Clone LD27895 Report

Search the DGRC for LD27895

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:278
Well:95
Vector:pOT2
Associated Gene/TranscriptTrf2-RH
Protein status:LD27895.pep: gold
Preliminary Size:4675
Sequenced Size:4548

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18009 2001-11-29 Blastp of sequenced clone
CG18009 2003-01-01 Sim4 clustering to Release 3
Trf2 2008-04-29 Release 5.5 accounting
Trf2 2008-08-15 Release 5.9 accounting
Trf2 2008-12-18 5.12 accounting

Clone Sequence Records

LD27895.complete Sequence

4548 bp (4548 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069554

> LD27895.complete
AAAGCGACCAAAGCCAACAGGAGTCGTCAGAGGAAATTACAGACGAACAG
AAGGAAGAAAGCGACGACGTCGAACAACAGTCGCCGGCTGAACATACTTC
TTCTGATAGACGCGATCATTCGCCAGACAAGCAACAGAATAAGCGAAAAT
CGTTAGGCACTGGGAATTCTTCGTATTCGAAGAAACCATTATTGGACGGT
GACAAAGGAGACCCACGTTCACATTTATCGTCTCTGGGAAGTCGCAGATC
CTTAAAGCGTAAATGGCCTTTTGATTGTACAGACTCTAAGAAATTTAAAC
CAAACTTGCAGAGTGAGGAAGACAAATCTGAGGAGGAAAAACGTGAAGAT
ACGGAAAGCGAATGCTCTGACGAAGAAGACTCAGATAGTTCAAGTTTCGA
TACAGATTCAAATTCAGATTCAGATTCAAATTTAGATTTAGATTCCGATT
CCGATTCCCATTCCGATTTCGAATCATCTTCAAGTTCTGAGGAATCTGCC
CAGGATCCAGCTCCTGAAGGCGAAACCGATCAAGATCCAGCTCCTTATTA
CGACGATCAGGATCCAGCTTCTTATTACGACGATCACATTTGTGATTCTG
AGGAGGATTATAAACCATTTATCTTCTCAAAGGAAAGGAAGTTCTTGAAA
TTCGTAACAAATCCTTTAGGGGATGATAAATCTAGTTTGGACCTTAGCAT
ACAGCTCTATAAGGTATTTGGAGCTTACAAACTGGAAGACGTATACAGCA
GTATTGATGAGGAAGGCCAACCAGAACAGGACCTGCAACTGAAGCAGCAA
CAGAAACATTTAAAAAAATATCAAAAGTTGCAACTGGTGGTATTCTGGCA
CCAGGAGAAATTCTTTTCAAAGGAGCAACTGTTGCTATATGAGTATCTGA
AACTACTTTTGCAGAAATTCTTTCCACAAGAGCAACAGGAGAAACGGTTG
CAACAGGAGAAACTTTTGCAACAGGAGAAACTCTTGCAACAGGAGAAACG
GTTGCAACAGGAGAAACGGTTGCAACAGGAGAAACGGTTGCAACAGGAGA
AACGGTTGCAACAGGAGAAACGGTTGCAACAGCAGAAACTCTTGCAACAG
CAGAAACTCTTGCAACAGGAGAAACTCTTGCAACAGCAGAAACTCTTGCA
ACAGGAGAAACTCTTGCAACAGGAGAAACTCTTGCAACAGGAGAAACAAT
TGCAACAGGAGAAACACTTGCCACAGGAGCGACAGTTGCAACAGGATAAA
GTCTTCCTACAGCTACGACAGTTGCAACAGAAGAAAGAACTGGAGGAGCA
GCGAGAGCGAAAGCGCCACCTCTTTGAGCAACAGAAACAGTTTGTCCTAG
AAAAATTGCGCCAACAGAAGGAGCAGCATCGTCGTCAGCAAAATCGCGTA
AAACGCGAACGTAAATTGCGCCAGAAAAAGGAGAAACAGCGCTTGGAATA
CGAACGATTCTTGAAGGAATATAGGGAGGACTGTAAACGTCAGTTGCGTT
TGCAGCGCGAGCATTATCTGATCAAGATTAAGCAGCTGGAGAAGGCCAGT
CAGCGCTCGTTGAAGGGGAATCGAAAGCACAAGCTGATGCAAAACGATAT
GGTCAGCATACCGGTGGCCAATTTGAACGGCGGCCTTAAAGCGGCCAGCA
GCGGTTCCGGAGTTGGTGTAGTGACCTCCGGCGGCGTCGTATCCTCGGCG
GTGCTGGCCAATGCCCCACGTGTATACCTAACGCCCTCCTCCACATTCAT
GACCAATCGCCAAATGGCGGGAGTGGCGTCCACCGGAAGAATGAGCGGAC
AAGTCGTCGGTGGTTCATCTGGCACAGCCTCAACAGCCGGTACCGTTCGC
TATTTTTCGCAATTCAGCAAAATGCAAACGGCCGGCGGACCCAGTTTGCA
AAGGAAACTTGCCAACGGGGATACCATTGTTCTGGCAACCGGCAGTAAAA
ATATGTTCCTTACTAGCAGCGAAAATAAGGCTAATCTGCCGACCGTCGCC
AGCAATGGCAATGGTCTGATCACAGCCAAAATGGATCTATTGGAGGAGGA
GGTCATGCAGTCGATAACTGTGATTGATGACGATGACGAGGAGAAAAAGG
AAGTCGCTGAAGACGAAGAAGAGAGCAGCAATAATGCCAAACCCATTGAC
CTTCACCAGCCAATTGCTGATAATGAGCACGAGCTGGACATTGTGATAAA
CAATGTGGTCTGCTCGTTTAGCGTCGGCTGTCACCTGAAGCTGCGCGAAA
TTGCGCTGCAGGGATCAAATGTGGAGTACCGTCGCGAGAACGGAATGGTG
ACAATGAAGCTCCGCCATCCATACACCACTGCCTCGATTTGGTCGTCGGG
GAGGATTACCTGCACTGGTGCCACTTCCGAGTCAATGGCCAAGGTCGCTG
CACGCCGCTATGCCAGATGCCTTGGCAAGCTGGGATTTCCCACTCGTTTC
CTCAACTTTCGCATTGTCAACGTACTGGGCACCTGCAGCATGCCGTGGGC
CATCAAGATCGTCAACTTTTCGGAGCGCCATCGCGAGAACGCCAGCTACG
AGCCCGAGCTGCATCCTGGAGTGACTTACAAGATGCGCGATCCCGATCCA
AAGGCCACCCTGAAGATCTTCTCCACCGGCAGCGTAACAGTCACCGCGGC
TAGCGTAAACCACGTTGAATCGGCTATCCAGCACATATACCCGCTGGTCT
TTGATTTCCGCAAGCAACGTTCGGCGGAGGAGCTGCAGCATCTGCGTCAA
AAGCAGCGTCTGCAAGCCGGCGGTGATCCCCACGAACTGGAGAAAAATGT
CTTGGCCGATAACAAGACTGCTTCCCTTGATAATATCTTTGTTAATACAA
CAGCGGCGCACTCTAAATCATCGTCGAATGACCAAACATCAGCACCCGCG
ACCATCTTGTCCAGCACAGTTGATAGTATGCCTCGTCTGAAACAGATGGT
CAACTATCACCAGATGATGAAGCAAACCCAGGAAGAGCGCCGCCATATAA
TGTTTAATGGGGAGAAGGCCAATCCGGCCTCCACCTCATCGGCGGCAGCA
GCTCCCTCCACCTCCTCCTCATCGTCCTCATCCGGGGATAATATCTGTGC
CAATGCCCGTCGCCGGGCCACCGAATGCTGGGCAACCAAGCTGCAGAATA
AGCGTCCACGTTACAATGATCCCGGTACCACGGGCACAATTAACGCCGCA
TCGTCCACAGCATCAGCCGCCACATCTTCGTTAGCCTCCCAGGCGACACA
TCTGCGTAATCCTCTCAAGACGGCCGCGTTGGCCAATGCACGTATGTTAG
GCGCCAAGGTGACAACATGCACACGCAACAGCATAATCGTGCAGCAGCCG
CAACGTATCCAAATGCAGCAGCAGCAGCAACAGCTGCAACCGCAGCAGCA
ACAGACCAGCTTCTCGCCCAGCGAATTCGATGTTGATGACTTGATCGAGG
AGGAGGAGAACAACGAATTGGATATGCCCTTCTAAGCTAGCGCTGCCCGT
GCCAAAAAAAAATTTCAACTAAAATGGTTCAAATCGATGATGAAACACTA
CAACACTAAACACGCCACACTCACAAATAGCCACGAGCTTCTTTTCGAAT
TTGTTGGTTATTCGTTCAAGTCATTTTTCATCACATTTATTTTCGTGTGC
TTGCCGCATTTAAACTAAACTCGAGAAAGCCTGGACACCGAAGCGAAAAG
CACCCACAGCGAAGCAACAACAACAAACAACAAACAAAACACCGCAGCAA
CAACAAAATCAAGAGCCAAATATTTAAAATATAAGATTTACGTTTAAACT
ACTTTGTAAGTTAAGCGAGCACACCAGAAACAAACAAGCAGAGATAGCGA
ATAGATGATTTCGATCCCGAAGTATCCCAGAAACCTCAATAACATCTAGA
TGGTAAGCAAGGGAGCTTACCACACGGTAAACATAAGTTTAGACTTAAAG
AAAATACGTATGCGACAGCGTTTTACGTATATAACCGAAATCTGTGGATA
GCCTGGATGAGTCACCATCAATCATCGCAATTGCAATCAATTGTGGTGAA
AGTAAGAGAACACACATGTAGAACTAATCACCAGGACAGGAAGAGGACGA
TACGAGCAAGGTGCCCAGGCGGATCGGATCTCGCAGCTTCCTATCTTATT
TTAAATTTTTTTTTGAAGCTGAACTCCAATTCAGTTCTGGCCAAGCAAAC
TACAATTCTCAAGTAAAAATCCGTGGAGAGGAGGTGGGGCCAGAGAAAAG
CCCACTAGGATAGTTATCAATTATCTGAAGAACAACTGATTAATTTCTTG
TATATTCATAGGAAATTTTTTTTGTTTTCGCTATAAGTCCTACATAATAA
ATGCTATACATAAGTGCTGCGTGTGGGCGCATAACAAACGAAACGAAATG
CGTTTGAATGCGATTATAATATTAATATTATTATGCATATATACAACACA
CACAAATACCTATATCTGGTCACTTCTAACCAATTATAAACAAAACTGGA
AAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD27895.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-RF 7122 Trf2-RF 3072..7055 527..4510 19890 99.9 Plus
Trf2.a 7127 Trf2.a 3077..7060 527..4510 19890 99.9 Plus
Trf2.c 7298 Trf2.c 3148..7131 527..4510 19890 99.9 Plus
Trf2-RF 7122 Trf2-RF 2309..2853 1..545 2725 100 Plus
Trf2.a 7127 Trf2.a 2314..2858 1..545 2725 100 Plus
Trf2.c 7298 Trf2.c 2385..2929 1..545 2725 100 Plus
Trf2-RF 7122 Trf2-RF 3022..3104 504..586 310 91.5 Plus
Trf2.a 7127 Trf2.a 3027..3109 504..586 310 91.5 Plus
Trf2.c 7298 Trf2.c 3098..3180 504..586 310 91.5 Plus
Trf2-RF 7122 Trf2-RF 2842..2883 504..545 195 97.6 Plus
Trf2.a 7127 Trf2.a 2847..2888 504..545 195 97.6 Plus
Trf2.c 7298 Trf2.c 2918..2959 504..545 195 97.6 Plus
Trf2-RF 7122 Trf2-RF 2962..3003 504..545 180 95.2 Plus
Trf2-RF 7122 Trf2-RF 2932..2973 504..545 180 95.2 Plus
Trf2.a 7127 Trf2.a 2967..3008 504..545 180 95.2 Plus
Trf2.a 7127 Trf2.a 2937..2978 504..545 180 95.2 Plus
Trf2.c 7298 Trf2.c 3008..3049 504..545 180 95.2 Plus
Trf2.c 7298 Trf2.c 3038..3079 504..545 180 95.2 Plus
Trf2-RF 7122 Trf2-RF 2902..2943 504..545 165 92.8 Plus
Trf2-RF 7122 Trf2-RF 2872..2913 504..545 165 92.8 Plus
Trf2.a 7127 Trf2.a 2907..2948 504..545 165 92.8 Plus
Trf2.a 7127 Trf2.a 2877..2918 504..545 165 92.8 Plus
Trf2.c 7298 Trf2.c 2978..3019 504..545 165 92.8 Plus
Trf2.c 7298 Trf2.c 2948..2989 504..545 165 92.8 Plus
Trf2-RF 7122 Trf2-RF 2992..3033 504..545 150 90.4 Plus
Trf2.a 7127 Trf2.a 2997..3038 504..545 150 90.4 Plus
Trf2.c 7298 Trf2.c 3068..3109 504..545 150 90.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8317777..8319638 527..2388 9265 99.8 Plus
chrX 22417052 chrX 8320026..8321165 2646..3785 5685 99.9 Plus
chrX 22417052 chrX 8321224..8321956 3784..4505 3415 98.4 Plus
chrX 22417052 chrX 8317014..8317555 1..542 2695 99.8 Plus
chrX 22417052 chrX 8319696..8319955 2387..2646 1300 100 Plus
chrX 22417052 chrX 8318182..8318501 968..1287 1135 90.3 Plus
chrX 22417052 chrX 8318218..8318537 932..1251 1135 90.3 Plus
chrX 22417052 chrX 8318182..8318446 986..1250 980 91.3 Plus
chrX 22417052 chrX 8318236..8318500 932..1196 980 91.3 Plus
chrX 22417052 chrX 8318182..8318464 1004..1286 860 86.9 Plus
chrX 22417052 chrX 8318254..8318536 932..1214 860 86.9 Plus
chrX 22417052 chrX 8318182..8318422 1022..1262 725 86.7 Plus
chrX 22417052 chrX 8318272..8318512 932..1172 725 86.7 Plus
chrX 22417052 chrX 8318290..8318512 932..1154 665 86.5 Plus
chrX 22417052 chrX 8318182..8318404 1040..1262 665 86.5 Plus
chrX 22417052 chrX 8318182..8318410 1058..1286 650 85.6 Plus
chrX 22417052 chrX 8318308..8318536 932..1160 650 85.6 Plus
chrX 22417052 chrX 8318182..8318374 1094..1286 530 85 Plus
chrX 22417052 chrX 8318182..8318368 1076..1262 530 85.6 Plus
chrX 22417052 chrX 8318326..8318512 932..1118 530 85.6 Plus
chrX 22417052 chrX 8318344..8318536 932..1124 530 85 Plus
chrX 22417052 chrX 8318182..8318320 1112..1250 470 89.2 Plus
chrX 22417052 chrX 8318362..8318500 932..1070 470 89.2 Plus
chrX 22417052 chrX 8318182..8318302 1130..1250 410 89.3 Plus
chrX 22417052 chrX 8318380..8318500 932..1052 410 89.3 Plus
chrX 22417052 chrX 8318182..8318284 1148..1250 335 88.3 Plus
chrX 22417052 chrX 8318398..8318500 932..1034 335 88.3 Plus
chrX 22417052 chrX 8317727..8317809 504..586 310 91.6 Plus
chrX 22417052 chrX 8318416..8318500 932..1016 275 88.2 Plus
chrX 22417052 chrX 8318182..8318266 1166..1250 275 88.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8426027..8427888 527..2388 9295 99.9 Plus
X 23542271 X 8428276..8429415 2646..3785 5700 100 Plus
X 23542271 X 8429474..8430200 3784..4510 3620 99.9 Plus
X 23542271 X 8425264..8425808 1..545 2725 100 Plus
X 23542271 X 8427946..8428205 2387..2646 1300 100 Plus
X 23542271 X 8426432..8426751 968..1287 1135 90.3 Plus
X 23542271 X 8426468..8426787 932..1251 1135 90.3 Plus
X 23542271 X 8426432..8426696 986..1250 980 91.3 Plus
X 23542271 X 8426486..8426750 932..1196 980 91.3 Plus
X 23542271 X 8426432..8426714 1004..1286 860 86.9 Plus
X 23542271 X 8426504..8426786 932..1214 860 86.9 Plus
X 23542271 X 8426432..8426672 1022..1262 725 86.7 Plus
X 23542271 X 8426522..8426762 932..1172 725 86.7 Plus
X 23542271 X 8426540..8426762 932..1154 665 86.5 Plus
X 23542271 X 8426432..8426654 1040..1262 665 86.5 Plus
X 23542271 X 8426432..8426660 1058..1286 650 85.6 Plus
X 23542271 X 8426558..8426786 932..1160 650 85.6 Plus
X 23542271 X 8426576..8426762 932..1118 530 85.6 Plus
X 23542271 X 8426432..8426624 1094..1286 530 85 Plus
X 23542271 X 8426432..8426618 1076..1262 530 85.6 Plus
X 23542271 X 8426594..8426786 932..1124 530 85 Plus
X 23542271 X 8426432..8426570 1112..1250 470 89.2 Plus
X 23542271 X 8426612..8426750 932..1070 470 89.2 Plus
X 23542271 X 8426432..8426552 1130..1250 410 89.3 Plus
X 23542271 X 8426630..8426750 932..1052 410 89.3 Plus
X 23542271 X 8426432..8426534 1148..1250 335 88.3 Plus
X 23542271 X 8426648..8426750 932..1034 335 88.3 Plus
X 23542271 X 8425977..8426059 504..586 310 91.6 Plus
X 23542271 X 8426432..8426516 1166..1250 275 88.2 Plus
X 23542271 X 8426666..8426750 932..1016 275 88.2 Plus
X 23542271 X 8425797..8425838 504..545 195 97.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8434125..8435986 527..2388 9295 99.9 Plus
X 23527363 X 8436374..8437513 2646..3785 5700 100 Plus
X 23527363 X 8437572..8438298 3784..4510 3620 99.8 Plus
X 23527363 X 8433362..8433906 1..545 2725 100 Plus
X 23527363 X 8436044..8436303 2387..2646 1300 100 Plus
X 23527363 X 8434075..8434157 504..586 310 91.5 Plus
X 23527363 X 8433895..8433936 504..545 195 97.6 Plus
X 23527363 X 8434015..8434056 504..545 180 95.2 Plus
X 23527363 X 8433985..8434026 504..545 180 95.2 Plus
X 23527363 X 8433955..8433996 504..545 165 92.8 Plus
X 23527363 X 8433925..8433966 504..545 165 92.8 Plus
X 23527363 X 8434045..8434086 504..545 150 90.4 Plus
Blast to na_te.dros performed 2019-03-16 10:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..3021 768..1467 290 52.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2981 775..1457 247 51.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..7110 768..1171 182 52.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..3004 770..1015 167 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..7053 760..1102 152 52.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..7015 745..1028 149 51.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6856 768..836 129 65.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 5451..5561 4396..4503 124 64.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3280..3323 781..824 121 75 Plus

LD27895.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:38:02 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8317014..8317546 1..533 99 -> Plus
chrX 8317784..8319637 534..2387 99 -> Plus
chrX 8319697..8319955 2388..2646 100 -> Plus
chrX 8320027..8321165 2647..3785 99 -> Plus
chrX 8321226..8321956 3786..4505 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:28 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 1427..1923 1..497 100 -> Plus
Trf2-RE 2006..2040 498..523 71 -> Plus
Trf2-RE 2188..5148 524..3485 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:37 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 1427..1923 1..497 100 -> Plus
Trf2-RE 2006..2040 498..523 71 -> Plus
Trf2-RE 2188..5148 524..3485 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:16:42 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RG 1427..1923 1..497 100 -> Plus
Trf2-RG 2006..2040 498..523 71 -> Plus
Trf2-RG 2188..5148 524..3485 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:54 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 1427..1923 1..497 100 -> Plus
Trf2-RE 2006..2040 498..523 71 -> Plus
Trf2-RE 2188..5148 524..3485 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:28 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RG 1427..1923 1..497 100 -> Plus
Trf2-RG 2006..2040 498..523 71 -> Plus
Trf2-RG 2188..5148 524..3485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:01:37 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 1427..1930 1..504 100 -> Plus
Trf2-RE 2021..2040 505..523 95 -> Plus
Trf2-RE 2188..6168 524..4505 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:37 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 2385..2888 1..504 100 -> Plus
Trf2-RE 2979..2998 505..523 95 -> Plus
Trf2-RE 3146..7126 524..4505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:16:42 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 2309..2812 1..504 100 -> Plus
Trf2-RF 2903..2922 505..523 95 -> Plus
Trf2-RF 3070..7050 524..4505 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:55 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 1427..1930 1..504 100 -> Plus
Trf2-RE 2021..2040 505..523 95 -> Plus
Trf2-RE 2188..6168 524..4505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:28 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 2309..2812 1..504 100 -> Plus
Trf2-RF 2903..2922 505..523 95 -> Plus
Trf2-RF 3070..7050 524..4505 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:38:02 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
X 8427947..8428205 2388..2646 100 -> Plus
X 8425264..8425767 1..504 100 -> Plus
X 8425858..8425877 505..523 95 -> Plus
X 8426025..8427887 524..2387 99 -> Plus
X 8428277..8429415 2647..3785 100 -> Plus
X 8429476..8430195 3786..4505 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:38:02 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
X 8427947..8428205 2388..2646 100 -> Plus
X 8425264..8425767 1..504 100 -> Plus
X 8425858..8425877 505..523 95 -> Plus
X 8426025..8427887 524..2387 99 -> Plus
X 8428277..8429415 2647..3785 100 -> Plus
X 8429476..8430195 3786..4505 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:38:02 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
X 8427947..8428205 2388..2646 100 -> Plus
X 8425264..8425767 1..504 100 -> Plus
X 8425858..8425877 505..523 95 -> Plus
X 8426025..8427887 524..2387 99 -> Plus
X 8428277..8429415 2647..3785 100 -> Plus
X 8429476..8430195 3786..4505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:16:42 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8319297..8319800 1..504 100 -> Plus
arm_X 8319891..8319910 505..523 95 -> Plus
arm_X 8320058..8321920 524..2387 99 -> Plus
arm_X 8321980..8322238 2388..2646 100 -> Plus
arm_X 8322310..8323448 2647..3785 100 -> Plus
arm_X 8323509..8324228 3786..4505 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:59 Download gff for LD27895.complete
Subject Subject Range Query Range Percent Splice Strand
X 8433956..8433975 505..523 95 -> Plus
X 8433362..8433865 1..504 100 -> Plus
X 8434123..8435985 524..2387 99 -> Plus
X 8436045..8436303 2388..2646 100 -> Plus
X 8436375..8437513 2647..3785 100 -> Plus
X 8437574..8438293 3786..4505 100   Plus

LD27895.hyp Sequence

Translation from 2 to 3484

> LD27895.hyp
SDQSQQESSEEITDEQKEESDDVEQQSPAEHTSSDRRDHSPDKQQNKRKS
LGTGNSSYSKKPLLDGDKGDPRSHLSSLGSRRSLKRKWPFDCTDSKKFKP
NLQSEEDKSEEEKREDTESECSDEEDSDSSSFDTDSNSDSDSNLDLDSDS
DSHSDFESSSSSEESAQDPAPEGGNDQDPAPYYDDQDPASYYDDHICDSE
EDYKPFIFSKERKFLKFVTNPLGDDKSSLDLSIQLYKVFGAYKLEDVYSS
IDEEGQPEQDLQLKQQQKHLKKYQKLQLVVFWHQEKFFSKEQLLLYEYLK
LLLQKFFPQEQQEKRLQQEKLLQQEKLLQQEKRLQQEKRLQQEKRLQQEK
RLQQEKRLQQQKLLQQQKLLQQEKLLQQQKLLQQEKLLQQEKLLQQEKQL
QQEKHLPQERQLQQDKVFLQLRQLQQKKELEEQRERKRHLFEQQKQFVLE
KLRQQKEQHRRQQNRVKRERKLRQKKEKQRLEYERFLKEYREDCKRQLRL
QREHYLIKIKQLEKASQRSLKGNRKHKLMQNDMVSIPVANLNGGLKAASS
GSGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTNRQMAGVASTGRMSGQ
VVGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSKN
MFLTSSENKANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKE
VAEDEEESSNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLKLREI
ALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAA
RRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE
PELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNHVESAIQHIYPLVF
DFRKQRSAEELQHLRQKQRLQAGGDPHELEKNVLADNKTASLDNIFVNTT
AAHSKSSSNDQTSAPATILSSTVDSMPRLKQMVNYHQMMKQTQEERRHIM
FNGEKANPASTSSAAAAPSTSSSSSSSGDNICANARRRATECWATKLQNK
RPRYNDPGTTGTINAASSTASAATSSLASQATHLRNPLKTAALANARMLG
AKVTTCTRNSIIVQQPQRIQMQQQQQQLQPQQQQTSFSPSEFDVDDLIEE
EENNELDMPF*

LD27895.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-PE 1715 CG18009-PE 477..1715 1..1160 5711 92.3 Plus
Trf2-PF 1715 CG18009-PF 477..1715 1..1160 5711 92.3 Plus
Trf2-PG 1715 CG18009-PG 477..1715 1..1160 5711 92.3 Plus
Trf2-PI 1714 CG18009-PI 476..1714 1..1160 5711 92.3 Plus
Trf2-PJ 632 CG18009-PJ 1..632 529..1160 3204 100 Plus

LD27895.pep Sequence

Translation from 1586 to 3484

> LD27895.pep
MQNDMVSIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTP
SSTFMTNRQMAGVASTGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAG
GPSLQRKLANGDTIVLATGSKNMFLTSSENKANLPTVASNGNGLITAKMD
LLEEEVMQSITVIDDDDEEKKEVAEDEEESSNNAKPIDLHQPIADNEHEL
DIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTAS
IWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTC
SMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSV
TVTAASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHE
LEKNVLADNKTASLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPR
LKQMVNYHQMMKQTQEERRHIMFNGEKANPASTSSAAAAPSTSSSSSSSG
DNICANARRRATECWATKLQNKRPRYNDPGTTGTINAASSTASAATSSLA
SQATHLRNPLKTAALANARMLGAKVTTCTRNSIIVQQPQRIQMQQQQQQL
QPQQQQTSFSPSEFDVDDLIEEEENNELDMPF*

LD27895.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21727-PA 1683 GF21727-PA 1037..1683 1..632 1552 55.5 Plus
Dana\GF11627-PA 348 GF11627-PA 174..347 204..377 389 41.5 Plus
Dana\GF14757-PA 224 GF14757-PA 35..223 185..376 341 37.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18249-PA 641 GG18249-PA 1..641 1..632 2390 80.1 Plus
Dere\GG20753-PA 349 GG20753-PA 175..348 204..377 388 41.5 Plus
Dere\GG10512-PA 224 GG10512-PA 1..223 157..376 357 35.1 Plus
Dere\GG24500-PA 251 GG24500-PA 34..215 193..375 150 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11849-PA 689 GH11849-PA 1..563 1..544 1375 53.1 Plus
Dgri\GH10255-PA 314 GH10255-PA 21..198 199..378 756 76.1 Plus
Dgri\GH23121-PA 348 GH23121-PA 174..347 204..377 387 41.5 Plus
Dgri\GH11614-PA 220 GH11614-PA 31..219 185..376 338 36.9 Plus
Dgri\GH10255-PA 314 GH10255-PA 227..299 480..558 156 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-PJ 632 CG18009-PJ 1..632 1..632 3204 100 Plus
Trf2-PE 1715 CG18009-PE 1084..1715 1..632 3204 100 Plus
Trf2-PF 1715 CG18009-PF 1084..1715 1..632 3204 100 Plus
Trf2-PH 632 CG18009-PH 1..632 1..632 3204 100 Plus
Trf2-PG 1715 CG18009-PG 1084..1715 1..632 3204 100 Plus
Trf2-PI 1714 CG18009-PI 1083..1714 1..632 3204 100 Plus
Tbp-PA 353 CG9874-PA 179..352 204..377 350 41.5 Plus
Trf-PA 224 CG7562-PA 1..223 157..376 331 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14331-PA 656 GI14331-PA 1..552 5..538 1323 51.4 Plus
Dmoj\GI15474-PA 442 GI15474-PA 88..398 199..539 945 56.6 Plus
Dmoj\GI18943-PA 348 GI18943-PA 174..347 204..377 384 41.5 Plus
Dmoj\GI17918-PA 220 GI17918-PA 31..219 185..376 342 35.9 Plus
Dmoj\GI22955-PA 315 GI22955-PA 101..278 197..375 194 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16412-PA 987 GL16412-PA 355..852 83..551 1278 54.3 Plus
Dper\GL23716-PA 640 GL23716-PA 233..563 196..528 889 54.4 Plus
Dper\GL11271-PA 345 GL11271-PA 171..344 204..377 389 41.5 Plus
Dper\GL24756-PA 220 GL24756-PA 31..219 185..376 338 37.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14764-PA 1037 GA14764-PA 407..881 83..529 1267 55.7 Plus
Dpse\GA26713-PA 642 GA26713-PA 233..563 196..528 843 52.6 Plus
Dpse\GA22088-PA 345 GA22088-PA 171..344 204..377 389 41.5 Plus
Dpse\GA20441-PA 220 GA20441-PA 31..219 185..376 338 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21561-PA 278 GM21561-PA 6..190 211..395 1023 98.9 Plus
Dsec\GM21550-PA 1302 GM21550-PA 1110..1302 1..194 838 92.8 Plus
Dsec\GM15696-PA 352 GM15696-PA 178..351 204..377 388 41.5 Plus
Dsec\GM16720-PA 224 GM16720-PA 1..223 157..376 352 34.2 Plus
Dsec\GM21561-PA 278 GM21561-PA 204..278 555..632 252 85.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25175-PA 352 GD25175-PA 178..351 204..377 388 41.5 Plus
Dsim\GD23502-PA 224 GD23502-PA 1..223 157..376 353 34.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19385-PA 711 GJ19385-PA 1..612 5..547 1435 52.4 Plus
Dvir\GJ17285-PA 387 GJ17285-PA 49..223 199..375 847 86.4 Plus
Dvir\GJ14917-PA 352 GJ14917-PA 178..351 204..377 387 41.5 Plus
Dvir\Tbp-PA 351 GJ21317-PA 177..350 204..377 387 41.5 Plus
Dvir\GJ17690-PA 220 GJ17690-PA 31..219 185..376 340 36.4 Plus
Dvir\GJ17285-PA 387 GJ17285-PA 285..331 490..536 174 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16294-PA 1222 GK16294-PA 508..1075 1..548 1486 56.7 Plus
Dwil\GK10649-PA 351 GK10649-PA 177..350 204..377 385 40.9 Plus
Dwil\GK15318-PA 226 GK15318-PA 46..225 195..376 340 37.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15780-PA 1872 GE15780-PA 1230..1872 1..632 2419 79.3 Plus
Dyak\GE13685-PA 349 GE13685-PA 175..348 204..377 387 41.5 Plus
Dyak\GE18732-PA 224 GE18732-PA 1..223 157..376 358 35.1 Plus