGAGGCAGAGCGCCCAGAGCAGAT
ACTTCAGTTTGCGTCGATTGTGCCGATTGAGATTCAGATTCAGTTCCAGA
TCACAACCCGAATCGGAGCCGCCAGTGTGTGCCAGACGCAACGCAACGGA
ACGGAACGCAAGGCAACGTCTACGTCAGCAAAATCACGCTGCAAGTCACC
AGTTGGCCGGAAGATTGGCGAAAATCCTGTGAGTAAAAATGGCAAGCGTG
CAACAACAGTTTTGCCAGCGTGTCGCTTGGAGTCTCCCAGTGTGCGTGCG
TGTGTGTGAGTGAGTGGGAGCGCGCAGCCGTGTGCGTGCGTGTGTGTGCG
AGCGTCGAAACCCCTGAACCAGAGCAATGGCCATTAAACCGGGACTCGGT
CGCAAGACCAGCAACAAGAACCCGCCTATCCTGAGCCACGAGTTTGTGAT
CCAGAACCACGCGGACATCATCTCCTGCGTAGCCATGGTCTTCGTGGTCG
GCCTGATGAACGAGTCGACGGCGGCGTTCGCCAGCGCGTTCATATCCCTG
CACCACAACGTCAGCGGTGAGGACCCCAGCCGGGAGCAGCCATATGGCAA
GCCATACACCTACATCGCCGGCATCAAGGATTACTGCGCGATATTCTTCT
ACACGCTGACCTGCATAATCATGCACGCGATCATCCAGGAGTTCGTGCTG
GACAAGATCAGCAAAAAACTACACCTGTCCAAGTTCAAGCTGGCCCGCTT
CAACGAGTCCGGCCAACTGGTGGCCTTCTACCTGCTCTCCTTCGTCTGGG
GCGCCCACGTGCTGCTGAAGGAGGGCTACCTCGGACAGGTGGCCCAGCTG
TGGGAGGGCTTCCCCGACCATCCCATGAGCTTTCTGCACAAGTTCTACTT
TGTGGTGCAGCTGGCCTACTACCTACACATGCTGCCGGAGCTCTACTTCC
AGAAGATCAAGACCAAGGAGGAGCAGCAGCCCAAGATCGTGCACTCGATC
AGCGGCTTCACCCTGATCGTCCTGGCCTACACGCTTAGCTTCCAGCGCCT
GGCCCTCGTGCTGCTCACGCTGCACTACTTCAGCGAGCTGCTGTCGCACG
TCTTCCAGCTGATCGGCGTGTTCGACCGCGAGGAGCGACTGGCCAAGCTG
CGGGTGGTGAACAATGCCGTCTTTTTCCTGATCCGCTTCGCTACGTCCGT
GATCGGTGTGCTCACGCTGTACTACGGCATCGGGGGTGTGCGATCCCTGC
TGGCCTTGGGCGGCCTGATCGCCCTGCAGGGCTACCTGGTCTTCTCCTTC
ATCACGGAGCAGCTGCGCGCCAAGCGCGAGGCCAAGAAGGAGGCCAAGCG
GGAGGCCAAGCTGGCGCTGCAGACCAAAAAGCCAGCCAAGACGCCCAAGG
ACAAGGTGAAGCGCAAGAAGGAGAGCGACCTGCCTGAGGCGGACCAGACC
TCGCCCAGTCCCATCAAGCAGAAGCTCAAGTGAGAGCCGTCCCGGCCGAG
CAGAGCAACAAAATCTTCCGCACACTTCCAATTCAAAACGAATGAGAGAT
AGAGAGAGCAGCACCATGGACAGGAGCCCAGGTTGGATTGGTGGACACTT
GCCACTGACCACTGAACACTGGCTACTTGGCTCCCTGTTTGATGTAATCT
CGTTAGCTCAAAACTACCACTGCAACATTTCTGCTGCATTTACTTCCTCG
ACACACAAAAGAACGAACTATTTCTTAGCCTAAATGTTTTGTTTCATTTA
AGTTTACGTCATTTTTAAAACAAATTTTTTTTATTTTTATACATACAAAA
AAAAAAATGAAAAAAGAAACAAATACAACAAAAGAGAAAAGCAAAGCCCA
AAAAAAAAAAAAAAAAAAAAAAA

LD27659.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-RB 2100 TRAM-RB 1..2100 1..2099 10460 99.9 Plus
TRAM-RA 2278 TRAM-RA 575..2068 608..2100 7430 99.9 Plus
TRAM-RC 1896 TRAM-RC 403..1896 607..2099 7430 99.9 Plus
TRAM-RA 2278 TRAM-RA 97..574 1..478 2390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 830315..831808 607..2099 7420 99.9 Plus
chrX 22417052 chrX 829218..829824 1..607 3020 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:19:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 936329..937823 607..2100 7425 99.9 Plus
X 23542271 X 935232..935838 1..607 3035 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 944427..945921 607..2100 7435 99.9 Plus
X 23527363 X 943330..943936 1..607 3035 100 Plus
Blast to na_te.dros performed 2019-03-16 21:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 413..485 1970..2042 131 64.4 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 1302..1410 2069..1960 115 58.6 Minus

LD27659.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:32 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 830315..831715 607..2007 96 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:07 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 627..1733 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:47 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 627..1733 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:01 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 627..1733 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:24 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 627..1733 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:39 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RC 1..1107 627..1733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:39 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RB 1..2100 1..2099 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:47 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RB 1..2100 1..2099 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:01 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RB 1..2100 1..2099 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:24 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RB 1..2100 1..2099 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:39 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
TRAM-RB 1..2100 1..2099 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:32 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
X 935232..935838 1..607 100 -> Plus
X 936330..937822 608..2099 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:32 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
X 935232..935838 1..607 100 -> Plus
X 936330..937822 608..2099 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:32 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
X 935232..935838 1..607 100 -> Plus
X 936330..937822 608..2099 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:01 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 829265..829871 1..607 100 -> Plus
arm_X 830363..831855 608..2099 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:05 Download gff for LD27659.complete
Subject Subject Range Query Range Percent Splice Strand
X 944428..945920 608..2099 99   Plus
X 943330..943936 1..607 100 -> Plus

LD27659.pep Sequence

Translation from 626 to 1732

> LD27659.pep
MAIKPGLGRKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAA
FASAFISLHHNVSGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMH
AIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLLSFVWGAHVLLKEG
YLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQ
QPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFD
REERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRSLLALGGLIAL
QGYLVFSFITEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKES
DLPEADQTSPSPIKQKLK*

LD27659.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22117-PA 389 GF22117-PA 1..366 1..366 1796 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12820-PA 368 GG12820-PA 1..368 1..368 1933 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11983-PA 372 GH11983-PA 1..372 1..368 1665 82.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-PE 368 CG11642-PE 1..368 1..368 1876 100 Plus
TRAM-PD 368 CG11642-PD 1..368 1..368 1876 100 Plus
TRAM-PC 368 CG11642-PC 1..368 1..368 1876 100 Plus
TRAM-PA 368 CG11642-PA 1..368 1..368 1876 100 Plus
TRAM-PB 368 CG11642-PB 1..368 1..368 1876 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15606-PA 371 GI15606-PA 1..371 1..368 1684 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14213-PA 370 GL14213-PA 1..370 1..368 1755 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11116-PA 370 GA11116-PA 1..370 1..368 1750 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19101-PA 367 GM19101-PA 1..367 1..368 1915 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16534-PA 367 GD16534-PA 1..367 1..368 1915 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15210-PA 371 GJ15210-PA 1..371 1..368 1704 85.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24971-PA 380 GK24971-PA 1..380 1..368 1674 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16650-PA 521 GE16650-PA 336..521 183..368 767 94.6 Plus

LD27659.hyp Sequence

Translation from 626 to 1732

> LD27659.hyp
MAIKPGLGRKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAA
FASAFISLHHNVSGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMH
AIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLLSFVWGAHVLLKEG
YLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQ
QPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFD
REERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRSLLALGGLIAL
QGYLVFSFITEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKES
DLPEADQTSPSPIKQKLK*

LD27659.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
TRAM-PE 368 CG11642-PE 1..368 1..368 1876 100 Plus
TRAM-PD 368 CG11642-PD 1..368 1..368 1876 100 Plus
TRAM-PC 368 CG11642-PC 1..368 1..368 1876 100 Plus
TRAM-PA 368 CG11642-PA 1..368 1..368 1876 100 Plus
TRAM-PB 368 CG11642-PB 1..368 1..368 1876 100 Plus