Clone LD27847 Report

Search the DGRC for LD27847

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:278
Well:47
Vector:pOT2
Associated Gene/Transcriptbora-RA
Protein status:LD27847.pep: gold
Preliminary Size:2006
Sequenced Size:1999

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6897 2001-01-01 Release 2 assignment
CG6897 2003-01-01 Sim4 clustering to Release 3
CG6897 2003-02-24 Blastp of sequenced clone
CG6897 2008-04-29 Release 5.5 accounting
CG6897 2008-08-15 Release 5.9 accounting
bora 2008-12-18 5.12 accounting

Clone Sequence Records

LD27847.complete Sequence

1999 bp (1999 high quality bases) assembled on 2003-02-24

GenBank Submission: AY070548

> LD27847.complete
ATCTGCCTGCGAGTCGCAGCAGGCGCGCTTGTTTTATTTTAAGTCGAAAT
TAGGCGACTTAGTGACTGAAAAAGATGTACAACGACGAGGTGCGAACGCC
GCAAGCCCTCAAGAATCGATACATTACAAATGTGAACGGATTGAAGTGCC
GGGCGCGCCGTAACAGCCACTCGAACAGCAGCAACTCGTCGGCGGCGTCG
GCAACGCCAACGAATGGCGGCAAAGAAAATGGAAAATACAGCCCCCAGAT
GTCGGGAAATGTGTGCACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGA
ATCCCTTCGAAGGAGCGATGGCCGATCGTTTACACCTGCCACTGATCGCC
AGCCCCTCACTTTTCCGCTCGCGGACACCCCAACTCTCGTCCACCCAGTT
CGAGTGGAACATTGACGAGGTCTCCCAACTAAAACCCGCCGACGTGGAGC
CCCATGAAACCCAGTTCCACGATTCCCCCGATCCCGAGCAGGAATCCAAG
GCCCAGTTGGCCATCAGTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAG
TCCGGTGGATTGCCCATTGCGAAAACAGCGCATAATACTCAATTGCAGCG
AGGACAACACTCCCATATCGAATAAGTCGCGAAGGATGCGGGATTGCGAG
GTGCAAACGGAACTTACTTTGCCGCCGATATTGCCAAAAGCCCTAGAGGA
TGCCCTGCGTCCGTACTTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCA
GGAGCAAGTCAAGTGGTGGTCCCGACATCTTTAATAGTTCCATGCGCCGG
AAACTCTTCGATCTGCACAATGTCATTGTTTTGGGCGAACAGGACACGGC
AGAGCCATCGAGGTCCATGGTGGGCTCCAGTCCGCAGGGCAAGCAAACAA
TGTTCGCTGGCAGACTGTCGGATTCCGCATCCGGGGAAAGTAGCTTCGGC
TGCCTTTCACCCATTAGAAACCTATGCGGACTGCCGCCTGGCACGCCCGA
TAATGGTACTTGCTCGGGAAAGAGGAAACTTCTAATGCACGAGCTGGAGC
TGCCGTCGCCCATTGCCCCGTCGGAGCATCTCAGTCGGAGATTGGTGCAC
TCCAAGGTAGAGATCAGCGTTACGGAGCAGCACGACACGTTGTCAGAGCG
CACGGCATTGAAGTTCACGCCAGACAGGAGTTCCTCGCCCATGGGCGGCG
GACTGGAGCATTCCGATTGCAGCATTAATCAGAGAGTTCGTCGGCTGCGT
GTGAATAGCACGCGACAGGTTGTGATCGAGACAGGGGATCAGCCGCTTTT
CGAGGAAACTGAGGGGGAGGAAGAGGAGGCTGAATCCGAAGATGACGAGG
AGGCGGACGCCATGCAACTATCGACCGTGAGCTTCAACTGCAGCTCTTCC
AACTCAGATACTCCGCGCGGACATAAAAGACATCGCTCCGCACAACGCAA
GAATCTCTCGCAGTCCTTTAGTGCCAATTTGGAGGAGGAGGCGGATCAGA
CACAAGGTGGTGCGGGCTCCATCCAGCCAGCAGAGCCACCATCGGTTGCG
ATGCCACAGCAAGGAGCCAGAATTCCGCTATATCGGGCGGACAGTGGCTT
CAACGAGACTTCTAGCACGACCTTTGCCTTCTCGCAGGATCTCCCGCTGG
ATGTGTCCATGGCCTGCTGCTCCACCCCCTCCACCCGATCTTGACCTCTA
CCCTTCGCAGTTCTAGATGGTAGCAACTACATATGTTATTTTATAGGCAA
TCTATGCAATAACTCCTTTTCACAGCCAAAAGAAAGGAGGACTTGTTTTT
CAACTGCAATGATCACCCACCGTTTATATATATTTTGTATGCGTAATTGT
ATGTTCTTATAGAAATCTGCCAAATAGTGAATTAAGTCGTGCGTTTATGT
CATTTATAAACTTAACTCAATGCCTTTGTCTAGTTTAGGGTACTTAATAA
AAGTCCATTCGATGCCATATTTAATGTAATCAAAAAAAAAAAAAAAAAA

LD27847.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
bora-RA 2141 bora-RA 120..2104 1..1985 9925 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18612785..18614416 350..1981 8145 99.9 Plus
chr3L 24539361 chr3L 18612378..18612729 1..352 1760 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18623120..18624755 350..1985 8180 100 Plus
3L 28110227 3L 18622713..18623064 1..352 1760 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18616220..18617855 350..1985 8180 100 Plus
3L 28103327 3L 18615813..18616164 1..352 1760 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:36:36 has no hits.

LD27847.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:42 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18612378..18612729 1..352 100 -> Plus
chr3L 18612788..18614416 353..1981 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:20 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 1..1620 75..1694 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:22 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 1..1620 75..1694 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:50 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 1..1620 75..1694 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:52 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6897-RA 1..1620 75..1694 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:28 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 1..1620 75..1694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:50 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 20..2000 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:21 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 20..2000 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:50 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 22..2002 1..1981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:52 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6897-RA 20..2000 1..1981 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:28 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
bora-RA 22..2002 1..1981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:42 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18622713..18623064 1..352 100 -> Plus
3L 18623123..18624751 353..1981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:42 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18622713..18623064 1..352 100 -> Plus
3L 18623123..18624751 353..1981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:42 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18622713..18623064 1..352 100 -> Plus
3L 18623123..18624751 353..1981 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:50 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18615813..18616164 1..352 100 -> Plus
arm_3L 18616223..18617851 353..1981 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:06 Download gff for LD27847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18615813..18616164 1..352 100 -> Plus
3L 18616223..18617851 353..1981 100   Plus

LD27847.pep Sequence

Translation from 74 to 1693

> LD27847.pep
MYNDEVRTPQALKNRYITNVNGLKCRARRNSHSNSSNSSAASATPTNGGK
ENGKYSPQMSGNVCTPPPKRLHKVRNPFEGAMADRLHLPLIASPSLFRSR
TPQLSSTQFEWNIDEVSQLKPADVEPHETQFHDSPDPEQESKAQLAISAF
FKESLIVPSPVDCPLRKQRIILNCSEDNTPISNKSRRMRDCEVQTELTLP
PILPKALEDALRPYFQPHLAGRLSGRSKSSGGPDIFNSSMRRKLFDLHNV
IVLGEQDTAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNL
CGLPPGTPDNGTCSGKRKLLMHELELPSPIAPSEHLSRRLVHSKVEISVT
EQHDTLSERTALKFTPDRSSSPMGGGLEHSDCSINQRVRRLRVNSTRQVV
IETGDQPLFEETEGEEEEAESEDDEEADAMQLSTVSFNCSSSNSDTPRGH
KRHRSAQRKNLSQSFSANLEEEADQTQGGAGSIQPAEPPSVAMPQQGARI
PLYRADSGFNETSSTTFAFSQDLPLDVSMACCSTPSTRS*

LD27847.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23632-PA 557 GF23632-PA 1..557 1..539 2177 79.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13667-PA 535 GG13667-PA 1..535 1..539 2465 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16808-PA 587 GH16808-PA 1..587 1..539 1638 64.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
bora-PA 539 CG6897-PA 1..539 1..539 2801 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12212-PA 571 GI12212-PA 1..571 1..539 1638 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22884-PA 493 GL22884-PA 1..492 1..538 1653 66.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19938-PA 544 GA19938-PA 1..543 1..538 1936 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14982-PA 481 GM14982-PA 1..344 1..344 1722 97.7 Plus
Dsec\GM14982-PA 481 GM14982-PA 373..481 430..539 528 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14759-PA 537 GD14759-PA 1..537 1..539 2762 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11444-PA 588 GJ11444-PA 1..588 1..539 1634 63.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11230-PA 552 GK11230-PA 1..552 1..539 1681 66.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19963-PA 536 GE19963-PA 1..536 1..539 2488 94.4 Plus

LD27847.hyp Sequence

Translation from 74 to 1693

> LD27847.hyp
MYNDEVRTPQALKNRYITNVNGLKCRARRNSHSNSSNSSAASATPTNGGK
ENGKYSPQMSGNVCTPPPKRLHKVRNPFEGAMADRLHLPLIASPSLFRSR
TPQLSSTQFEWNIDEVSQLKPADVEPHETQFHDSPDPEQESKAQLAISAF
FKESLIVPSPVDCPLRKQRIILNCSEDNTPISNKSRRMRDCEVQTELTLP
PILPKALEDALRPYFQPHLAGRLSGRSKSSGGPDIFNSSMRRKLFDLHNV
IVLGEQDTAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNL
CGLPPGTPDNGTCSGKRKLLMHELELPSPIAPSEHLSRRLVHSKVEISVT
EQHDTLSERTALKFTPDRSSSPMGGGLEHSDCSINQRVRRLRVNSTRQVV
IETGDQPLFEETEGEEEEAESEDDEEADAMQLSTVSFNCSSSNSDTPRGH
KRHRSAQRKNLSQSFSANLEEEADQTQGGAGSIQPAEPPSVAMPQQGARI
PLYRADSGFNETSSTTFAFSQDLPLDVSMACCSTPSTRS*

LD27847.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
bora-PA 539 CG6897-PA 1..539 1..539 2801 100 Plus