Clone LD27667 Report

Search the DGRC for LD27667

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:276
Well:67
Vector:pOT2
Associated Gene/TranscriptCG8229-RE
Protein status:LD27667.pep: gold
Preliminary Size:1874
Sequenced Size:1940

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8229 2001-01-01 Release 2 assignment
CG8229 2001-10-10 Blastp of sequenced clone
CG8229 2008-04-29 Release 5.5 accounting
CG8229 2008-08-15 Release 5.9 accounting
CG33199 2008-08-15 Release 5.9 accounting
CG33199 2008-12-18 5.12 accounting
CG8229 2008-12-18 5.12 accounting

Clone Sequence Records

LD27667.complete Sequence

1940 bp (1940 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061344

> LD27667.complete
CACATGAGTTCTAGATCGTTTAGTTTTCTTGGTTTTCATTTGCTCGCCAA
ATTTTAGCAACGTTGCTGGTTTAATCGGCTGCACCTGCAATCGCGGTTAA
TCAGAGAGCGCCGAGCACTAAAGTTCCCATTGCCAAACGAAACGTCCCGA
TTTGCTCGATTTGGAACTGGAACGGACCATGAAAACAAGCAATCTCGGCC
TGTACGCTTTCCGTTTAACCTTCGGTCAGGTGAGCACACGCACATTAAAC
CAGGCAGCCAAACGGCAGAAACAGCATGCGCATTCTGGGGGAAACCTCTG
AGTTTTTCGGCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATG
CAGCGACTGCAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAG
GAATCACAAGCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGA
AGTGCGAGTCCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCT
GATGAAGATCTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATC
TGAACTTTTTGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCT
TAACGTCCAAACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTG
CAGCAATTGACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTC
CAGTTCCATGCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCAC
AACTGGAGCTTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGC
AAGGAACCCCCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGT
CGTCTTACCCGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAA
CTGAGGACACCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACG
TCCCAAAGCTGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGT
GAAGGCAAGTGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCT
TCAGCAGTCCGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTT
GTCCACACAGGCCACGACGCACTGCAGCCATGGCTTCACCACCAGCTCGT
CGTCGCCCAACCGTGTGGTGACCCGCTCTGCCACCATGCTGGCGCTCTTC
GGCATCGCGCTGTCCTCGTTCAGCCTTAAGCAACTGCTGGCCAAGAAGCA
GAAGCACCAGGGCCTGCGCAAGCTCTAGAATGGAGCTATAGCCAGAAAGA
TTAGAGCGATGCCAACGCCAACGGTTGAAGCGGCGATGAGGAGCCAGAGC
GCCATGTCCTGAGGTCACACATTCGATATTTTCATCATCCGCCATCATCG
TGTATATTTGCCTAAGTTAAGTCACCCACTCACCACAGACCCAAGCGGAA
CTCGGACATGGAGGCTTGTTTTGTAATATTCTGTTCGATAAACTAACTGA
TCGGAGGCGAGGATCTGTGCGCATATATAGATATATTTTCTTGTTTACAC
ATGCACACCATGCGTCGCCAACTAAAAGGAATAAATTTGTGATAAATCGT
GTATGAAAAAAGCCCATCGGCAGACAAACTGAACGAAGGAGCGATGGAGG
AGAAGATTCGCTGAGCTTGCGGGAATCCCAAATTTTCCTATACTCTTTTG
TTGCCCGTTTTAGTAATATTTATTTTATGTGTAAACAAGTCTATTATATA
CGTATATTTATTTACAAGTTATTTGCAAACCAGAGAAACGACTAAGTAGG
GAGGTATAAAACAATAATGACTTCGTTGGACTGCAGATCGCCGAGCAGGC
TGTGTCAGTATCCAAGAAACAAACTAGTTCTAGTTCCGTATTCAAATAAA
TGCATTATATTCAATTCGAAAAAAAAAAAAAAAAAAAAAA

LD27667.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-RE 2066 CG8229-RE 80..2001 1..1922 9610 100 Plus
CG8229-RD 1537 CG8229-RD 80..1169 1..1090 5450 100 Plus
CG33199-RA 789 CG33199-RA 279..789 1088..1598 2555 100 Plus
CG33199-RA 789 CG33199-RA 52..281 1..230 1150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4837419..4838368 1090..144 4580 99.1 Minus
chr2R 21145070 chr2R 4835687..4836517 1918..1088 4155 100 Minus
chr2R 21145070 chr2R 4838486..4838630 145..1 725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8949845..8950791 1090..144 4735 100 Minus
2R 25286936 2R 8948109..8948943 1922..1088 4175 100 Minus
2R 25286936 2R 8950909..8951053 145..1 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8951044..8951990 1090..144 4735 100 Minus
2R 25260384 2R 8949308..8950142 1922..1088 4175 100 Minus
2R 25260384 2R 8952108..8952252 145..1 725 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:29:30 has no hits.

LD27667.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:30:41 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4835687..4836515 1090..1918 100 <- Minus
chr2R 4837420..4838368 144..1089 99 <- Minus
chr2R 4838488..4838630 1..143 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:09 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 1..882 348..1229 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:32 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 1..882 348..1229 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:57:55 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 1..882 348..1229 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:25 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 1..882 348..1229 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:24 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 1..882 348..1229 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:51 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 52..1969 1..1918 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:31 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 52..1969 1..1918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:55 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 34..1951 1..1918 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:26 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 52..1969 1..1918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:24 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 34..1951 1..1918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:41 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8950911..8951053 1..143 100   Minus
2R 8948113..8948941 1090..1918 100 <- Minus
2R 8949846..8950791 144..1089 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:41 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8950911..8951053 1..143 100   Minus
2R 8948113..8948941 1090..1918 100 <- Minus
2R 8949846..8950791 144..1089 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:41 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8950911..8951053 1..143 100   Minus
2R 8948113..8948941 1090..1918 100 <- Minus
2R 8949846..8950791 144..1089 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:55 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4835618..4836446 1090..1918 100 <- Minus
arm_2R 4837351..4838296 144..1089 100 <- Minus
arm_2R 4838416..4838558 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:17 Download gff for LD27667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8949312..8950140 1090..1918 100 <- Minus
2R 8951045..8951990 144..1089 100 <- Minus
2R 8952110..8952252 1..143 100   Minus

LD27667.pep Sequence

Translation from 275 to 1228

> LD27667.pep
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQP*

LD27667.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-PE 293 CG8229-PE 1..293 25..317 1551 100 Plus
CG8229-PD 335 CG8229-PD 1..248 25..272 1295 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11090-PA 296 GL11090-PA 2..204 23..271 295 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24608-PA 296 GA24608-PA 2..204 23..271 295 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22689-PA 206 GE22689-PA 1..145 1..140 476 68.5 Plus

LD27667.hyp Sequence

Translation from 275 to 1228

> LD27667.hyp
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQP*

LD27667.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-PE 293 CG8229-PE 1..293 25..317 1551 100 Plus
CG8229-PD 335 CG8229-PD 1..248 25..272 1295 100 Plus