Clone LD27791 Report

Search the DGRC for LD27791

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:277
Well:91
Vector:pOT2
Associated Gene/Transcriptmol-RA
Protein status:LD27791.pep: gold
Preliminary Size:2213
Sequenced Size:2207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4482 2001-01-01 Release 2 assignment
CG15268 2001-01-01 Release 2 assignment
CG4482 2001-10-10 Blastp of sequenced clone
CG4482 2003-01-01 Sim4 clustering to Release 3
mol 2008-04-29 Release 5.5 accounting
mol 2008-08-15 Release 5.9 accounting
mol 2008-12-18 5.12 accounting

Clone Sequence Records

LD27791.complete Sequence

2207 bp (2207 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061346

> LD27791.complete
TCGAAACGGACGCAGATTTTTATACGTCTTAACGGCTAACTCGAAGCTAT
AAATTGGACATCAAAATTGGATTATACAAAAATAAAAAAAAATAACAAAG
TGAACACGAAAAGTTAATAACAATTATTTTGTATGCCGGTTTCTTCTTGA
CAAGTTTGATCCCAAAACCCCGACATCAGCAACAGCAACCAGCATGAAAG
GCTGGTTCGACGCGTTTCGAGACGATGGGGGACCAACGCTATATTCCTTC
TCAAATCGAACACCCGTAACCGGAGATGTCTCAATCGTAGCCGTCTCAGT
GCTATTTGCCACATTCTATGTAGCATTTTTAGTCATCTTTCCGGGTGTCA
GAAAACAGAAATTCACAACGTTTTCGACAGTCACATTGAGCCTTTTTGTG
GGTCTAGTCATATTAATCACTCGCCTGGGATCCGCGTGGCATGTGGCACA
TGCAACTATCATCGCGCCATACAAAGCCTTCTCACGCGAGAAGCTCCCAG
CGCGCATCGGCACCCACATTGGCCTCATGCATGTCAATGTGACGCTGACG
GCGATTCCCATTGGAAACTGGACACCGCCGGATATAGACTACAACGAACG
CTTCACCTGGGAGGGAGCCAATGACATGAGTGCCAACTATCGTCACGCCC
TCCAGCGGGGTCTCCCCTTTCCCATCCTGACCGTTGCCGAATACTTTAGC
CTGGGCCGTGAGGGATTCTCGTGGGGTGGACAGTACCGGGCTGCGGGATA
TTTCGCGAGCATAATGCTCTGGGCCTCGCTGGCCTCGTGGCTGCTGATGA
ACCTGCTGCTGATAGCGGTACCCCGATATGGGGCCTATATGAAGGCTTTG
ACAGGTGCCTTGCTGGTCTGCACCACGGTGGGCTATCATTGCCTGCTCCC
GAAGAGGCCTTTGTCCATTCACCTCGAAGGCGGACGCCTGGAGTTTCATT
TCGGATGGTGCTACTGGCTGGTCTTGGTGGCAGGCATTCTCTGCTTTATT
GCGGGAGTTCTGATCTCCATTATTGACTTGGTTTGGCCGCACACCTTCTC
CACTGTGCTGGAGGTATACTACGGCACGCCATACGATCGCCATGTGATTC
TGGAGGAGTCCAGTGATGTGCGTTATCGAAAGCCGCGCAACAGTCGCAGC
TTAGAGGATCCACCTGGACTGGGCTCCCGCATCCTGCGCCGCCTCAGCTC
CAAGGCACGTGACTTGCAACCTGGCACGGCACCGCGTCGCGATAGTCCAG
CCGGAGTGTCCAGCAGCGGTGGAGTTGAAAACAAGGGCTTCCAGTCGGAT
GCACCAAAGAGTCCTTGGAGATATCCCTTCCGAAGGTCGCAGCAAATGGC
GCAGCAGCAGCATTCGCATCCACTGCATCAGCATCCGTTGCAGCAGCATC
ATCAGCACCACCAGCACCACCATCAGCAGCAGCTGCAGTTTGTGGGCGGT
CCGGTGGTGCAGCATCCCATGCATCATATGCAGCGCACCATGTCGCAGGA
TTCAGGATCCAGCATTGCCTCGGCAGCCGTGCAAATCTCCCCGCTGCACA
AGCATGCTTTGGCGCGGATGTTGCCTAATCCCCCAGTGGAGCGTATTCGT
GACATGGATCACTGGTGATTGCCATTGGACAAACCATAAAAATCGACTAT
TTTTATTGGGCTTACATAACTCTTGACTAATTGGAAATAATTTTAGAGGA
AATCTTAAAACAAAACATTTTGTGATAATTTCTTAATTTAAACAAAACAA
ATCAACACAAATTAGGATGAAAAATATTTTATAATTGACCAGATCACATA
CTTTAACTTTGATAATATAACATAAAAAACGAAAACGATGTTATTCTTAA
CTGTACTTTTAATTAAATTATTTTAAATGTTAAGCTAACCATGTAATAAC
AATCGACGAATCAATTTTAGATATAAGAATGTTTTTTAGTGATGTTTATT
TGTGATAAGACAATCCTGCCACACACGCACAGAGAAATCGACACATACAG
GAGCGAGAATTATGGCAAAAAATCAATGTTTATTTCTAAAGTAATTTATT
ATTTGTAATTTGAATTCAATGCCAGTGTCTATAACGAATAAGTTGACAAC
AATATGTGTAAAATCCGTTTAAGTTTAATGTATAAGCTGACCATGTTTAA
AAACGATAAGATTGGAAAAAAACACAATGACGTAAATAAAAAAAAAAAAA
AAAAAAA

LD27791.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RA 2323 mol-RA 137..2323 1..2187 10935 100 Plus
mol-RD 3009 mol-RD 843..3009 21..2187 10835 100 Plus
mol-RC 2452 mol-RC 287..2452 22..2187 10830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14975274..14975867 1575..982 2955 99.8 Minus
chr2L 23010047 chr2L 14974535..14975140 2187..1576 2920 98.9 Minus
chr2L 23010047 chr2L 14975997..14976430 984..551 2170 100 Minus
chr2L 23010047 chr2L 14991093..14991293 358..158 1005 100 Minus
chr2L 23010047 chr2L 14992686..14992822 158..22 685 100 Minus
chr2L 23010047 chr2L 14982736..14982870 551..417 675 100 Minus
chr2L 23010047 chr2L 14982982..14983042 416..356 305 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14975747..14976358 2187..1576 3060 100 Minus
2L 23513712 2L 14976492..14977085 1575..982 2970 100 Minus
2L 23513712 2L 14977214..14977647 984..551 2170 100 Minus
2L 23513712 2L 14992307..14992507 358..158 1005 100 Minus
2L 23513712 2L 14993899..14994035 158..22 685 100 Minus
2L 23513712 2L 14983950..14984084 551..417 675 100 Minus
2L 23513712 2L 14984196..14984256 416..356 305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14975747..14976358 2187..1576 3060 100 Minus
2L 23513712 2L 14976492..14977085 1575..982 2970 100 Minus
2L 23513712 2L 14977214..14977647 984..551 2170 100 Minus
2L 23513712 2L 14992307..14992507 358..158 1005 100 Minus
2L 23513712 2L 14993899..14994035 158..22 685 100 Minus
2L 23513712 2L 14983950..14984084 551..417 675 100 Minus
2L 23513712 2L 14984196..14984256 416..356 305 100 Minus
Blast to na_te.dros performed 2019-03-16 19:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1043..1190 1788..1636 178 61.5 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 992..1237 1964..1726 168 57.9 Minus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 11..98 49..134 146 65.9 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 1457..1653 1686..1883 136 57.7 Plus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1960..2101 1808..1953 123 60.1 Plus
gypsy4 6852 gypsy4 GYPSY4 6852bp 5046..5117 1805..1878 121 66.2 Plus
transib4 2656 transib4 TRANSIB4 2656bp 1934..1972 1308..1346 114 76.9 Plus
gypsy6 7826 gypsy6 GYPSY6 7826bp 504..605 1951..1857 114 62.7 Minus

LD27791.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:08 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14974535..14975140 1576..2187 95 <- Minus
chr2L 14975274..14975410 1439..1575 100 == Minus
chr2L 14975499..14975865 984..1350 99 <- Minus
chr2L 14975998..14976429 552..983 100 <- Minus
chr2L 14982736..14982870 417..551 100 <- Minus
chr2L 14982982..14983039 359..416 100 <- Minus
chr2L 14991093..14991292 159..358 100 <- Minus
chr2L 14992686..14992822 22..158 100 <- Minus
chr2L 14996301..14996321 1..21 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:07:27 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1..1425 194..1618 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:37 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1..1425 194..1618 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:22 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RC 1..1425 194..1618 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:22 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1..1425 194..1618 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:56 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RC 1..1425 194..1618 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:26 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RA 21..2207 1..2187 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:37 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RA 21..2207 1..2187 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:22 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RA 24..2210 1..2187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:22 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RA 21..2207 1..2187 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:56 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RA 24..2210 1..2187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:08 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14975747..14976358 1576..2187 100 <- Minus
2L 14976492..14977083 984..1575 100 <- Minus
2L 14977215..14977646 552..983 100 <- Minus
2L 14983950..14984084 417..551 100 <- Minus
2L 14984196..14984253 359..416 100 <- Minus
2L 14992307..14992506 159..358 100 <- Minus
2L 14993899..14994035 22..158 100 <- Minus
2L 14997516..14997536 1..21 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:08 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14975747..14976358 1576..2187 100 <- Minus
2L 14976492..14977083 984..1575 100 <- Minus
2L 14977215..14977646 552..983 100 <- Minus
2L 14983950..14984084 417..551 100 <- Minus
2L 14984196..14984253 359..416 100 <- Minus
2L 14992307..14992506 159..358 100 <- Minus
2L 14993899..14994035 22..158 100 <- Minus
2L 14997516..14997536 1..21 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:08 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14975747..14976358 1576..2187 100 <- Minus
2L 14976492..14977083 984..1575 100 <- Minus
2L 14977215..14977646 552..983 100 <- Minus
2L 14983950..14984084 417..551 100 <- Minus
2L 14984196..14984253 359..416 100 <- Minus
2L 14992307..14992506 159..358 100 <- Minus
2L 14993899..14994035 22..158 100 <- Minus
2L 14997516..14997536 1..21 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:22 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14975747..14976358 1576..2187 100 <- Minus
arm_2L 14976492..14977083 984..1575 100 <- Minus
arm_2L 14977215..14977646 552..983 100 <- Minus
arm_2L 14983950..14984084 417..551 100 <- Minus
arm_2L 14984196..14984253 359..416 100 <- Minus
arm_2L 14992307..14992506 159..358 100 <- Minus
arm_2L 14993899..14994035 22..158 100 <- Minus
arm_2L 14997516..14997536 1..21 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:38 Download gff for LD27791.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14992307..14992506 159..358 100 <- Minus
2L 14993899..14994035 22..158 100 <- Minus
2L 14997516..14997536 1..21 100   Minus
2L 14975747..14976358 1576..2187 100 <- Minus
2L 14976492..14977083 984..1575 100 <- Minus
2L 14977215..14977646 552..983 100 <- Minus
2L 14983950..14984084 417..551 100 <- Minus
2L 14984196..14984253 359..416 100 <- Minus

LD27791.pep Sequence

Translation from 193 to 1617

> LD27791.pep
MKGWFDAFRDDGGPTLYSFSNRTPVTGDVSIVAVSVLFATFYVAFLVIFP
GVRKQKFTTFSTVTLSLFVGLVILITRLGSAWHVAHATIIAPYKAFSREK
LPARIGTHIGLMHVNVTLTAIPIGNWTPPDIDYNERFTWEGANDMSANYR
HALQRGLPFPILTVAEYFSLGREGFSWGGQYRAAGYFASIMLWASLASWL
LMNLLLIAVPRYGAYMKALTGALLVCTTVGYHCLLPKRPLSIHLEGGRLE
FHFGWCYWLVLVAGILCFIAGVLISIIDLVWPHTFSTVLEVYYGTPYDRH
VILEESSDVRYRKPRNSRSLEDPPGLGSRILRRLSSKARDLQPGTAPRRD
SPAGVSSSGGVENKGFQSDAPKSPWRYPFRRSQQMAQQQHSHPLHQHPLQ
QHHQHHQHHHQQQLQFVGGPVVQHPMHHMQRTMSQDSGSSIASAAVQISP
LHKHALARMLPNPPVERIRDMDHW*

LD27791.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14999-PA 473 GF14999-PA 1..473 1..474 2461 97.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24231-PA 474 GG24231-PA 1..474 1..474 2502 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10823-PA 484 GH10823-PA 1..484 1..474 2128 90.1 Plus
Dgri\GH23374-PA 145 GH23374-PA 1..121 1..121 634 99.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
mol-PF 474 CG4482-PF 1..474 1..474 2543 100 Plus
mol-PD 474 CG4482-PD 1..474 1..474 2543 100 Plus
mol-PC 474 CG4482-PC 1..474 1..474 2543 100 Plus
mol-PA 474 CG4482-PA 1..474 1..474 2543 100 Plus
mol-PG 330 CG4482-PG 1..330 145..474 1784 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17335-PA 467 GI17335-PA 1..467 1..474 2120 89.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25732-PA 456 GL25732-PA 1..456 1..474 1987 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25410-PA 483 GA25410-PA 1..483 1..474 2169 90.9 Plus
Dpse\GA25411-PA 372 GA25411-PA 8..372 119..474 1552 87.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14610-PA 1263 GM14610-PA 1..337 1..337 1811 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21978-PA 474 GD21978-PA 1..474 1..474 2521 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16029-PA 476 GJ16029-PA 1..476 1..474 2165 91 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18071-PA 474 GK18071-PA 1..474 1..474 2204 91.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24754-PA 477 GE24754-PA 1..477 1..474 2498 98.7 Plus

LD27791.hyp Sequence

Translation from 193 to 1617

> LD27791.hyp
MKGWFDAFRDDGGPTLYSFSNRTPVTGDVSIVAVSVLFATFYVAFLVIFP
GVRKQKFTTFSTVTLSLFVGLVILITRLGSAWHVAHATIIAPYKAFSREK
LPARIGTHIGLMHVNVTLTAIPIGNWTPPDIDYNERFTWEGANDMSANYR
HALQRGLPFPILTVAEYFSLGREGFSWGGQYRAAGYFASIMLWASLASWL
LMNLLLIAVPRYGAYMKALTGALLVCTTVGYHCLLPKRPLSIHLEGGRLE
FHFGWCYWLVLVAGILCFIAGVLISIIDLVWPHTFSTVLEVYYGTPYDRH
VILEESSDVRYRKPRNSRSLEDPPGLGSRILRRLSSKARDLQPGTAPRRD
SPAGVSSSGGVENKGFQSDAPKSPWRYPFRRSQQMAQQQHSHPLHQHPLQ
QHHQHHQHHHQQQLQFVGGPVVQHPMHHMQRTMSQDSGSSIASAAVQISP
LHKHALARMLPNPPVERIRDMDHW*

LD27791.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
mol-PF 474 CG4482-PF 1..474 1..474 2543 100 Plus
mol-PD 474 CG4482-PD 1..474 1..474 2543 100 Plus
mol-PC 474 CG4482-PC 1..474 1..474 2543 100 Plus
mol-PA 474 CG4482-PA 1..474 1..474 2543 100 Plus
mol-PG 330 CG4482-PG 1..330 145..474 1784 100 Plus