Clone LD27967 Report

Search the DGRC for LD27967

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:279
Well:67
Vector:pOT2
Associated Gene/TranscriptVti1-RA
Protein status:LD27967.pep: gold
Preliminary Size:1420
Sequenced Size:1322

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3279 2001-01-01 Release 2 assignment
CG3279 2001-09-19 Blastp of sequenced clone
CG3279 2003-01-01 Sim4 clustering to Release 3
CG3279 2008-04-29 Release 5.5 accounting
CG3279 2008-08-15 Release 5.9 accounting
CG3279 2008-12-18 5.12 accounting

Clone Sequence Records

LD27967.complete Sequence

1322 bp (1322 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058584

> LD27967.complete
GTAATTTTCGCGAACTAAAACAGAACAAATACCATAAACAACTGAATAAG
GTAGAATAAAAACCGCACAAATGTCGCTTCTGGAGCAATACGAACAGCAA
TACGCCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCA
GCAAAACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCA
GTTTGCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGG
GAGCTAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGC
CCAGGCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACA
AACAGCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGC
TATGAGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAA
CTCGGAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAG
TGGCCTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCAC
CACCAAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAA
TGCCGAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAG
CCCTGCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTG
GCCGTGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCAC
CGCCTCGTCGTAGTAATTTTAGCTAGCAAACCAATAGCCAATGATCTTAG
CCCAAATTCAAATGTTATAGAAGCCTGTCCATTCCAATTTCGTGAGTTGA
TTATTTATTGTTTAGTATATTTTATTTTTACGAGATATTCTGTGGAAGAA
AGCTGCAGATTACGCACTAATCTATATAAGATAGGATGGAGTATTACGTG
CAATAAGAGTCGAAGCTTAGAGTAGTTATCTGCGGTCAATCGATGTCTAT
ATATTTTGTTGTCCTTTTACCTTTAAGATTAAATTGACCTTCTTGTTAAT
CGATGGAATTCCTATTACTTTTTAATTCTTACCGCAGATTTCTAACCTAT
CACTCGCGTATCCGCCATCCTAGCTTACGTGTACAAAGTTTAAGTGGTTA
ATGTTTGGCGCCTGGTTAATAGAAACTAATCCTACTCTATGACTCGTGTT
CGCGTTCGGGACGTATTTTTCGTAAAAATTCGAATTGAACATGTACGTAT
CTAAAAATCATAACATAGCCGAAAGCTATCAATAAATAAAGGAAACAGTA
AAAAAAAAAAAAAAAAAAAAAA

LD27967.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1475 Vti1-RA 172..1475 1..1304 6520 100 Plus
RabX6.a 1256 RabX6.a 784..1256 1304..832 2365 100 Minus
RabX6-RA 1377 RabX6-RA 905..1377 1304..832 2365 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 691299..692433 1299..165 5630 99.7 Minus
chr3L 24539361 chr3L 692483..692661 179..1 835 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 691481..692620 1304..165 5700 100 Minus
3L 28110227 3L 692670..692848 179..1 835 97.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 691481..692620 1304..165 5700 100 Minus
3L 28103327 3L 692670..692848 179..1 835 97.7 Minus
Blast to na_te.dros performed on 2019-03-15 22:25:41 has no hits.

LD27967.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:33 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 691299..692433 165..1299 99 <- Minus
chr3L 692498..692661 1..164 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:31 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 1..693 71..763 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:24 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 1..693 71..763 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:21 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 1..693 71..763 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:56 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 1..693 71..763 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:14 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 1..693 71..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:42 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 68..1366 1..1299 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:24 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 68..1366 1..1299 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:21 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 72..1370 1..1299 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:56 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 68..1366 1..1299 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:14 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 72..1370 1..1299 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:33 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 691486..692620 165..1299 100 <- Minus
3L 692685..692848 1..164 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:33 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 691486..692620 165..1299 100 <- Minus
3L 692685..692848 1..164 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:33 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 691486..692620 165..1299 100 <- Minus
3L 692685..692848 1..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:21 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 691486..692620 165..1299 100 <- Minus
arm_3L 692685..692848 1..164 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:38 Download gff for LD27967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 692685..692848 1..164 100   Minus
3L 691486..692620 165..1299 100 <- Minus

LD27967.pep Sequence

Translation from 70 to 762

> LD27967.pep
MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE
LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN
TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ
LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV
LYGVGVCFVVAVGVSLYLTFAPSSSSTASS*

LD27967.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24073-PA 230 GF24073-PA 1..229 1..229 1118 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14644-PA 230 GG14644-PA 1..230 1..230 1169 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16038-PA 230 GH16038-PA 1..230 1..229 1001 85.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1a-PA 230 CG3279-PA 1..230 1..230 1137 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12301-PA 230 GI12301-PA 1..230 1..229 991 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20836-PA 244 GL20836-PA 1..244 1..229 952 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17139-PA 230 GA17139-PA 1..230 1..229 1009 85.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14259-PA 230 GM14259-PA 1..230 1..230 1165 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13516-PA 230 GD13516-PA 1..230 1..230 1184 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13238-PA 230 GJ13238-PA 1..230 1..229 1009 86.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16681-PA 234 GK16681-PA 1..234 1..228 983 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21004-PA 230 GE21004-PA 1..230 1..230 1168 97 Plus

LD27967.hyp Sequence

Translation from 70 to 762

> LD27967.hyp
MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE
LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN
TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ
LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV
LYGVGVCFVVAVGVSLYLTFAPSSSSTASS*

LD27967.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-PA 230 CG3279-PA 1..230 1..230 1137 100 Plus