Clone LD27878 Report

Search the DGRC for LD27878

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:278
Well:78
Vector:pOT2
Associated Gene/TranscriptAc3-RC
Protein status:LD27878.pep: gold
Preliminary Size:1908
Sequenced Size:1870

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1506 2001-01-01 Release 2 assignment
CG1506 2001-10-10 Blastp of sequenced clone
CG1506 2003-01-01 Sim4 clustering to Release 3
Ac3 2008-04-29 Release 5.5 accounting
Ac3 2008-08-15 Release 5.9 accounting
Ac3 2008-12-18 5.12 accounting

Clone Sequence Records

LD27878.complete Sequence

1870 bp (1870 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061347

> LD27878.complete
TTATGTTCTTGTCACATTACAAACAAATAAACCAAGGACATGGTGTCGCT
TTATTACTAAACCACAAATACGAAATAAGCTCTCCGAACAACGAATAACA
TCCTAGAAGTTAGACAAACGAGATGGAAGCAAATTTGGAGAACGGTCAGA
AAACGATCGCCTCGACAAGCAAATCGCATTCGCAGCGTCAAACAACATCT
CGACGGCGGCAAAACGACAGCGATGTGGCCGGAGGCGTGGGAATCACCGG
TGGGGGAGTCGTCATTTTGCCGCAGCACGTGCTTAACGAACTCTACCACA
ACTACTCCATCAAACAACGCCGCAGTGGATTGAAGTGGTTTGTCTTTGCG
GCCGCGTTGTTTAACATATGGACCATCGGAATTCCCTGGGATCAGTCGGC
CCCTACGAGAGTGATCAACTGTTGTATGCTGTTAGCTTACTTGGCATTGA
CAGCGCTCCTTCATATTGGACGCCGTTCTGATAAACCGGCACTGAGGCGC
TTCCACCAAATACTCCTGATTATTGTGCCACGGGCACTGTGGCTATTAAG
CATTCTTCATTTTACCGTTTATGTTATTCTGCAGCCTAGTTTTTCTCCAA
GGGACCTACTTGGCTGGGCCATCCTTCTAAATTTCTTGGTCTATGTGACG
CTGCCATTACAGCTGATTTTTCTTGGTCTGTCGATTGGATGTATCACATA
TTTCATTTGCCTCAGTCTCCCTGTTGGTTATTCTCACTGGGACTCGCTGC
TCTCGAACCAATTAGCGGCTAATGCAGTTTTGATAGCCACGGCAGCGCTG
ATAGGCCTTTTGTACTACTTTATGGGTGAGGCCAAGCAGAAACGAGCCTT
TCTCGAGGCCAAAAAGAGCCTTGAAGTTAAAATGGTCATAGAGGAACAGT
CGGCCGAACAGGAGCGTCTGCTATTGTCTGTGCTGCCAAAGCATGTGGCT
ATTAAGATGCGGGAAGATTTGGGATCATCCAGTTCCGAGGCTTTTAAAAA
AATTTACATGAGTCGGCACGAGAATGTAAGAAATATCAACAATTGCGCAT
TAAGATTCTTGGCGATTGCTACTACTGTATTAGCGGTGCCCCTGATGAGC
GTCCAGATCACGCCGTCCTGTGTGTGCACATGGGACTCTCCATGGTGAAG
GCCATTAAGTATGTGCAGCAGAAGGCCAACTCACCTGTTGACATGCGAGT
AGGCATTCACACTGGAGCCGTGCTCGCTGGAATTCTTGGGCAGCGACAGT
GGCAGTTTGATGTTTACTCTAAGGACGTAGAGCTGGCTAATAAAATGGAA
TCGAGCGGAAAGGCTGGACGCGTTCACATTTCGGACAAAACGCTTGCCTT
TCTGAACGGCGAATTCGAAGTGGAGGCCGCCTTTGGAGAGAAACGAGAGG
AGTTGTTGCGTATTGCTGGGCTAAAGACGTATTTTATCACCAAAGTAGTT
AAAGCGTTTGCATCGCCATGTGCCAAAAAAATAAATGAAACCCAGGCTGA
AATTGCACACCCCAATCCTAATGGATCGACGACCGATATTGTATCAGATG
AAGATGACAACGATGCCACATTAGACGACGAAGAGCTCCTGGCGCAGAAT
TCTGTATCCAATGGACACCAAATAGGGATTGCAGTGACTGCAGATGAAGA
GGAGCAGGTGAAATTGGAGAACTTTAAACAACGACTGAAAGATGAGCTGG
TAACGCGCGACGGACATGAGTAAGCAAATATTTGCTATATATATCGTATA
TCGTATATATAGTACATGTTACTATAGCGTAACATACTTTAGCACATTAC
GAATAAAGTAATTTGACGAAATATATTGGAGAAACTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD27878.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-RC 2275 Ac3-RC 166..2006 1..1841 9205 100 Plus
Ac3-RA 5220 Ac3-RA 453..1482 1..1030 5150 100 Plus
Ac3.a 5463 Ac3.a 696..1725 1..1030 5150 100 Plus
Ac3-RA 5220 Ac3-RA 1593..2283 1029..1719 3455 100 Plus
Ac3.a 5463 Ac3.a 1836..2526 1029..1719 3455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21632009..21632419 1..411 2055 100 Plus
chr2L 23010047 chr2L 21637745..21638125 1456..1836 1905 100 Plus
chr2L 23010047 chr2L 21633229..21633541 600..912 1565 100 Plus
chr2L 23010047 chr2L 21632923..21633115 410..602 965 100 Plus
chr2L 23010047 chr2L 21636463..21636621 1159..1317 795 100 Plus
chr2L 23010047 chr2L 21636734..21636873 1317..1456 700 100 Plus
chr2L 23010047 chr2L 21636162..21636294 1029..1161 665 100 Plus
chr2L 23010047 chr2L 21633595..21633715 910..1030 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21633505..21633915 1..411 2055 100 Plus
2L 23513712 2L 21639240..21639625 1456..1841 1930 100 Plus
2L 23513712 2L 21634724..21635036 600..912 1565 100 Plus
2L 23513712 2L 21634418..21634610 410..602 965 100 Plus
2L 23513712 2L 21637958..21638116 1159..1317 795 100 Plus
2L 23513712 2L 21638229..21638368 1317..1456 700 100 Plus
2L 23513712 2L 21637657..21637789 1029..1161 665 100 Plus
2L 23513712 2L 21635090..21635210 910..1030 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21633505..21633915 1..411 2055 100 Plus
2L 23513712 2L 21639240..21639625 1456..1841 1930 100 Plus
2L 23513712 2L 21634724..21635036 600..912 1565 100 Plus
2L 23513712 2L 21634418..21634610 410..602 965 100 Plus
2L 23513712 2L 21637958..21638116 1159..1317 795 100 Plus
2L 23513712 2L 21638229..21638368 1317..1456 700 100 Plus
2L 23513712 2L 21637657..21637789 1029..1161 665 100 Plus
2L 23513712 2L 21635090..21635210 910..1030 605 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:37:06 has no hits.

LD27878.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:37:55 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21632009..21632419 1..411 100 -> Plus
chr2L 21632925..21633114 412..601 100 -> Plus
chr2L 21633231..21633540 602..911 100 -> Plus
chr2L 21633597..21633715 912..1030 100 -> Plus
chr2L 21636164..21636291 1031..1158 100 -> Plus
chr2L 21636463..21636621 1159..1317 100 -> Plus
chr2L 21636735..21636873 1318..1456 100 -> Plus
chr2L 21637746..21638125 1457..1836 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:26 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:44 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:16:03 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:48 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1026 123..1148 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:12 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1026 123..1148 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:16 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1836 1..1836 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:44 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1836 1..1836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:16:03 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 291..2126 1..1836 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:48 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 1..1836 1..1836 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:12 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 291..2126 1..1836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:55 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21633505..21633915 1..411 100 -> Plus
2L 21634420..21634609 412..601 100 -> Plus
2L 21634726..21635035 602..911 100 -> Plus
2L 21635092..21635210 912..1030 100 -> Plus
2L 21637659..21637786 1031..1158 100 -> Plus
2L 21637958..21638116 1159..1317 100 -> Plus
2L 21638230..21638368 1318..1456 100 -> Plus
2L 21639241..21639620 1457..1836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:55 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21633505..21633915 1..411 100 -> Plus
2L 21634420..21634609 412..601 100 -> Plus
2L 21634726..21635035 602..911 100 -> Plus
2L 21635092..21635210 912..1030 100 -> Plus
2L 21637659..21637786 1031..1158 100 -> Plus
2L 21637958..21638116 1159..1317 100 -> Plus
2L 21638230..21638368 1318..1456 100 -> Plus
2L 21639241..21639620 1457..1836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:55 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21633505..21633915 1..411 100 -> Plus
2L 21634420..21634609 412..601 100 -> Plus
2L 21634726..21635035 602..911 100 -> Plus
2L 21635092..21635210 912..1030 100 -> Plus
2L 21637659..21637786 1031..1158 100 -> Plus
2L 21637958..21638116 1159..1317 100 -> Plus
2L 21638230..21638368 1318..1456 100 -> Plus
2L 21639241..21639620 1457..1836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:16:03 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21634420..21634609 412..601 100 -> Plus
arm_2L 21633505..21633915 1..411 100 -> Plus
arm_2L 21634726..21635035 602..911 100 -> Plus
arm_2L 21635092..21635210 912..1030 100 -> Plus
arm_2L 21637659..21637786 1031..1158 100 -> Plus
arm_2L 21637958..21638116 1159..1317 100 -> Plus
arm_2L 21638230..21638368 1318..1456 100 -> Plus
arm_2L 21639241..21639620 1457..1836 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:56 Download gff for LD27878.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21637659..21637786 1031..1158 100 -> Plus
2L 21637958..21638116 1159..1317 100 -> Plus
2L 21638230..21638368 1318..1456 100 -> Plus
2L 21639241..21639620 1457..1836 100   Plus
2L 21633505..21633915 1..411 100 -> Plus
2L 21634420..21634609 412..601 100 -> Plus
2L 21634726..21635035 602..911 100 -> Plus
2L 21635092..21635210 912..1030 100 -> Plus

LD27878.pep Sequence

Translation from 122 to 1147

> LD27878.pep
MEANLENGQKTIASTSKSHSQRQTTSRRRQNDSDVAGGVGITGGGVVILP
QHVLNELYHNYSIKQRRSGLKWFVFAAALFNIWTIGIPWDQSAPTRVINC
CMLLAYLALTALLHIGRRSDKPALRRFHQILLIIVPRALWLLSILHFTVY
VILQPSFSPRDLLGWAILLNFLVYVTLPLQLIFLGLSIGCITYFICLSLP
VGYSHWDSLLSNQLAANAVLIATAALIGLLYYFMGEAKQKRAFLEAKKSL
EVKMVIEEQSAEQERLLLSVLPKHVAIKMREDLGSSSSEAFKKIYMSRHE
NVRNINNCALRFLAIATTVLAVPLMSVQITPSCVCTWDSPW*

LD27878.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15486-PA 1177 GF15486-PA 8..337 4..327 1207 77 Plus
Dana\GF10525-PA 1632 GF10525-PA 340..521 121..302 215 30.3 Plus
Dana\GF21594-PA 2285 GF21594-PA 192..329 167..302 210 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21341-PA 1167 GG21341-PA 1..327 1..327 1473 89.9 Plus
Dere\GG19448-PA 2224 GG19448-PA 137..274 167..302 207 36 Plus
Dere\GG15877-PA 1270 GG15877-PA 72..151 224..302 187 42.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10783-PA 1173 GH10783-PA 7..336 3..327 1225 75.8 Plus
Dgri\GH12957-PA 749 GH12957-PA 137..274 167..302 212 35.7 Plus
Dgri\GH12212-PA 2191 GH12212-PA 137..274 167..302 210 33.6 Plus
Dgri\GH15584-PA 1341 GH15584-PA 32..229 121..302 198 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-PC 341 CG1506-PC 1..341 1..341 1748 100 Plus
Ac3-PA 1167 CG1506-PA 1..327 1..327 1549 94.2 Plus
CG43373-PB 1240 CG42513-PB 547..730 121..302 225 32.3 Plus
CG43373-PC 1854 CG42513-PA 547..730 121..302 225 32.3 Plus
rut-PE 1391 CG9533-PE 137..274 167..302 207 36 Plus
rut-PF 1507 CG9533-PF 137..274 167..302 207 36 Plus
rut-PB 2055 CG9533-PB 137..274 167..302 207 36 Plus
rut-PC 2146 CG9533-PC 137..274 167..302 207 36 Plus
rut-PD 2171 CG9533-PD 137..274 167..302 207 36 Plus
rut-PG 2171 CG9533-PG 137..274 167..302 207 36 Plus
rut-PA 2248 CG9533-PA 137..274 167..302 207 36 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17441-PA 1170 GI17441-PA 7..333 3..327 1140 75.8 Plus
Dmoj\GI16861-PA 1685 GI16861-PA 381..564 121..302 207 30.5 Plus
Dmoj\GI15743-PA 2231 GI15743-PA 137..274 167..302 205 33.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25795-PA 1194 GL25795-PA 11..345 4..327 1240 74 Plus
Dper\GL20407-PA 2229 GL20407-PA 82..219 167..302 208 36 Plus
Dper\GL17987-PA 999 GL17987-PA 13..90 226..302 182 42.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13464-PA 1194 GA13464-PA 11..345 4..327 1236 73.7 Plus
Dpse\GA28358-PA 1718 GA28358-PA 402..584 121..302 218 32.1 Plus
Dpse\GA29217-PA 1554 GA29217-PA 137..274 167..302 210 36 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16140-PA 1165 GM16140-PA 1..327 1..327 1477 91.4 Plus
Dsec\GM24393-PA 1888 GM24393-PA 585..768 121..302 220 32.3 Plus
Dsec\GM12038-PA 2216 GM12038-PA 137..274 167..302 207 36 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24328-PA 761 GD24328-PA 1..327 1..327 1499 92.7 Plus
Dsim\GD12464-PA 1854 GD12464-PA 551..734 121..302 220 32.3 Plus
Dsim\rut-PA 2207 GD15838-PA 137..274 167..302 208 36 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14219-PA 1168 GJ14219-PA 10..336 3..327 1184 74.3 Plus
Dvir\GJ12611-PA 1843 GJ12611-PA 561..750 121..302 216 30.8 Plus
Dvir\GJ18604-PA 2222 GJ18604-PA 137..274 167..302 209 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24141-PA 1182 GK24141-PA 11..344 4..327 1188 72.8 Plus
Dwil\GK18424-PA 2214 GK18424-PA 138..275 167..302 214 36.7 Plus
Dwil\GK17483-PA 1770 GK17483-PA 435..628 121..302 213 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12923-PA 1167 GE12923-PA 1..327 1..327 1467 89 Plus
Dyak\GE22216-PA 1659 GE22216-PA 357..540 121..302 221 32.3 Plus
Dyak\GE16101-PA 2235 GE16101-PA 137..274 167..302 207 36 Plus

LD27878.hyp Sequence

Translation from 122 to 1147

> LD27878.hyp
MEANLENGQKTIASTSKSHSQRQTTSRRRQNDSDVAGGVGITGGGVVILP
QHVLNELYHNYSIKQRRSGLKWFVFAAALFNIWTIGIPWDQSAPTRVINC
CMLLAYLALTALLHIGRRSDKPALRRFHQILLIIVPRALWLLSILHFTVY
VILQPSFSPRDLLGWAILLNFLVYVTLPLQLIFLGLSIGCITYFICLSLP
VGYSHWDSLLSNQLAANAVLIATAALIGLLYYFMGEAKQKRAFLEAKKSL
EVKMVIEEQSAEQERLLLSVLPKHVAIKMREDLGSSSSEAFKKIYMSRHE
NVRNINNCALRFLAIATTVLAVPLMSVQITPSCVCTWDSPW*

LD27878.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-PC 341 CG1506-PC 1..341 1..341 1748 100 Plus
Ac3-PA 1167 CG1506-PA 1..327 1..327 1549 94.2 Plus
CG43373-PB 1240 CG42513-PB 547..730 121..302 225 32.3 Plus
CG43373-PC 1854 CG42513-PA 547..730 121..302 225 32.3 Plus
rut-PE 1391 CG9533-PE 137..274 167..302 207 36 Plus