Clone LD27763 Report

Search the DGRC for LD27763

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:277
Well:63
Vector:pOT2
Associated Gene/Transcriptbarc-RA
Protein status:LD27763.pep: gold
Preliminary Size:2317
Sequenced Size:2247

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6049 2001-01-01 Release 2 assignment
CG6049 2001-10-10 Blastp of sequenced clone
CG6049 2003-01-01 Sim4 clustering to Release 3
CG6049 2008-04-29 Release 5.5 accounting
CG6049 2008-08-15 Release 5.9 accounting
CG6049 2008-12-18 5.12 accounting

Clone Sequence Records

LD27763.complete Sequence

2247 bp (2247 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061345

> LD27763.complete
ATTTCGTTTGCATTATTTTTTATTAAATTGTACTTAAAGACCAAATGCAA
TTGCTCAGAAAAGTGCAGGTGCAAGTTTTATAAAATCGTGCAGACCCGCG
AAGCCTGCGACTGATCACCATGTGCCTGCCCATTGGTTAAACTCAGCTCG
CTGTTAACTTTGTTTGTGTTTTTGTTGTGACTTCCAGCCGGCGGACGCAG
TTCATCTATTTGGAAGGTAAGCAGAATTTAGAACGCAAAATGAGCGACGA
AGGTGGCTGTAAATCGGAGCAGTTAGAGAAATCCGAAGAAGCGGAGGAAA
AAAAGGGGGACGCAGAAGGACAGGAAGCGAAAGCTCCAATTCTCAACCCC
ATTTCAGTCCCAGAAGTTGATGACAAGCCGACGGAAAATAAACCCCAATC
GGATAATCACGCGGACAAAACGGACGAAACTCCATCTCAGGACTTTGCCG
CCTACGAGGAGCACATGACCTATGGAGCGGACGGCGGGGCTATATACACG
GATCCCAGCACGAAGCAGAAATACAAGTGGTGCGCCACCGGAAACAATTG
GCAACCCTTAGGCGTTGATGAAGATGTTGATGGACAGGCTGAAGATCCCT
ACGAAAACGAGCACTACAAGTGGTGTCCCAAATCCCAACAGTGGTTGCCA
AAAAAACAGGAAACTGAAACGGAGCACTACAAGTGGGATGACGAGCAAAA
GAAGTGGGTGCCCAAGCACCCGAACCCTGGCCAGGAAGGGGTTTGCGGTG
TGGATGAGCATGGCGAGCGCACTTACACCGACAAGGATGGCGTCGAGTTC
TTTTGGGATGCAACCAAGAGTGCTTGGTTCCCCAAGATCGATGATGATTT
CATGGCTCGCTACCAAATGAACTATGGATTTATTGACAACACATCAGCGG
GGGAGAAAGAGAAGGCTGAAAAGGAGGCGGCTGAGGCCAAGAGAAAGGAG
GAGGAACTCAAGCGTATGACGGCAGAGGCGGAAGCTGCTATGTCTAGAGA
CAATCCAGCATCCAGCGCTGCAGTGCCCACTGGCAAGCGAAAGGCCCAGG
AGCCCCCAAAATGGTTCGAAATGGATCCATTGCAGAACACCAAGGTGTAT
GTCTCCAATTTGCCCCTGGACATTACTATGGATGAGTTTGCCGATCTGAT
GGGCAAGTGTGGCATGGTAATGAGAGATCCGCAGACGCAGAAATTCAAGC
TGAAACTATATGCCGAAAAGGATGGACAAATCAAGGGCGATGGCTTGTGT
GATTACATCAAGGTGGAGAGTGTCAATCTGGCGCTGAAAATTTTAGACGA
GTACAATCTGCGTGGCCACAAGATTCGTGTCCAGAGGGCTCAGTTCCAAA
TGCGTGGAGAATACAATCCCGCTCTGAAGCCCAAACGCAAGAAGAAGGAC
AAAGAGAAATTGCAAAAGATGAAGGAAAAGTTATTTGATTGGCGTCCAGA
TAAATTGCGTGGCGAACGGTCAAAGAATGAGAAAACCGTCATCATTAAAA
ACCTCTTCACCCCAGAACTCTTTGAGAAGGAAGTGGAGCTCATATTGGAG
TACCAAAACAATCTGCGTGAGGAGTGCAGCAAATGCGGGATGGTCCGTAA
AGTGGTTATCTATGATCGCCATCCTGATGGTGTAGCCCAGATCAACATGG
CCTCGCCGGAGGAAGCTGACCTCGTCATTCAAATGATGCAGGGGCGTTAT
TTTGGACAGCGGCAACTAAGTGCGGAGGCCTGGGATGGCAAGACCAAATA
CAAAATTGAGGAATCAGCTGTCGAGGCGCATGAACGGCTTTCCAAATGGG
ATGAATTCTTGGCAGAAGAAGAAACCGATAAAAAAGCTTCCGAGGATATG
AAGGAGGAGGACGTTGACTCGCCCGAAAACCAGCTTTTGCCAGGAGACGC
CACCCCTTAGTTTTCATTTACCTGCGATCGTTTTCACGCGGTTCAAGAAT
CTCCAGGACCACCTCGTTGGCCTGCTCGTTCGGATAGGTGGCGTTCCAGC
GGTTGTAGATCTTGTAGCGATTGGGGCCGCTCACCTTTGGCATCTTGTGC
TGACATATGAAGCGCAGCTTATCCGAGCAGGGCCGCGCCGACCAGCGGTA
CTTGAGGCTTGGATCGTAGATGGCACAGTTATTATCAAGCGGTTGGCTGT
TGGAGATAAGTTGCACATAGCTAGAATTGTTGCTTAAGCGTTAAATCAAT
CTACGGAAATAAAGAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAA

LD27763.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6049-RA 2325 CG6049-RA 98..2323 1..2226 11130 100 Plus
CG6049-RB 2329 CG6049-RB 98..2327 1..2226 11065 99.8 Plus
CG6049-RC 2310 CG6049-RC 312..2308 230..2226 9985 100 Plus
CG6049-RC 2310 CG6049-RC 98..313 1..216 1080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21413678..21414507 1059..230 4150 100 Minus
chr3L 24539361 chr3L 21409348..21409817 2223..1754 2350 100 Minus
chr3L 24539361 chr3L 21421800..21422030 231..1 1155 100 Minus
chr3L 24539361 chr3L 21413412..21413616 1264..1060 1025 100 Minus
chr3L 24539361 chr3L 21410066..21410252 1616..1430 935 100 Minus
chr3L 24539361 chr3L 21410319..21410489 1431..1261 855 100 Minus
chr3L 24539361 chr3L 21409878..21410014 1753..1617 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21424718..21425547 1059..230 4150 100 Minus
3L 28110227 3L 21420385..21420857 2226..1754 2365 100 Minus
3L 28110227 3L 21432840..21433070 231..1 1155 100 Minus
3L 28110227 3L 21424452..21424656 1264..1060 1025 100 Minus
3L 28110227 3L 21421106..21421292 1616..1430 935 100 Minus
3L 28110227 3L 21421359..21421529 1431..1261 855 100 Minus
3L 28110227 3L 21420918..21421054 1753..1617 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21417818..21418647 1059..230 4150 100 Minus
3L 28103327 3L 21413485..21413957 2226..1754 2365 100 Minus
3L 28103327 3L 21425940..21426170 231..1 1155 100 Minus
3L 28103327 3L 21417552..21417756 1264..1060 1025 100 Minus
3L 28103327 3L 21414206..21414392 1616..1430 935 100 Minus
3L 28103327 3L 21414459..21414629 1431..1261 855 100 Minus
3L 28103327 3L 21414018..21414154 1753..1617 685 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:52:37 has no hits.

LD27763.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:53:38 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21410066..21410252 1430..1616 100 <- Minus
chr3L 21410321..21410487 1263..1429 100 <- Minus
chr3L 21413414..21413616 1060..1262 100 <- Minus
chr3L 21409348..21409817 1754..2223 100 <- Minus
chr3L 21409878..21410014 1617..1753 100 <- Minus
chr3L 21413678..21414505 232..1059 100 <- Minus
chr3L 21421800..21422030 1..231 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:27:05 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
CG6049-RA 1..1671 240..1910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:36 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
CG6049-RA 1..1671 240..1910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:13:46 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
barc-RC 1..1671 240..1910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:21 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
CG6049-RA 1..1671 240..1910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:22 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
barc-RC 1..1671 240..1910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:27:01 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
CG6049-RA 98..2320 1..2223 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:36 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
CG6049-RA 98..2320 1..2223 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:13:46 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
barc-RA 65..2287 1..2223 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:21 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
CG6049-RA 98..2320 1..2223 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:22 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
barc-RA 65..2287 1..2223 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:38 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21420388..21420857 1754..2223 100 <- Minus
3L 21420918..21421054 1617..1753 100 <- Minus
3L 21421106..21421292 1430..1616 100 <- Minus
3L 21421361..21421527 1263..1429 100 <- Minus
3L 21424454..21424656 1060..1262 100 <- Minus
3L 21424718..21425545 232..1059 100 <- Minus
3L 21432840..21433070 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:38 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21420388..21420857 1754..2223 100 <- Minus
3L 21420918..21421054 1617..1753 100 <- Minus
3L 21421106..21421292 1430..1616 100 <- Minus
3L 21421361..21421527 1263..1429 100 <- Minus
3L 21424454..21424656 1060..1262 100 <- Minus
3L 21424718..21425545 232..1059 100 <- Minus
3L 21432840..21433070 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:53:38 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21420388..21420857 1754..2223 100 <- Minus
3L 21420918..21421054 1617..1753 100 <- Minus
3L 21421106..21421292 1430..1616 100 <- Minus
3L 21421361..21421527 1263..1429 100 <- Minus
3L 21424454..21424656 1060..1262 100 <- Minus
3L 21424718..21425545 232..1059 100 <- Minus
3L 21432840..21433070 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:13:46 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21413488..21413957 1754..2223 100 <- Minus
arm_3L 21414018..21414154 1617..1753 100 <- Minus
arm_3L 21414206..21414392 1430..1616 100 <- Minus
arm_3L 21414461..21414627 1263..1429 100 <- Minus
arm_3L 21417554..21417756 1060..1262 100 <- Minus
arm_3L 21417818..21418645 232..1059 100 <- Minus
arm_3L 21425940..21426170 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:37 Download gff for LD27763.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21414461..21414627 1263..1429 100 <- Minus
3L 21417554..21417756 1060..1262 100 <- Minus
3L 21413488..21413957 1754..2223 100 <- Minus
3L 21414018..21414154 1617..1753 100 <- Minus
3L 21414206..21414392 1430..1616 100 <- Minus
3L 21417818..21418645 232..1059 100 <- Minus
3L 21425940..21426170 1..231 100   Minus

LD27763.pep Sequence

Translation from 239 to 1909

> LD27763.pep
MSDEGGCKSEQLEKSEEAEEKKGDAEGQEAKAPILNPISVPEVDDKPTEN
KPQSDNHADKTDETPSQDFAAYEEHMTYGADGGAIYTDPSTKQKYKWCAT
GNNWQPLGVDEDVDGQAEDPYENEHYKWCPKSQQWLPKKQETETEHYKWD
DEQKKWVPKHPNPGQEGVCGVDEHGERTYTDKDGVEFFWDATKSAWFPKI
DDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAA
MSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEF
ADLMGKCGMVMRDPQTQKFKLKLYAEKDGQIKGDGLCDYIKVESVNLALK
ILDEYNLRGHKIRVQRAQFQMRGEYNPALKPKRKKKDKEKLQKMKEKLFD
WRPDKLRGERSKNEKTVIIKNLFTPELFEKEVELILEYQNNLREECSKCG
MVRKVVIYDRHPDGVAQINMASPEEADLVIQMMQGRYFGQRQLSAEAWDG
KTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDMKEEDVDSPENQLL
PGDATP*

LD27763.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24193-PA 555 GF24193-PA 8..555 17..556 1985 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13238-PA 554 GG13238-PA 1..554 1..556 2467 89.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14692-PA 569 GH14692-PA 53..560 42..540 1920 76 Plus
Dgri\GH11790-PA 179 GH11790-PA 1..166 371..536 674 83.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
barc-PA 556 CG6049-PA 1..556 1..556 2989 100 Plus
barc-PC 556 CG6049-PC 1..556 1..556 2989 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13305-PA 265 GI13305-PA 1..224 301..524 1030 90.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24582-PA 232 GL24582-PA 27..221 342..536 836 87.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19321-PA 601 GA19321-PA 96..590 39..536 1870 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22141-PA 649 GM22141-PA 433..649 340..556 986 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12119-PA 605 GD12119-PA 440..605 340..505 865 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12075-PA 541 GJ12075-PA 3..523 9..531 1894 73.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20417-PA 402 GK20417-PA 114..393 63..341 1076 74.1 Plus
Dwil\GK20418-PA 173 GK20418-PA 1..158 371..528 689 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22336-PA 554 GE22336-PA 1..554 1..556 2467 91 Plus

LD27763.hyp Sequence

Translation from 239 to 1909

> LD27763.hyp
MSDEGGCKSEQLEKSEEAEEKKGDAEGQEAKAPILNPISVPEVDDKPTEN
KPQSDNHADKTDETPSQDFAAYEEHMTYGADGGAIYTDPSTKQKYKWCAT
GNNWQPLGVDEDVDGQAEDPYENEHYKWCPKSQQWLPKKQETETEHYKWD
DEQKKWVPKHPNPGQEGVCGVDEHGERTYTDKDGVEFFWDATKSAWFPKI
DDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAA
MSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEF
ADLMGKCGMVMRDPQTQKFKLKLYAEKDGQIKGDGLCDYIKVESVNLALK
ILDEYNLRGHKIRVQRAQFQMRGEYNPALKPKRKKKDKEKLQKMKEKLFD
WRPDKLRGERSKNEKTVIIKNLFTPELFEKEVELILEYQNNLREECSKCG
MVRKVVIYDRHPDGVAQINMASPEEADLVIQMMQGRYFGQRQLSAEAWDG
KTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDMKEEDVDSPENQLL
PGDATP*

LD27763.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
barc-PA 556 CG6049-PA 1..556 1..556 2989 100 Plus
barc-PC 556 CG6049-PC 1..556 1..556 2989 100 Plus