BDGP Sequence Production Resources |
Search the DGRC for LD28027
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 280 |
Well: | 27 |
Vector: | pOT2 |
Associated Gene/Transcript | Snm1-RA |
Protein status: | LD28027.pep: gold |
Preliminary Size: | 2512 |
Sequenced Size: | 2583 |
Gene | Date | Evidence |
---|---|---|
CG10018 | 2001-01-01 | Release 2 assignment |
CG10018 | 2001-09-19 | Blastp of sequenced clone |
CG10018 | 2003-01-01 | Sim4 clustering to Release 3 |
Snm1 | 2008-04-29 | Release 5.5 accounting |
Snm1 | 2008-08-15 | Release 5.9 accounting |
Snm1 | 2008-12-18 | 5.12 accounting |
2583 bp (2583 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058585
> LD28027.complete CCTATTTGTTATATGTAAACAGGATGTCCAATGTAGGGAAAATAAAGATA AGATCCATTGCGGATCTGCAGGCCACAGTACGAGTAAATGTAGAACCGGA CCCAACGCCCACGATCGAGAACAGAACGCCGGACAAGAAAAGAGCGGGAA GAACTCGTGCGGCTTCCACGACAAAAAAGGTCCGACCAAAGACGGAAGCA TGTCCAATCATAGCCAGCACTGCGTTCAAGCGTTCCAGCAAGAAGACTCC GCTGCCAGGACAAATGCGCATCGATAGCTTTTTTACAAGTGCCGTCAAGA ACTACAAAGTCAAGTCAAGTTCCTCTTGCAGGAAGGTGGATCCTCCGTTG GACAAGCGAAAGGTATCTACCAAAGGGCGCAAGCGCCTCTTCGAGGAGTC TACAACAACCTCATCTGCCTTTACGGGCAAGCTGGATGCAAAGCCGTCAG AGAAGCGAGTGCAGCCTAGTCGCCGTGCGAAAGGCAAGGAGAACGCTAGC CTCTCCGAAGTGCACGTAATTGACCTGTGCTCCGAGGACGAGCAGACCAT AAAAAGAAAGCCATCCGCGATAGCCTCTCCCTGTGAAAAAAGCAGCGATG TCCAAGCAACCAAGTTTAGAACTCCAGAGACTTCCATGCCAGAAGCCAAG CTAAGCAATTCCAGCCTAGACCTAGTGGAAATCTCCCCCGGTCCCAACAA ATCCCCAACGAATAACTTTTACCGGTCATCGCCGGCTGCAATCACAAAGG AAAGCCCCCTGGGCAAAAACTCTAAAAAAGGAACTGTACGCAAACAAAGA AAACCAAAGCCTTGTCCGCCCTATAAAGTAGTGGAGGGTACATCCTTCTG CGTCGACGGCTTTCAGTTTGGGGAAATAGAGGGAGTCACACATTACTTTC TCACGCACTTTCATGCGGATCACTACATCGGCCTGACTAAAAAGTTCTGC CATCCCCTCTACGTGAGTCCTATTTCAGCGCGCTTGGTGCGAACGTTTAT TAAACTCGATGAAACGCACATTCACGAAATTGATGTGGACCAGACCCTGG ACGTAGATGGCGTCCAAGTAACCGCCTTAGAAGCTAACCACTGTCCTGGA GCACTCATGTTCTTCTTCAAACTGAGCTCTGGCGAATGCATACTGCACAC CGGGGACTTCCGAGCTAGCGCGGACATGGAATCCCTACCAATCTTCTGGA ACCATTCAAACATCGACCTGCTTTATCTGGACACAACGTATATGAACAAA AACTACGACTTCTGCCACCAAAGCGAGAGCGTTGACCGAGCGGTGGATCT GGTGCGCGCCTTCCTAGAGAAAAATGCAGCCAAACGAATCCTTATCGTCT GCGGCTCCTACGTGATAGGAAAGGAGAAGATATGGTTGGCCTTAGCGAAG GAGTTCACAATGAGGGTTTGGACGGAAAGCAATCGCAGCACTGCAGTAAG ATGCCTGAATTGGCCGGATCTAGACTCCGTGCTAACAGAAGATCGCAGCG GAGCAAACTTGCACGTCATTGCAATGGGAAAAATCAGCTATCCGAGCCTA GTCGATTACTTTACTGAATTCGAGGACCAATATGACATGTTGCTGGGCAT AAGGCCCAGCGGTTGGGAAAAGAACTCAAAGCCTTCGTACGGCAAGCGAA TTAGCACGATCGGCATTGAGTACTCAGAACACTCCAGCTACAAGGAGTTG GAGCGCTTTGTTCGCTTCCTCAAGCCAAAGCGAGTCATAAGCACCGTTCC CGTGGGCCGCGATCTCTATGTCACTGGAGAGGTGCCCATACGGTGGTACA AGTACGAAGGTCGGGCATCTATGCTGCGTACTGGGTTTCAGCCTTCGATA TCCACTTTCCTAGCTACGCCGAAGCGAGCTTTTGCAAAATTCAGTGCAGA TACTGAAATGTTCTTGAGCCCCGTGGATGAGAATGCTTCCAAAGGGAGTG AAGATAAGAAAGACGATGACCGGGAGTCCGTGGTGCCAACGAATCATGTA ACTATTATATCCGACACTCCGGAAGAGTGTTTTCAAACTGATTCCAAGAT ACCAGTTAAAAACGAGCCTCTGGCACCGGACACGTCACCGAATTCTGAAA TAGTTGCACAACTCAATGCGATGGAATCCGAAATTCCATATGTTGAAATA GACATTAAAAACGAAACTATCGCACCTGATGCAGTCCTCATACCTCGTGT CCCAACGGAAGATACATTTCAAAGTACGGATTGCAATGTTATTGGTGTCC AGAAAAGCCAGGCAGTCGTGGTTAGTAGACTGACATCCGATGCATCAGAC GATTGGCTCCTGTAGTGATTAAATTTCGGATAAAAAAGTCCTTTGGATTT AAGTATGGCTGCTAGTAGTTTTAAGATATTTTGTTATGAAATAATAAGGT ATATACATACTTATGTTCGAAAAGGGCTTTAGTTTCTGTTAAACTTTTAT AATGTTTTAATATCTTTTATATAAGGCTTGCCTTTTAAATACTTTACATA TGTATTTTGGTTGATATATATATATATTCCCACACTATTTAGTTGCGAAC CGTACATAATGAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snm1-RA | 2790 | Snm1-RA | 156..2723 | 1..2568 | 12825 | 99.9 | Plus |
Pi4KIIalpha.d | 3394 | Pi4KIIalpha.d | 3197..3394 | 2568..2371 | 975 | 99.4 | Minus |
Pi4KIIalpha-RC | 3394 | Pi4KIIalpha-RC | 3197..3394 | 2568..2371 | 975 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1380771..1381860 | 1..1090 | 5450 | 100 | Plus |
chr3R | 27901430 | chr3R | 1382428..1383445 | 1544..2561 | 5090 | 100 | Plus |
chr3R | 27901430 | chr3R | 1381918..1382371 | 1091..1544 | 2270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5555112..5556201 | 1..1090 | 5450 | 100 | Plus |
3R | 32079331 | 3R | 5556769..5557793 | 1544..2568 | 5110 | 99.9 | Plus |
3R | 32079331 | 3R | 5556259..5556712 | 1091..1544 | 2270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5295943..5297032 | 1..1090 | 5450 | 100 | Plus |
3R | 31820162 | 3R | 5297600..5298624 | 1544..2568 | 5110 | 99.9 | Plus |
3R | 31820162 | 3R | 5297090..5297543 | 1091..1544 | 2270 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1380771..1381860 | 1..1090 | 100 | -> | Plus |
chr3R | 1381918..1382371 | 1091..1544 | 100 | -> | Plus |
chr3R | 1382429..1383445 | 1545..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 1..2292 | 24..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 1..2292 | 24..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 1..2292 | 24..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 1..2292 | 24..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 1..2292 | 24..2315 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 23..2583 | 1..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 23..2583 | 1..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 29..2589 | 1..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 23..2583 | 1..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snm1-RA | 29..2589 | 1..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5555112..5556201 | 1..1090 | 100 | -> | Plus |
3R | 5556259..5556712 | 1091..1544 | 100 | -> | Plus |
3R | 5556770..5557786 | 1545..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5555112..5556201 | 1..1090 | 100 | -> | Plus |
3R | 5556259..5556712 | 1091..1544 | 100 | -> | Plus |
3R | 5556770..5557786 | 1545..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5555112..5556201 | 1..1090 | 100 | -> | Plus |
3R | 5556259..5556712 | 1091..1544 | 100 | -> | Plus |
3R | 5556770..5557786 | 1545..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1380834..1381923 | 1..1090 | 100 | -> | Plus |
arm_3R | 1381981..1382434 | 1091..1544 | 100 | -> | Plus |
arm_3R | 1382492..1383508 | 1545..2561 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5295943..5297032 | 1..1090 | 100 | -> | Plus |
3R | 5297090..5297543 | 1091..1544 | 100 | -> | Plus |
3R | 5297601..5298617 | 1545..2561 | 100 | Plus |
Translation from 2 to 2314
> LD28027.hyp YLLYVNRMSNVGKIKIRSIADLQATVRVNVEPDPTPTIENRTPDKKRAGR TRAASTTKKVRPKTEACPIIASTAFKRSSKKTPLPGQMRIDSFFTSAVKN YKVKSSSSCRKVDPPLDKRKVSTKGRKRLFEESTTTSSAFTGKLDAKPSE KRVQPSRRAKGKENASLSEVHVIDLCSEDEQTIKRKPSAIASPCEKSSDV QATKFRTPETSMPEAKLSNSSLDLVEISPGPNKSPTNNFYRSSPAAITKE SPLGKNSKKGTVRKQRKPKPCPPYKVVEGTSFCVDGFQFGEIEGVTHYFL THFHADHYIGLTKKFCHPLYVSPISARLVRTFIKLDETHIHEIDVDQTLD VDGVQVTALEANHCPGALMFFFKLSSGECILHTGDFRASADMESLPIFWN HSNIDLLYLDTTYMNKNYDFCHQSESVDRAVDLVRAFLEKNAAKRILIVC GSYVIGKEKIWLALAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRSG ANLHVIAMGKISYPSLVDYFTEFEDQYDMLLGIRPSGWEKNSKPSYGKRI STIGIEYSEHSSYKELERFVRFLKPKRVISTVPVGRDLYVTGEVPIRWYK YEGRASMLRTGFQPSISTFLATPKRAFAKFSADTEMFLSPVDENASKGSE DKKDDDRESVVPTNHVTIISDTPEECFQTDSKIPVKNEPLAPDTSPNSEI VAQLNAMESEIPYVEIDIKNETIAPDAVLIPRVPTEDTFQSTDCNVIGVQ KSQAVVVSRLTSDASDDWLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snm1-PA | 763 | CG10018-PA | 1..763 | 8..770 | 3962 | 100 | Plus |
Translation from 23 to 2314
> LD28027.pep MSNVGKIKIRSIADLQATVRVNVEPDPTPTIENRTPDKKRAGRTRAASTT KKVRPKTEACPIIASTAFKRSSKKTPLPGQMRIDSFFTSAVKNYKVKSSS SCRKVDPPLDKRKVSTKGRKRLFEESTTTSSAFTGKLDAKPSEKRVQPSR RAKGKENASLSEVHVIDLCSEDEQTIKRKPSAIASPCEKSSDVQATKFRT PETSMPEAKLSNSSLDLVEISPGPNKSPTNNFYRSSPAAITKESPLGKNS KKGTVRKQRKPKPCPPYKVVEGTSFCVDGFQFGEIEGVTHYFLTHFHADH YIGLTKKFCHPLYVSPISARLVRTFIKLDETHIHEIDVDQTLDVDGVQVT ALEANHCPGALMFFFKLSSGECILHTGDFRASADMESLPIFWNHSNIDLL YLDTTYMNKNYDFCHQSESVDRAVDLVRAFLEKNAAKRILIVCGSYVIGK EKIWLALAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRSGANLHVIA MGKISYPSLVDYFTEFEDQYDMLLGIRPSGWEKNSKPSYGKRISTIGIEY SEHSSYKELERFVRFLKPKRVISTVPVGRDLYVTGEVPIRWYKYEGRASM LRTGFQPSISTFLATPKRAFAKFSADTEMFLSPVDENASKGSEDKKDDDR ESVVPTNHVTIISDTPEECFQTDSKIPVKNEPLAPDTSPNSEIVAQLNAM ESEIPYVEIDIKNETIAPDAVLIPRVPTEDTFQSTDCNVIGVQKSQAVVV SRLTSDASDDWLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11594-PA | 676 | GF11594-PA | 1..665 | 1..639 | 2132 | 64.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12882-PA | 637 | GG12882-PA | 136..637 | 254..763 | 2174 | 79.1 | Plus |
Dere\GG12882-PA | 637 | GG12882-PA | 1..160 | 1..158 | 602 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22402-PA | 623 | GH22402-PA | 3..621 | 2..643 | 1650 | 52.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snm1-PA | 763 | CG10018-PA | 1..763 | 1..763 | 3962 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24489-PA | 662 | GI24489-PA | 3..623 | 2..647 | 1721 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21672-PA | 637 | GL21672-PA | 25..634 | 115..762 | 1737 | 54.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10012-PB | 787 | GA10012-PB | 332..784 | 256..762 | 1646 | 61.3 | Plus |
Dpse\GA10012-PB | 787 | GA10012-PB | 1..180 | 1..169 | 351 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10813-PA | 1332 | GM10813-PA | 926..1332 | 357..763 | 2077 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19792-PA | 768 | GD19792-PA | 1..768 | 1..763 | 3610 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24554-PA | 654 | GJ24554-PA | 3..622 | 2..649 | 1734 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13503-PA | 652 | GK13503-PA | 1..613 | 81..647 | 1587 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10135-PA | 740 | GE10135-PA | 1..740 | 1..763 | 3033 | 76 | Plus |