BDGP Sequence Production Resources |
Search the DGRC for LD27920
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 279 |
Well: | 20 |
Vector: | pOT2 |
Associated Gene/Transcript | CG4806-RA |
Protein status: | LD27920.pep: gold |
Sequenced Size: | 2095 |
Gene | Date | Evidence |
---|---|---|
CG4806 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4806 | 2008-04-29 | Release 5.5 accounting |
CG4806 | 2008-08-15 | Release 5.9 accounting |
CG4806 | 2008-12-18 | 5.12 accounting |
2095 bp (2095 high quality bases) assembled on 2005-08-09
GenBank Submission: BT023833
> LD27920.complete TTAGTTCTCATCAAGAGTTCCACGTGCAAATGGAACTTAAAAAAATGAAA TCTTTAAAAGACGACGCTGCCGAATCCCAATCTCAGCCAGAAACCGGGGT CCGGAAGCGCCGCAACCCCTTTAACACACAGAGGCTGAAGGAAGAGAAGG AGCGCCGCCAGAAAAAGCGAGCGCGTCTCATCGTGCGCAACATCAGTTAC AAGTCCACGGAGGACTCGCTTCGCGAGCATTTCGGGCAGTGGGGCACGCT GGAGGATGTACACATCCTGAAACGAGGTGACGGGAAGCTGGTGGGCTGCG CCTTTGTCCAGTACGAGACCATTAACCAGGCCACCAAAGCGATCCTGAAC TCCAACGGCAAAGAGCTGCTCGGGAGAAAGGTATTTGTGGACTGGGCTTT GGGCAAGGACGAGTATGTATCAAAGAACCCGAAAGACGAGGAGCCGGATG AGAAGAAGCCAAAGGTGGAAGTGAAAGAGGAAAACGGTGACGAGAAGGAA GTTAAGGAGGAAAGCGACGCGGAAGTTGGCAAGGAAGATGAAAGTTCTGG GGAGGATTCTGATGCGGAATCCGGCGAAGATGAAGAGGACTCTGGAGAAT CTGAAGACGAAGAGAACGACGAAGATCATAAGGAGAACAAGGACGAATTA AAATCAAAATTGGATATCAAAAATGTCAAAAGGGAAAAGCAAATCTCCAA CGACGTCCAGGAGGGCTGCACGGTCTTCATTAAAAACGTTCCCTTCGATG CAGAGGATGCCGACTTGAGAAAGGCGTGCCGCAAATTCGGCTTGGTCAGC TACGCCATTATTAATCGCCAGGCGGTTTCTGGCCACTCCAAGGGTACAGC CTTCGTTAAATTCAAAGCCAAGGAGTCAGCGGATCTTTGTCTGCAAGCTG GAACAGAGTTTAAGTTGATGGACGAGGTCCTGGATCCTCATCCCGCATTG AGCCGCGAGGAAATGAAGTCGAAGCAGTCGCAGGAAAACAAAAAAGACGA TGCCAAGGACTCACGAAACCTGTATTTGGCCAGGGAAGGTCTAATCATGG CTGGAGCGAAGGCAGCCGATGGGGTTTCTGCCTCAGACATGGCCAAGCGA CATGAACTTGAGCAGGTTAAGACGCAGGTGCTCAAGAACTTGAATCGGTT TGTTTCCCGGAATCGCTTGTCCATTCACAATCTCCCCCAAAACTATGACA ATGAAAAGCTGAAACAAATGGCTCTGACTTATACTGGCTTCCGACCCCAC GAATGCCGGGTGATGAGGGAACATAAGGTGACCCCTGAGCATCCACAGGG CAAGTCCAAGGGCTTTGGTTTCCTATCCTTCGACACGCATCAGAGAGCTT TGGCCGCCCTACGGAAACTAAACAACAACCCCAATATCTTCGGAACACAG AGTCGCCCCATTGTCGCGTTCAGTATAGAGGATCGTGCTGTGCACAAAAT CAAAGAAAAGCGCACGGAGCGCTCAAAGCAGAACAATCCCACATACCAAA ACAAACAGCAGGAGCGCAAGGAGCGACGCCAGCAAAAGCGCAATGGTCAG GAGACCAAAACTCCAGTTCCCCAAGCAGATAATAAAAGCAAACTTCAGAA ACACATTAAGAAACTTGAAGCTTCGCGAGCAGCGAAAGCCGAAGGTAAAG TCGCGGAGAAAAAGCAGTTGAGCGATGTTCAGGGCGATTTTGTCGGCACG GCCGCCAAGCCGGGCACCTCGCTGAAGATGCGATCCAAAAAGAAGATTGT AGAGCAGGCCAAGGAACACTTGAAGAAGGTGAAAACCGAAAAGCGCAAGC AGAAGAACAAGAAGATACGCGAGTCCCACCTGGCAGAGCGCAAGGCAAAT AATCGGCCCAAGCAAGGACGCAAGAAGGAAACGGATGACCTTCGGCCCCT AATTAATAAGTACAAGAACATGATTAGTGGAAACCAAGGAGGTGGCGGCG TTACGGGAGGTAAAATCAAGAAGCCTAAGCGTACCAAGTGGTACACGGAG TAGCGCTCCCTCTTCTAGGATAAGAAAAATCTTTTTAGCAATAAAACTGT AAATGAGAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4806-RA | 2221 | CG4806-RA | 50..2110 | 1..2061 | 10305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20553074..20554222 | 1149..1 | 5745 | 100 | Minus |
chr2R | 21145070 | chr2R | 20552046..20552703 | 2061..1404 | 3290 | 100 | Minus |
chr2R | 21145070 | chr2R | 20552761..20553017 | 1403..1147 | 1285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24667182..24668330 | 1149..1 | 5745 | 100 | Minus |
2R | 25286936 | 2R | 24666154..24666811 | 2061..1404 | 3290 | 100 | Minus |
2R | 25286936 | 2R | 24666869..24667125 | 1403..1147 | 1285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24668381..24669529 | 1149..1 | 5745 | 100 | Minus |
2R | 25260384 | 2R | 24667353..24668010 | 2061..1404 | 3290 | 100 | Minus |
2R | 25260384 | 2R | 24668068..24668324 | 1403..1147 | 1285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 599..667 | 448..515 | 153 | 71 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 286..354 | 448..515 | 135 | 70 | Plus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 596..677 | 687..603 | 120 | 63.5 | Minus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 249..365 | 1496..1616 | 118 | 61.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20552050..20552703 | 1404..2057 | 100 | <- | Minus |
chr2R | 20552761..20553016 | 1148..1403 | 100 | <- | Minus |
chr2R | 20553076..20554222 | 1..1147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..1974 | 30..2003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..1974 | 30..2003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..1974 | 30..2003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..1974 | 30..2003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..1974 | 30..2003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..2057 | 1..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..2057 | 1..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 14..2070 | 1..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 1..2057 | 1..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4806-RA | 14..2070 | 1..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24666158..24666811 | 1404..2057 | 100 | <- | Minus |
2R | 24666869..24667124 | 1148..1403 | 100 | <- | Minus |
2R | 24667184..24668330 | 1..1147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24666158..24666811 | 1404..2057 | 100 | <- | Minus |
2R | 24666869..24667124 | 1148..1403 | 100 | <- | Minus |
2R | 24667184..24668330 | 1..1147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24666158..24666811 | 1404..2057 | 100 | <- | Minus |
2R | 24666869..24667124 | 1148..1403 | 100 | <- | Minus |
2R | 24667184..24668330 | 1..1147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20553681..20554334 | 1404..2057 | 100 | <- | Minus |
arm_2R | 20554392..20554647 | 1148..1403 | 100 | <- | Minus |
arm_2R | 20554707..20555853 | 1..1147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24667375..24668028 | 1404..2057 | 100 | <- | Minus |
2R | 24668086..24668341 | 1148..1403 | 100 | <- | Minus |
2R | 24668401..24669547 | 1..1147 | 100 | Minus |
Translation from 2 to 2002
> LD27920.hyp SSHQEFHVQMELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKE RRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCA FVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDE KKPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGES EDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDA EDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAG TEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMA GAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDN EKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRAL AALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQN KQQERKERRQQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKV AEKKQLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQ KNKKIRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGV TGGKIKKPKRTKWYTE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4806-PA | 657 | CG4806-PA | 1..657 | 10..666 | 3381 | 100 | Plus |
Translation from 29 to 2002
> LD27920.pep MELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQKKRARL IVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQ ATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKE ENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDH KENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKAC RKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEV LDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVS ASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALT YTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNN PNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQERKERR QQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQLSDV QGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQKNKKIRESH LAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGKIKKPK RTKWYTE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11912-PA | 664 | GF11912-PA | 1..664 | 1..657 | 2677 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19902-PA | 655 | GG19902-PA | 1..655 | 1..657 | 3340 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21568-PA | 665 | GH21568-PA | 1..665 | 6..657 | 2498 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4806-PA | 657 | CG4806-PA | 1..657 | 1..657 | 3381 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19540-PA | 669 | GI19540-PA | 225..669 | 215..657 | 2008 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11105-PA | 658 | GL11105-PA | 1..658 | 6..657 | 2513 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18446-PA | 658 | GA18446-PA | 1..658 | 6..657 | 2518 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11803-PA | 652 | GM11803-PA | 1..652 | 6..657 | 3386 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24928-PA | 652 | GD24928-PA | 1..652 | 6..657 | 3393 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21111-PA | 670 | GJ21111-PA | 1..670 | 1..657 | 2571 | 77.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21872-PA | 650 | GK21872-PA | 1..648 | 1..655 | 2412 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11426-PA | 655 | GE11426-PA | 1..655 | 1..657 | 2894 | 94.7 | Plus |