BDGP Sequence Production Resources |
Search the DGRC for LD27967
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 279 |
Well: | 67 |
Vector: | pOT2 |
Associated Gene/Transcript | Vti1-RA |
Protein status: | LD27967.pep: gold |
Preliminary Size: | 1420 |
Sequenced Size: | 1322 |
Gene | Date | Evidence |
---|---|---|
CG3279 | 2001-01-01 | Release 2 assignment |
CG3279 | 2001-09-19 | Blastp of sequenced clone |
CG3279 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3279 | 2008-04-29 | Release 5.5 accounting |
CG3279 | 2008-08-15 | Release 5.9 accounting |
CG3279 | 2008-12-18 | 5.12 accounting |
1322 bp (1322 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058584
> LD27967.complete GTAATTTTCGCGAACTAAAACAGAACAAATACCATAAACAACTGAATAAG GTAGAATAAAAACCGCACAAATGTCGCTTCTGGAGCAATACGAACAGCAA TACGCCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCA GCAAAACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCA GTTTGCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGG GAGCTAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGC CCAGGCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACA AACAGCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGC TATGAGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAA CTCGGAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAG TGGCCTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCAC CACCAAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAA TGCCGAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAG CCCTGCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTG GCCGTGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCAC CGCCTCGTCGTAGTAATTTTAGCTAGCAAACCAATAGCCAATGATCTTAG CCCAAATTCAAATGTTATAGAAGCCTGTCCATTCCAATTTCGTGAGTTGA TTATTTATTGTTTAGTATATTTTATTTTTACGAGATATTCTGTGGAAGAA AGCTGCAGATTACGCACTAATCTATATAAGATAGGATGGAGTATTACGTG CAATAAGAGTCGAAGCTTAGAGTAGTTATCTGCGGTCAATCGATGTCTAT ATATTTTGTTGTCCTTTTACCTTTAAGATTAAATTGACCTTCTTGTTAAT CGATGGAATTCCTATTACTTTTTAATTCTTACCGCAGATTTCTAACCTAT CACTCGCGTATCCGCCATCCTAGCTTACGTGTACAAAGTTTAAGTGGTTA ATGTTTGGCGCCTGGTTAATAGAAACTAATCCTACTCTATGACTCGTGTT CGCGTTCGGGACGTATTTTTCGTAAAAATTCGAATTGAACATGTACGTAT CTAAAAATCATAACATAGCCGAAAGCTATCAATAAATAAAGGAAACAGTA AAAAAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 691299..692433 | 165..1299 | 99 | <- | Minus |
chr3L | 692498..692661 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3279-RA | 1..693 | 71..763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vti1-RA | 1..693 | 71..763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vti1-RA | 1..693 | 71..763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3279-RA | 1..693 | 71..763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vti1-RA | 1..693 | 71..763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3279-RA | 68..1366 | 1..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vti1-RA | 68..1366 | 1..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vti1-RA | 72..1370 | 1..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3279-RA | 68..1366 | 1..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vti1-RA | 72..1370 | 1..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 691486..692620 | 165..1299 | 100 | <- | Minus |
3L | 692685..692848 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 691486..692620 | 165..1299 | 100 | <- | Minus |
3L | 692685..692848 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 691486..692620 | 165..1299 | 100 | <- | Minus |
3L | 692685..692848 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 691486..692620 | 165..1299 | 100 | <- | Minus |
arm_3L | 692685..692848 | 1..164 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 692685..692848 | 1..164 | 100 | Minus | |
3L | 691486..692620 | 165..1299 | 100 | <- | Minus |
Translation from 70 to 762
> LD27967.pep MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV LYGVGVCFVVAVGVSLYLTFAPSSSSTASS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24073-PA | 230 | GF24073-PA | 1..229 | 1..229 | 1118 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14644-PA | 230 | GG14644-PA | 1..230 | 1..230 | 1169 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16038-PA | 230 | GH16038-PA | 1..230 | 1..229 | 1001 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vti1a-PA | 230 | CG3279-PA | 1..230 | 1..230 | 1137 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12301-PA | 230 | GI12301-PA | 1..230 | 1..229 | 991 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20836-PA | 244 | GL20836-PA | 1..244 | 1..229 | 952 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17139-PA | 230 | GA17139-PA | 1..230 | 1..229 | 1009 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14259-PA | 230 | GM14259-PA | 1..230 | 1..230 | 1165 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13516-PA | 230 | GD13516-PA | 1..230 | 1..230 | 1184 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13238-PA | 230 | GJ13238-PA | 1..230 | 1..229 | 1009 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16681-PA | 234 | GK16681-PA | 1..234 | 1..228 | 983 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21004-PA | 230 | GE21004-PA | 1..230 | 1..230 | 1168 | 97 | Plus |
Translation from 70 to 762
> LD27967.hyp MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV LYGVGVCFVVAVGVSLYLTFAPSSSSTASS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vti1-PA | 230 | CG3279-PA | 1..230 | 1..230 | 1137 | 100 | Plus |