LD27667.complete Sequence
1940 bp (1940 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061344
> LD27667.complete
CACATGAGTTCTAGATCGTTTAGTTTTCTTGGTTTTCATTTGCTCGCCAA
ATTTTAGCAACGTTGCTGGTTTAATCGGCTGCACCTGCAATCGCGGTTAA
TCAGAGAGCGCCGAGCACTAAAGTTCCCATTGCCAAACGAAACGTCCCGA
TTTGCTCGATTTGGAACTGGAACGGACCATGAAAACAAGCAATCTCGGCC
TGTACGCTTTCCGTTTAACCTTCGGTCAGGTGAGCACACGCACATTAAAC
CAGGCAGCCAAACGGCAGAAACAGCATGCGCATTCTGGGGGAAACCTCTG
AGTTTTTCGGCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATG
CAGCGACTGCAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAG
GAATCACAAGCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGA
AGTGCGAGTCCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCT
GATGAAGATCTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATC
TGAACTTTTTGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCT
TAACGTCCAAACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTG
CAGCAATTGACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTC
CAGTTCCATGCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCAC
AACTGGAGCTTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGC
AAGGAACCCCCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGT
CGTCTTACCCGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAA
CTGAGGACACCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACG
TCCCAAAGCTGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGT
GAAGGCAAGTGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCT
TCAGCAGTCCGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTT
GTCCACACAGGCCACGACGCACTGCAGCCATGGCTTCACCACCAGCTCGT
CGTCGCCCAACCGTGTGGTGACCCGCTCTGCCACCATGCTGGCGCTCTTC
GGCATCGCGCTGTCCTCGTTCAGCCTTAAGCAACTGCTGGCCAAGAAGCA
GAAGCACCAGGGCCTGCGCAAGCTCTAGAATGGAGCTATAGCCAGAAAGA
TTAGAGCGATGCCAACGCCAACGGTTGAAGCGGCGATGAGGAGCCAGAGC
GCCATGTCCTGAGGTCACACATTCGATATTTTCATCATCCGCCATCATCG
TGTATATTTGCCTAAGTTAAGTCACCCACTCACCACAGACCCAAGCGGAA
CTCGGACATGGAGGCTTGTTTTGTAATATTCTGTTCGATAAACTAACTGA
TCGGAGGCGAGGATCTGTGCGCATATATAGATATATTTTCTTGTTTACAC
ATGCACACCATGCGTCGCCAACTAAAAGGAATAAATTTGTGATAAATCGT
GTATGAAAAAAGCCCATCGGCAGACAAACTGAACGAAGGAGCGATGGAGG
AGAAGATTCGCTGAGCTTGCGGGAATCCCAAATTTTCCTATACTCTTTTG
TTGCCCGTTTTAGTAATATTTATTTTATGTGTAAACAAGTCTATTATATA
CGTATATTTATTTACAAGTTATTTGCAAACCAGAGAAACGACTAAGTAGG
GAGGTATAAAACAATAATGACTTCGTTGGACTGCAGATCGCCGAGCAGGC
TGTGTCAGTATCCAAGAAACAAACTAGTTCTAGTTCCGTATTCAAATAAA
TGCATTATATTCAATTCGAAAAAAAAAAAAAAAAAAAAAA
LD27667.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 2066 | CG8229-RE | 80..2001 | 1..1922 | 9610 | 100 | Plus |
CG8229-RD | 1537 | CG8229-RD | 80..1169 | 1..1090 | 5450 | 100 | Plus |
CG33199-RA | 789 | CG33199-RA | 279..789 | 1088..1598 | 2555 | 100 | Plus |
CG33199-RA | 789 | CG33199-RA | 52..281 | 1..230 | 1150 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 4837419..4838368 | 1090..144 | 4580 | 99.1 | Minus |
chr2R | 21145070 | chr2R | 4835687..4836517 | 1918..1088 | 4155 | 100 | Minus |
chr2R | 21145070 | chr2R | 4838486..4838630 | 145..1 | 725 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949845..8950791 | 1090..144 | 4735 | 100 | Minus |
2R | 25286936 | 2R | 8948109..8948943 | 1922..1088 | 4175 | 100 | Minus |
2R | 25286936 | 2R | 8950909..8951053 | 145..1 | 725 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 8951044..8951990 | 1090..144 | 4735 | 100 | Minus |
2R | 25260384 | 2R | 8949308..8950142 | 1922..1088 | 4175 | 100 | Minus |
2R | 25260384 | 2R | 8952108..8952252 | 145..1 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 19:29:30 has no hits.
LD27667.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:30:41 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 4835687..4836515 | 1090..1918 | 100 | <- | Minus |
chr2R | 4837420..4838368 | 144..1089 | 99 | <- | Minus |
chr2R | 4838488..4838630 | 1..143 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:09 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 1..882 | 348..1229 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:32 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 1..882 | 348..1229 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:57:55 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 1..882 | 348..1229 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:25 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 1..882 | 348..1229 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:24 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 1..882 | 348..1229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:51 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 52..1969 | 1..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:31 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 52..1969 | 1..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:55 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 34..1951 | 1..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:26 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 52..1969 | 1..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:24 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 34..1951 | 1..1918 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:41 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8950911..8951053 | 1..143 | 100 | | Minus |
2R | 8948113..8948941 | 1090..1918 | 100 | <- | Minus |
2R | 8949846..8950791 | 144..1089 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:41 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8950911..8951053 | 1..143 | 100 | | Minus |
2R | 8948113..8948941 | 1090..1918 | 100 | <- | Minus |
2R | 8949846..8950791 | 144..1089 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:41 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8950911..8951053 | 1..143 | 100 | | Minus |
2R | 8948113..8948941 | 1090..1918 | 100 | <- | Minus |
2R | 8949846..8950791 | 144..1089 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:55 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4835618..4836446 | 1090..1918 | 100 | <- | Minus |
arm_2R | 4837351..4838296 | 144..1089 | 100 | <- | Minus |
arm_2R | 4838416..4838558 | 1..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:17 Download gff for
LD27667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8949312..8950140 | 1090..1918 | 100 | <- | Minus |
2R | 8951045..8951990 | 144..1089 | 100 | <- | Minus |
2R | 8952110..8952252 | 1..143 | 100 | | Minus |
LD27667.pep Sequence
Translation from 275 to 1228
> LD27667.pep
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQP*
LD27667.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PE | 293 | CG8229-PE | 1..293 | 25..317 | 1551 | 100 | Plus |
CG8229-PD | 335 | CG8229-PD | 1..248 | 25..272 | 1295 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11090-PA | 296 | GL11090-PA | 2..204 | 23..271 | 295 | 33.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA24608-PA | 296 | GA24608-PA | 2..204 | 23..271 | 295 | 33.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22689-PA | 206 | GE22689-PA | 1..145 | 1..140 | 476 | 68.5 | Plus |
LD27667.hyp Sequence
Translation from 275 to 1228
> LD27667.hyp
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQP*
LD27667.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PE | 293 | CG8229-PE | 1..293 | 25..317 | 1551 | 100 | Plus |
CG8229-PD | 335 | CG8229-PD | 1..248 | 25..272 | 1295 | 100 | Plus |