Clone LD27920 Report

Search the DGRC for LD27920

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:279
Well:20
Vector:pOT2
Associated Gene/TranscriptCG4806-RA
Protein status:LD27920.pep: gold
Sequenced Size:2095

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4806 2003-01-01 Sim4 clustering to Release 3
CG4806 2008-04-29 Release 5.5 accounting
CG4806 2008-08-15 Release 5.9 accounting
CG4806 2008-12-18 5.12 accounting

Clone Sequence Records

LD27920.complete Sequence

2095 bp (2095 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023833

> LD27920.complete
TTAGTTCTCATCAAGAGTTCCACGTGCAAATGGAACTTAAAAAAATGAAA
TCTTTAAAAGACGACGCTGCCGAATCCCAATCTCAGCCAGAAACCGGGGT
CCGGAAGCGCCGCAACCCCTTTAACACACAGAGGCTGAAGGAAGAGAAGG
AGCGCCGCCAGAAAAAGCGAGCGCGTCTCATCGTGCGCAACATCAGTTAC
AAGTCCACGGAGGACTCGCTTCGCGAGCATTTCGGGCAGTGGGGCACGCT
GGAGGATGTACACATCCTGAAACGAGGTGACGGGAAGCTGGTGGGCTGCG
CCTTTGTCCAGTACGAGACCATTAACCAGGCCACCAAAGCGATCCTGAAC
TCCAACGGCAAAGAGCTGCTCGGGAGAAAGGTATTTGTGGACTGGGCTTT
GGGCAAGGACGAGTATGTATCAAAGAACCCGAAAGACGAGGAGCCGGATG
AGAAGAAGCCAAAGGTGGAAGTGAAAGAGGAAAACGGTGACGAGAAGGAA
GTTAAGGAGGAAAGCGACGCGGAAGTTGGCAAGGAAGATGAAAGTTCTGG
GGAGGATTCTGATGCGGAATCCGGCGAAGATGAAGAGGACTCTGGAGAAT
CTGAAGACGAAGAGAACGACGAAGATCATAAGGAGAACAAGGACGAATTA
AAATCAAAATTGGATATCAAAAATGTCAAAAGGGAAAAGCAAATCTCCAA
CGACGTCCAGGAGGGCTGCACGGTCTTCATTAAAAACGTTCCCTTCGATG
CAGAGGATGCCGACTTGAGAAAGGCGTGCCGCAAATTCGGCTTGGTCAGC
TACGCCATTATTAATCGCCAGGCGGTTTCTGGCCACTCCAAGGGTACAGC
CTTCGTTAAATTCAAAGCCAAGGAGTCAGCGGATCTTTGTCTGCAAGCTG
GAACAGAGTTTAAGTTGATGGACGAGGTCCTGGATCCTCATCCCGCATTG
AGCCGCGAGGAAATGAAGTCGAAGCAGTCGCAGGAAAACAAAAAAGACGA
TGCCAAGGACTCACGAAACCTGTATTTGGCCAGGGAAGGTCTAATCATGG
CTGGAGCGAAGGCAGCCGATGGGGTTTCTGCCTCAGACATGGCCAAGCGA
CATGAACTTGAGCAGGTTAAGACGCAGGTGCTCAAGAACTTGAATCGGTT
TGTTTCCCGGAATCGCTTGTCCATTCACAATCTCCCCCAAAACTATGACA
ATGAAAAGCTGAAACAAATGGCTCTGACTTATACTGGCTTCCGACCCCAC
GAATGCCGGGTGATGAGGGAACATAAGGTGACCCCTGAGCATCCACAGGG
CAAGTCCAAGGGCTTTGGTTTCCTATCCTTCGACACGCATCAGAGAGCTT
TGGCCGCCCTACGGAAACTAAACAACAACCCCAATATCTTCGGAACACAG
AGTCGCCCCATTGTCGCGTTCAGTATAGAGGATCGTGCTGTGCACAAAAT
CAAAGAAAAGCGCACGGAGCGCTCAAAGCAGAACAATCCCACATACCAAA
ACAAACAGCAGGAGCGCAAGGAGCGACGCCAGCAAAAGCGCAATGGTCAG
GAGACCAAAACTCCAGTTCCCCAAGCAGATAATAAAAGCAAACTTCAGAA
ACACATTAAGAAACTTGAAGCTTCGCGAGCAGCGAAAGCCGAAGGTAAAG
TCGCGGAGAAAAAGCAGTTGAGCGATGTTCAGGGCGATTTTGTCGGCACG
GCCGCCAAGCCGGGCACCTCGCTGAAGATGCGATCCAAAAAGAAGATTGT
AGAGCAGGCCAAGGAACACTTGAAGAAGGTGAAAACCGAAAAGCGCAAGC
AGAAGAACAAGAAGATACGCGAGTCCCACCTGGCAGAGCGCAAGGCAAAT
AATCGGCCCAAGCAAGGACGCAAGAAGGAAACGGATGACCTTCGGCCCCT
AATTAATAAGTACAAGAACATGATTAGTGGAAACCAAGGAGGTGGCGGCG
TTACGGGAGGTAAAATCAAGAAGCCTAAGCGTACCAAGTGGTACACGGAG
TAGCGCTCCCTCTTCTAGGATAAGAAAAATCTTTTTAGCAATAAAACTGT
AAATGAGAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA

LD27920.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4806-RA 2221 CG4806-RA 50..2110 1..2061 10305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20553074..20554222 1149..1 5745 100 Minus
chr2R 21145070 chr2R 20552046..20552703 2061..1404 3290 100 Minus
chr2R 21145070 chr2R 20552761..20553017 1403..1147 1285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24667182..24668330 1149..1 5745 100 Minus
2R 25286936 2R 24666154..24666811 2061..1404 3290 100 Minus
2R 25286936 2R 24666869..24667125 1403..1147 1285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24668381..24669529 1149..1 5745 100 Minus
2R 25260384 2R 24667353..24668010 2061..1404 3290 100 Minus
2R 25260384 2R 24668068..24668324 1403..1147 1285 100 Minus
Blast to na_te.dros performed 2019-03-15 22:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 599..667 448..515 153 71 Plus
TAHRE 10463 TAHRE OSV 10463bp 286..354 448..515 135 70 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 596..677 687..603 120 63.5 Minus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 249..365 1496..1616 118 61.3 Plus

LD27920.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:32 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20552050..20552703 1404..2057 100 <- Minus
chr2R 20552761..20553016 1148..1403 100 <- Minus
chr2R 20553076..20554222 1..1147 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:30 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 30..2003 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:14 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 30..2003 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:18 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 30..2003 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:54 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 30..2003 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:11 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 30..2003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:26 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..2057 1..2057 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:14 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..2057 1..2057 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:18 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 14..2070 1..2057 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:54 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..2057 1..2057 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:11 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 14..2070 1..2057 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:32 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24666158..24666811 1404..2057 100 <- Minus
2R 24666869..24667124 1148..1403 100 <- Minus
2R 24667184..24668330 1..1147 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:32 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24666158..24666811 1404..2057 100 <- Minus
2R 24666869..24667124 1148..1403 100 <- Minus
2R 24667184..24668330 1..1147 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:32 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24666158..24666811 1404..2057 100 <- Minus
2R 24666869..24667124 1148..1403 100 <- Minus
2R 24667184..24668330 1..1147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:18 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20553681..20554334 1404..2057 100 <- Minus
arm_2R 20554392..20554647 1148..1403 100 <- Minus
arm_2R 20554707..20555853 1..1147 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:29 Download gff for LD27920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24667375..24668028 1404..2057 100 <- Minus
2R 24668086..24668341 1148..1403 100 <- Minus
2R 24668401..24669547 1..1147 100   Minus

LD27920.hyp Sequence

Translation from 2 to 2002

> LD27920.hyp
SSHQEFHVQMELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKE
RRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCA
FVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDE
KKPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGES
EDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDA
EDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAG
TEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMA
GAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDN
EKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRAL
AALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQN
KQQERKERRQQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKV
AEKKQLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQ
KNKKIRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGV
TGGKIKKPKRTKWYTE*

LD27920.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4806-PA 657 CG4806-PA 1..657 10..666 3381 100 Plus

LD27920.pep Sequence

Translation from 29 to 2002

> LD27920.pep
MELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQKKRARL
IVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQ
ATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKE
ENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDH
KENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKAC
RKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEV
LDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVS
ASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALT
YTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNN
PNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQERKERR
QQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQLSDV
QGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQKNKKIRESH
LAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGKIKKPK
RTKWYTE*

LD27920.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11912-PA 664 GF11912-PA 1..664 1..657 2677 83.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19902-PA 655 GG19902-PA 1..655 1..657 3340 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21568-PA 665 GH21568-PA 1..665 6..657 2498 75.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4806-PA 657 CG4806-PA 1..657 1..657 3381 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19540-PA 669 GI19540-PA 225..669 215..657 2008 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11105-PA 658 GL11105-PA 1..658 6..657 2513 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18446-PA 658 GA18446-PA 1..658 6..657 2518 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11803-PA 652 GM11803-PA 1..652 6..657 3386 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24928-PA 652 GD24928-PA 1..652 6..657 3393 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21111-PA 670 GJ21111-PA 1..670 1..657 2571 77.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21872-PA 650 GK21872-PA 1..648 1..655 2412 73.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11426-PA 655 GE11426-PA 1..655 1..657 2894 94.7 Plus