BDGP Sequence Production Resources |
Search the DGRC for LD27852
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 278 |
Well: | 52 |
Vector: | pOT2 |
Associated Gene/Transcript | Gale-RA |
Protein status: | LD27852.pep: gold |
Preliminary Size: | 1945 |
Sequenced Size: | 1804 |
Gene | Date | Evidence |
---|---|---|
CG12030 | 2001-01-01 | Release 2 assignment |
CG12030 | 2001-09-19 | Blastp of sequenced clone |
CG12030 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12030 | 2008-04-29 | Release 5.5 accounting |
CG12030 | 2008-08-15 | Release 5.9 accounting |
CG12030 | 2008-12-18 | 5.12 accounting |
1804 bp (1804 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058582
> LD27852.complete AGAGCGAAGTGAAGAGCACCTGGAAATTGCATTAATGGGCATGGAATCGG GAGCCAAAGGTCAGCGGCGATAAGGATGCACTTCGAGGTGACCCCGGCCG TCCGTCGACCAAGTCAGCCTGCTGCTAGCACTTGAATTAAAGTGACAGGA GAGCTCCGAGCCCACCAAACCACCGAAACTGATAAGAAGTGCGCGTTCGG AGAACGGAGAACAAGTTAAATAGGCTCCGTGGAGAGCCACCAGTTCAGTT GGCCAGCGACCGCAGATCAAAACAGACGTACGACAACACAGATGAATGAG GAAGAGTGCAAGAAACGGGTTAGCACACGATAGCACTCAACGGTCAGCGA TCTTTGGCATCTTCATCTACACCATCATCTGCAATCTCGTCGGAGATCAG AGGCGTTGTTTTTAGGCATCGGAATCCGAGGCGGAATCGTTTCAAGGGCA CGTCTCTTGCGTCTAGCTAAACTCAATCTGATTCACTGAGCGGGGATTCT CTACCATAATCACCTGTAAACAGGATGGCCCCACCCACGGTCCTGGTCAC CGGAGGAGCCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATG CGGGCTACAACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGC GGGGCCAAACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAA GAAGGTCAACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCT CCGTCTTCCAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTG AAGGCCGTGGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAA CATGACCGGCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCT TCAAGTTCGTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTC CTGCCCGTGACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGG CAAGACTAAATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTG ACAAGCGTTGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCC CACATCAGTGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCT GATGCCCTACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTG TCTACGGCAGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTAC ATCCACATCGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCT GCGCAACATCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCG TGGGCTACTCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGC AAGAAGGTCAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCAC TTGCTATGCGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCG AGCGTGGCATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAG AACCCAAACGGGTATGCCAACAAGTAGAGCTGTATATCGCCACGTTCCTG CCGCTCCGCAAGTTCCTGAGTTACTACGCCTGATAATGGCTCAGGTAGCA ATTTCTATTTGCCTCTAGTTGTGTATATTTCTTTCCAAATTTCGTGTAGT ATTCGCTCACTTCGATGTGTGCAAGTGTGCGTATGTAATCCAAAGTACTT TGTAATTAAAAAGGCTTTTCGCTGTTGTCATGTAAAAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12030-RA | 2227 | CG12030-RA | 119..1903 | 1..1785 | 8925 | 100 | Plus |
CG12030.d | 2350 | CG12030.d | 119..1903 | 1..1785 | 8925 | 100 | Plus |
CG12030.a | 1848 | CG12030.a | 587..1848 | 522..1783 | 6310 | 100 | Plus |
CG12030.a | 1848 | CG12030.a | 13..535 | 1..523 | 2615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 650382..651111 | 1054..1783 | 3620 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 648332..648855 | 1..524 | 2440 | 97.7 | Plus |
chr3L | 24539361 | chr3L | 650031..650323 | 763..1055 | 1420 | 99 | Plus |
chr3L | 24539361 | chr3L | 648980..649222 | 522..764 | 1200 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 650582..651313 | 1054..1785 | 3660 | 100 | Plus |
3L | 28110227 | 3L | 648529..649052 | 1..524 | 2620 | 100 | Plus |
3L | 28110227 | 3L | 650231..650523 | 763..1055 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649177..649419 | 522..764 | 1215 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 650582..651313 | 1054..1785 | 3660 | 100 | Plus |
3L | 28103327 | 3L | 648529..649052 | 1..524 | 2620 | 100 | Plus |
3L | 28103327 | 3L | 650231..650523 | 763..1055 | 1465 | 100 | Plus |
3L | 28103327 | 3L | 649177..649419 | 522..764 | 1215 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 931..893 | 123 | 79.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 648332..648854 | 1..523 | 97 | -> | Plus |
chr3L | 648982..649222 | 524..764 | 99 | -> | Plus |
chr3L | 650033..650323 | 765..1055 | 98 | -> | Plus |
chr3L | 650384..651111 | 1056..1783 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12030-RA | 1..1053 | 525..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12030-RA | 1..1053 | 525..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gale-RA | 1..1053 | 525..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12030-RA | 1..1053 | 525..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gale-RA | 1..1053 | 525..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12030-RA | 13..1795 | 1..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12030-RA | 13..1795 | 1..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gale-RA | 1..1757 | 27..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12030-RA | 13..1795 | 1..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gale-RA | 1..1757 | 27..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 648529..649051 | 1..523 | 100 | -> | Plus |
3L | 649179..649419 | 524..764 | 100 | -> | Plus |
3L | 650233..650523 | 765..1055 | 100 | -> | Plus |
3L | 650584..651311 | 1056..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 648529..649051 | 1..523 | 100 | -> | Plus |
3L | 649179..649419 | 524..764 | 100 | -> | Plus |
3L | 650233..650523 | 765..1055 | 100 | -> | Plus |
3L | 650584..651311 | 1056..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 648529..649051 | 1..523 | 100 | -> | Plus |
3L | 649179..649419 | 524..764 | 100 | -> | Plus |
3L | 650233..650523 | 765..1055 | 100 | -> | Plus |
3L | 650584..651311 | 1056..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 648529..649051 | 1..523 | 100 | -> | Plus |
arm_3L | 649179..649419 | 524..764 | 100 | -> | Plus |
arm_3L | 650233..650523 | 765..1055 | 100 | -> | Plus |
arm_3L | 650584..651311 | 1056..1783 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 648529..649051 | 1..523 | 100 | -> | Plus |
3L | 649179..649419 | 524..764 | 100 | -> | Plus |
3L | 650233..650523 | 765..1055 | 100 | -> | Plus |
3L | 650584..651311 | 1056..1783 | 100 | Plus |
Translation from 524 to 1576
> LD27852.pep MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24461-PA | 351 | GF24461-PA | 1..351 | 1..350 | 1835 | 97.2 | Plus |
Dana\GF25098-PA | 436 | GF25098-PA | 115..401 | 6..326 | 150 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14731-PA | 350 | GG14731-PA | 1..350 | 1..350 | 1886 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15414-PA | 351 | GH15414-PA | 1..351 | 1..350 | 1780 | 94 | Plus |
Dgri\GH15492-PA | 445 | GH15492-PA | 117..401 | 6..324 | 163 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gale-PB | 350 | CG12030-PB | 1..350 | 1..350 | 1861 | 100 | Plus |
Gale-PA | 350 | CG12030-PA | 1..350 | 1..350 | 1861 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13017-PA | 351 | GI13017-PA | 1..351 | 1..350 | 1783 | 93.7 | Plus |
Dmoj\GI24017-PA | 98 | GI24017-PA | 1..81 | 1..80 | 401 | 95.1 | Plus |
Dmoj\GI16768-PA | 447 | GI16768-PA | 119..403 | 6..324 | 163 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20702-PA | 688 | GL20702-PA | 339..688 | 1..350 | 1823 | 95.4 | Plus |
Dper\GL22533-PA | 454 | GL22533-PA | 126..422 | 6..336 | 153 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11351-PA | 558 | GA11351-PA | 209..558 | 1..350 | 1821 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14349-PA | 350 | GM14349-PA | 1..350 | 1..350 | 1886 | 99.4 | Plus |
Dsec\GM25024-PA | 441 | GM25024-PA | 118..414 | 6..336 | 150 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13563-PA | 350 | GD13563-PA | 1..350 | 1..350 | 1889 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12110-PA | 351 | GJ12110-PA | 1..351 | 1..350 | 1794 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17514-PA | 351 | GK17514-PA | 1..351 | 1..350 | 1803 | 95.4 | Plus |
Dwil\GK11988-PA | 447 | GK11988-PA | 119..403 | 6..324 | 155 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21095-PA | 350 | GE21095-PA | 1..350 | 1..350 | 1889 | 99.7 | Plus |
Translation from 524 to 1576
> LD27852.hyp MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK *