Clone LD27852 Report

Search the DGRC for LD27852

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:278
Well:52
Vector:pOT2
Associated Gene/TranscriptGale-RA
Protein status:LD27852.pep: gold
Preliminary Size:1945
Sequenced Size:1804

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12030 2001-01-01 Release 2 assignment
CG12030 2001-09-19 Blastp of sequenced clone
CG12030 2003-01-01 Sim4 clustering to Release 3
CG12030 2008-04-29 Release 5.5 accounting
CG12030 2008-08-15 Release 5.9 accounting
CG12030 2008-12-18 5.12 accounting

Clone Sequence Records

LD27852.complete Sequence

1804 bp (1804 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058582

> LD27852.complete
AGAGCGAAGTGAAGAGCACCTGGAAATTGCATTAATGGGCATGGAATCGG
GAGCCAAAGGTCAGCGGCGATAAGGATGCACTTCGAGGTGACCCCGGCCG
TCCGTCGACCAAGTCAGCCTGCTGCTAGCACTTGAATTAAAGTGACAGGA
GAGCTCCGAGCCCACCAAACCACCGAAACTGATAAGAAGTGCGCGTTCGG
AGAACGGAGAACAAGTTAAATAGGCTCCGTGGAGAGCCACCAGTTCAGTT
GGCCAGCGACCGCAGATCAAAACAGACGTACGACAACACAGATGAATGAG
GAAGAGTGCAAGAAACGGGTTAGCACACGATAGCACTCAACGGTCAGCGA
TCTTTGGCATCTTCATCTACACCATCATCTGCAATCTCGTCGGAGATCAG
AGGCGTTGTTTTTAGGCATCGGAATCCGAGGCGGAATCGTTTCAAGGGCA
CGTCTCTTGCGTCTAGCTAAACTCAATCTGATTCACTGAGCGGGGATTCT
CTACCATAATCACCTGTAAACAGGATGGCCCCACCCACGGTCCTGGTCAC
CGGAGGAGCCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATG
CGGGCTACAACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGC
GGGGCCAAACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAA
GAAGGTCAACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCT
CCGTCTTCCAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTG
AAGGCCGTGGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAA
CATGACCGGCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCT
TCAAGTTCGTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTC
CTGCCCGTGACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGG
CAAGACTAAATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTG
ACAAGCGTTGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCC
CACATCAGTGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCT
GATGCCCTACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTG
TCTACGGCAGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTAC
ATCCACATCGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCT
GCGCAACATCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCG
TGGGCTACTCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGC
AAGAAGGTCAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCAC
TTGCTATGCGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCG
AGCGTGGCATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAG
AACCCAAACGGGTATGCCAACAAGTAGAGCTGTATATCGCCACGTTCCTG
CCGCTCCGCAAGTTCCTGAGTTACTACGCCTGATAATGGCTCAGGTAGCA
ATTTCTATTTGCCTCTAGTTGTGTATATTTCTTTCCAAATTTCGTGTAGT
ATTCGCTCACTTCGATGTGTGCAAGTGTGCGTATGTAATCCAAAGTACTT
TGTAATTAAAAAGGCTTTTCGCTGTTGTCATGTAAAAAAAAAAAAAAAAA
AAAA

LD27852.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-RA 2227 CG12030-RA 119..1903 1..1785 8925 100 Plus
CG12030.d 2350 CG12030.d 119..1903 1..1785 8925 100 Plus
CG12030.a 1848 CG12030.a 587..1848 522..1783 6310 100 Plus
CG12030.a 1848 CG12030.a 13..535 1..523 2615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 650382..651111 1054..1783 3620 99.7 Plus
chr3L 24539361 chr3L 648332..648855 1..524 2440 97.7 Plus
chr3L 24539361 chr3L 650031..650323 763..1055 1420 99 Plus
chr3L 24539361 chr3L 648980..649222 522..764 1200 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651313 1054..1785 3660 100 Plus
3L 28110227 3L 648529..649052 1..524 2620 100 Plus
3L 28110227 3L 650231..650523 763..1055 1465 100 Plus
3L 28110227 3L 649177..649419 522..764 1215 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 650582..651313 1054..1785 3660 100 Plus
3L 28103327 3L 648529..649052 1..524 2620 100 Plus
3L 28103327 3L 650231..650523 763..1055 1465 100 Plus
3L 28103327 3L 649177..649419 522..764 1215 100 Plus
Blast to na_te.dros performed 2019-03-15 18:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 931..893 123 79.5 Minus

LD27852.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:51 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 648332..648854 1..523 97 -> Plus
chr3L 648982..649222 524..764 99 -> Plus
chr3L 650033..650323 765..1055 98 -> Plus
chr3L 650384..651111 1056..1783 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:21 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 1..1053 525..1577 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:23 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 1..1053 525..1577 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:29 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 1..1053 525..1577 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:54 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 1..1053 525..1577 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:43 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 1..1053 525..1577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:40 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 13..1795 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:23 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 13..1795 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:29 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 1..1757 27..1783 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:55 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 13..1795 1..1783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:43 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 1..1757 27..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:51 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 648529..649051 1..523 100 -> Plus
3L 649179..649419 524..764 100 -> Plus
3L 650233..650523 765..1055 100 -> Plus
3L 650584..651311 1056..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:51 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 648529..649051 1..523 100 -> Plus
3L 649179..649419 524..764 100 -> Plus
3L 650233..650523 765..1055 100 -> Plus
3L 650584..651311 1056..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:51 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 648529..649051 1..523 100 -> Plus
3L 649179..649419 524..764 100 -> Plus
3L 650233..650523 765..1055 100 -> Plus
3L 650584..651311 1056..1783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:29 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 648529..649051 1..523 100 -> Plus
arm_3L 649179..649419 524..764 100 -> Plus
arm_3L 650233..650523 765..1055 100 -> Plus
arm_3L 650584..651311 1056..1783 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:37 Download gff for LD27852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 648529..649051 1..523 100 -> Plus
3L 649179..649419 524..764 100 -> Plus
3L 650233..650523 765..1055 100 -> Plus
3L 650584..651311 1056..1783 100   Plus

LD27852.pep Sequence

Translation from 524 to 1576

> LD27852.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
*

LD27852.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24461-PA 351 GF24461-PA 1..351 1..350 1835 97.2 Plus
Dana\GF25098-PA 436 GF25098-PA 115..401 6..326 150 24.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14731-PA 350 GG14731-PA 1..350 1..350 1886 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15414-PA 351 GH15414-PA 1..351 1..350 1780 94 Plus
Dgri\GH15492-PA 445 GH15492-PA 117..401 6..324 163 24.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-PB 350 CG12030-PB 1..350 1..350 1861 100 Plus
Gale-PA 350 CG12030-PA 1..350 1..350 1861 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13017-PA 351 GI13017-PA 1..351 1..350 1783 93.7 Plus
Dmoj\GI24017-PA 98 GI24017-PA 1..81 1..80 401 95.1 Plus
Dmoj\GI16768-PA 447 GI16768-PA 119..403 6..324 163 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20702-PA 688 GL20702-PA 339..688 1..350 1823 95.4 Plus
Dper\GL22533-PA 454 GL22533-PA 126..422 6..336 153 23.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11351-PA 558 GA11351-PA 209..558 1..350 1821 95.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14349-PA 350 GM14349-PA 1..350 1..350 1886 99.4 Plus
Dsec\GM25024-PA 441 GM25024-PA 118..414 6..336 150 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13563-PA 350 GD13563-PA 1..350 1..350 1889 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12110-PA 351 GJ12110-PA 1..351 1..350 1794 95.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17514-PA 351 GK17514-PA 1..351 1..350 1803 95.4 Plus
Dwil\GK11988-PA 447 GK11988-PA 119..403 6..324 155 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21095-PA 350 GE21095-PA 1..350 1..350 1889 99.7 Plus

LD27852.hyp Sequence

Translation from 524 to 1576

> LD27852.hyp
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
*

LD27852.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-PB 350 CG12030-PB 1..350 1..350 1861 100 Plus
Gale-PA 350 CG12030-PA 1..350 1..350 1861 100 Plus