BDGP Sequence Production Resources |
Search the DGRC for LD27847
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 278 |
Well: | 47 |
Vector: | pOT2 |
Associated Gene/Transcript | bora-RA |
Protein status: | LD27847.pep: gold |
Preliminary Size: | 2006 |
Sequenced Size: | 1999 |
Gene | Date | Evidence |
---|---|---|
CG6897 | 2001-01-01 | Release 2 assignment |
CG6897 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6897 | 2003-02-24 | Blastp of sequenced clone |
CG6897 | 2008-04-29 | Release 5.5 accounting |
CG6897 | 2008-08-15 | Release 5.9 accounting |
bora | 2008-12-18 | 5.12 accounting |
1999 bp (1999 high quality bases) assembled on 2003-02-24
GenBank Submission: AY070548
> LD27847.complete ATCTGCCTGCGAGTCGCAGCAGGCGCGCTTGTTTTATTTTAAGTCGAAAT TAGGCGACTTAGTGACTGAAAAAGATGTACAACGACGAGGTGCGAACGCC GCAAGCCCTCAAGAATCGATACATTACAAATGTGAACGGATTGAAGTGCC GGGCGCGCCGTAACAGCCACTCGAACAGCAGCAACTCGTCGGCGGCGTCG GCAACGCCAACGAATGGCGGCAAAGAAAATGGAAAATACAGCCCCCAGAT GTCGGGAAATGTGTGCACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGA ATCCCTTCGAAGGAGCGATGGCCGATCGTTTACACCTGCCACTGATCGCC AGCCCCTCACTTTTCCGCTCGCGGACACCCCAACTCTCGTCCACCCAGTT CGAGTGGAACATTGACGAGGTCTCCCAACTAAAACCCGCCGACGTGGAGC CCCATGAAACCCAGTTCCACGATTCCCCCGATCCCGAGCAGGAATCCAAG GCCCAGTTGGCCATCAGTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAG TCCGGTGGATTGCCCATTGCGAAAACAGCGCATAATACTCAATTGCAGCG AGGACAACACTCCCATATCGAATAAGTCGCGAAGGATGCGGGATTGCGAG GTGCAAACGGAACTTACTTTGCCGCCGATATTGCCAAAAGCCCTAGAGGA TGCCCTGCGTCCGTACTTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCA GGAGCAAGTCAAGTGGTGGTCCCGACATCTTTAATAGTTCCATGCGCCGG AAACTCTTCGATCTGCACAATGTCATTGTTTTGGGCGAACAGGACACGGC AGAGCCATCGAGGTCCATGGTGGGCTCCAGTCCGCAGGGCAAGCAAACAA TGTTCGCTGGCAGACTGTCGGATTCCGCATCCGGGGAAAGTAGCTTCGGC TGCCTTTCACCCATTAGAAACCTATGCGGACTGCCGCCTGGCACGCCCGA TAATGGTACTTGCTCGGGAAAGAGGAAACTTCTAATGCACGAGCTGGAGC TGCCGTCGCCCATTGCCCCGTCGGAGCATCTCAGTCGGAGATTGGTGCAC TCCAAGGTAGAGATCAGCGTTACGGAGCAGCACGACACGTTGTCAGAGCG CACGGCATTGAAGTTCACGCCAGACAGGAGTTCCTCGCCCATGGGCGGCG GACTGGAGCATTCCGATTGCAGCATTAATCAGAGAGTTCGTCGGCTGCGT GTGAATAGCACGCGACAGGTTGTGATCGAGACAGGGGATCAGCCGCTTTT CGAGGAAACTGAGGGGGAGGAAGAGGAGGCTGAATCCGAAGATGACGAGG AGGCGGACGCCATGCAACTATCGACCGTGAGCTTCAACTGCAGCTCTTCC AACTCAGATACTCCGCGCGGACATAAAAGACATCGCTCCGCACAACGCAA GAATCTCTCGCAGTCCTTTAGTGCCAATTTGGAGGAGGAGGCGGATCAGA CACAAGGTGGTGCGGGCTCCATCCAGCCAGCAGAGCCACCATCGGTTGCG ATGCCACAGCAAGGAGCCAGAATTCCGCTATATCGGGCGGACAGTGGCTT CAACGAGACTTCTAGCACGACCTTTGCCTTCTCGCAGGATCTCCCGCTGG ATGTGTCCATGGCCTGCTGCTCCACCCCCTCCACCCGATCTTGACCTCTA CCCTTCGCAGTTCTAGATGGTAGCAACTACATATGTTATTTTATAGGCAA TCTATGCAATAACTCCTTTTCACAGCCAAAAGAAAGGAGGACTTGTTTTT CAACTGCAATGATCACCCACCGTTTATATATATTTTGTATGCGTAATTGT ATGTTCTTATAGAAATCTGCCAAATAGTGAATTAAGTCGTGCGTTTATGT CATTTATAAACTTAACTCAATGCCTTTGTCTAGTTTAGGGTACTTAATAA AAGTCCATTCGATGCCATATTTAATGTAATCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bora-RA | 2141 | bora-RA | 120..2104 | 1..1985 | 9925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18612378..18612729 | 1..352 | 100 | -> | Plus |
chr3L | 18612788..18614416 | 353..1981 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 1..1620 | 75..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 1..1620 | 75..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 1..1620 | 75..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6897-RA | 1..1620 | 75..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 1..1620 | 75..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 20..2000 | 1..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 20..2000 | 1..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 22..2002 | 1..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6897-RA | 20..2000 | 1..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bora-RA | 22..2002 | 1..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18622713..18623064 | 1..352 | 100 | -> | Plus |
3L | 18623123..18624751 | 353..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18622713..18623064 | 1..352 | 100 | -> | Plus |
3L | 18623123..18624751 | 353..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18622713..18623064 | 1..352 | 100 | -> | Plus |
3L | 18623123..18624751 | 353..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18615813..18616164 | 1..352 | 100 | -> | Plus |
arm_3L | 18616223..18617851 | 353..1981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18615813..18616164 | 1..352 | 100 | -> | Plus |
3L | 18616223..18617851 | 353..1981 | 100 | Plus |
Translation from 74 to 1693
> LD27847.pep MYNDEVRTPQALKNRYITNVNGLKCRARRNSHSNSSNSSAASATPTNGGK ENGKYSPQMSGNVCTPPPKRLHKVRNPFEGAMADRLHLPLIASPSLFRSR TPQLSSTQFEWNIDEVSQLKPADVEPHETQFHDSPDPEQESKAQLAISAF FKESLIVPSPVDCPLRKQRIILNCSEDNTPISNKSRRMRDCEVQTELTLP PILPKALEDALRPYFQPHLAGRLSGRSKSSGGPDIFNSSMRRKLFDLHNV IVLGEQDTAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNL CGLPPGTPDNGTCSGKRKLLMHELELPSPIAPSEHLSRRLVHSKVEISVT EQHDTLSERTALKFTPDRSSSPMGGGLEHSDCSINQRVRRLRVNSTRQVV IETGDQPLFEETEGEEEEAESEDDEEADAMQLSTVSFNCSSSNSDTPRGH KRHRSAQRKNLSQSFSANLEEEADQTQGGAGSIQPAEPPSVAMPQQGARI PLYRADSGFNETSSTTFAFSQDLPLDVSMACCSTPSTRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23632-PA | 557 | GF23632-PA | 1..557 | 1..539 | 2177 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13667-PA | 535 | GG13667-PA | 1..535 | 1..539 | 2465 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16808-PA | 587 | GH16808-PA | 1..587 | 1..539 | 1638 | 64.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bora-PA | 539 | CG6897-PA | 1..539 | 1..539 | 2801 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12212-PA | 571 | GI12212-PA | 1..571 | 1..539 | 1638 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22884-PA | 493 | GL22884-PA | 1..492 | 1..538 | 1653 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19938-PA | 544 | GA19938-PA | 1..543 | 1..538 | 1936 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14982-PA | 481 | GM14982-PA | 1..344 | 1..344 | 1722 | 97.7 | Plus |
Dsec\GM14982-PA | 481 | GM14982-PA | 373..481 | 430..539 | 528 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14759-PA | 537 | GD14759-PA | 1..537 | 1..539 | 2762 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11444-PA | 588 | GJ11444-PA | 1..588 | 1..539 | 1634 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11230-PA | 552 | GK11230-PA | 1..552 | 1..539 | 1681 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19963-PA | 536 | GE19963-PA | 1..536 | 1..539 | 2488 | 94.4 | Plus |
Translation from 74 to 1693
> LD27847.hyp MYNDEVRTPQALKNRYITNVNGLKCRARRNSHSNSSNSSAASATPTNGGK ENGKYSPQMSGNVCTPPPKRLHKVRNPFEGAMADRLHLPLIASPSLFRSR TPQLSSTQFEWNIDEVSQLKPADVEPHETQFHDSPDPEQESKAQLAISAF FKESLIVPSPVDCPLRKQRIILNCSEDNTPISNKSRRMRDCEVQTELTLP PILPKALEDALRPYFQPHLAGRLSGRSKSSGGPDIFNSSMRRKLFDLHNV IVLGEQDTAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNL CGLPPGTPDNGTCSGKRKLLMHELELPSPIAPSEHLSRRLVHSKVEISVT EQHDTLSERTALKFTPDRSSSPMGGGLEHSDCSINQRVRRLRVNSTRQVV IETGDQPLFEETEGEEEEAESEDDEEADAMQLSTVSFNCSSSNSDTPRGH KRHRSAQRKNLSQSFSANLEEEADQTQGGAGSIQPAEPPSVAMPQQGARI PLYRADSGFNETSSTTFAFSQDLPLDVSMACCSTPSTRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bora-PA | 539 | CG6897-PA | 1..539 | 1..539 | 2801 | 100 | Plus |