BDGP Sequence Production Resources |
Search the DGRC for LD28078
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 280 |
Well: | 78 |
Vector: | pOT2 |
Associated Gene/Transcript | noc-RA |
Protein status: | LD28078.pep: gold |
Preliminary Size: | 2553 |
Sequenced Size: | 2661 |
Gene | Date | Evidence |
---|---|---|
CG4491 | 2001-01-01 | Release 2 assignment |
CG4491 | 2001-12-12 | Blastp of sequenced clone |
CG4491 | 2003-01-01 | Sim4 clustering to Release 3 |
noc | 2008-04-29 | Release 5.5 accounting |
noc | 2008-08-15 | Release 5.9 accounting |
noc | 2008-12-18 | 5.12 accounting |
2661 bp (2661 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070550
> LD28078.complete CAGACGTGTTCGGAAAAACCTGAAAACCATTCGAGTGACAAGAGATATAA CCAACAAAAATAAGAAACCTCAGTCAACTGTGGTCACTGATCGAGAGTGT TTCGTTTCGAGTGAAAAAGTGAAATCAGAGCCAAAACACAAATCGCTTGG CCAGCAAATTGAAATAGTGCTACAGAGATAAATTCTCTGCTCAAAACTAC AAGTGTGTTAAATCGCCGATTTTCTTTGGATTTACCAACGTTTGCCGACG CATTTCTGTGGATTAACCTCATCGTCGCCGAAGCAAAGCTACGCATTTGT AGCCTTGTCTCGCAACTCACGTGGATTACCCTCGAGAAAACACACTAAGC AACTGATATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTACCATCGGTA ACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCAACGACGATG GACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTGCTCCCAAAT TGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGGACAAGAACA AGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCGAGTTCCTCG GGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCAGGCCAAATC GCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCGCAAGTCTGA GTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCCTACGAGACC AATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAGCTCTTCGCT GGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCATCCGCCCAGG AGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACAGATGGCGGC AAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAAGACTGTCTC CCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGCGCTCCGGCA TGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCCAAGGAAATG AGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTACAAGGCCGC CGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCCCGCCCGGAA TGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCGTTTGCCGGAGGATTC TCACACCATCACGCCGCCATGTTGGCAGTTGCCGCCAATGGAGGATATCC AGGCGGAGCTCCCGGCGGTGGACCAGCCGGACAGCCCAATCCGTACATAA GTTATCAGCGCATCAAGACACCAGCTGGCGGCGAGGCTATAGTGCCAGTC TGCAAGGATCCGTATTGCCAGGGATGTCCCTACTCGGCGCACACGCAACA AATGCTCATGGGTGCCCCCTGCCCCGCCGGATGCACCCAGTGCGAGCATC AGAAATACGGCCTGGCCATGGCCAGTGCCGCCGGACTGCCACCAGCTCAT CCATACTCGCAGGCAGCGGCCGCTGCTGCGGCAAACGCGGCGGCAGCCCG TTCGGCACCCTACGTGTGCAGTTGGGTGGTGGGCGATGCCTACTGCGGCA AGCGATTCCAGACCTCCGACGAGCTCTTCTCCCACCTGCGCACCCATACG GGCAATCTCTCCGATCCGGCGGCTGCTGCGGCGGCCTTGGCCCAATCGCA GGCTCAATCCCTGCTGGGAACCCTATTTCCGCCATCGGCTCTCCGAGCTG GCTATCCAACACCACCACTGAGTCCCATGTCAGCGGCTGCGGCAGCGGCG AGGTATCATCCATACGCCAAGCCACCACCAGGCGCCTTGGCTGGAGGACC TTCGCCCTTCGGCGCCGCTGGAGCATTCAATCCTGCCGCGGCGGCTGCGG CAGCTGCTCTGGGACCCTACTACTCGCCATACGCCATGTACGGCCAGAGG ATGGGAGCGGCTCATCAGTAAAGTGACTTCCACAAGAGTTAAATACCAAA AAAAAGGGGATTACGTTGAAGAGACAACCAGAGATATAGAATGAAACCAT TTCCAAACCCTGTTTGAGATACTTTCATGGAAAACAAAAAAGATAAAAGC ACAAAACGATTGCAAAGGCTGACACATCTCTGGCTTTTGCGCTATTCTGT GATACTAAACTGTAGTTTAAAGAGCGCTAGTTACACTTAAGTTTCGCAAA CAGAAAATAATCAACCACCTAAAGAACAGTAGTAGCCGCAAAAATAGCAG GATCACTCTCTTCTATCATCGTAAATGTCTACATTGTTAGGTAAAAAGAA GTGCAGCCAACACGAAGTTCACTCACTCTTATTTGTTCTCAAAGTTCAAC CAAAGTTTTTTAAGTCTTAGCCAGAACACATTCTACAACTTCCAATTTTG TTAATGAAGAACCCATTGCTGAGATGTTCAAACATTGTTTTAGTTTAACT TCGCTTTAAGTTCTATTAACTATTATTACGATTATCTGCAAGCATACAAC AAACCAACAATTGAAATAATGTTCTTTAAGTCAACTTATATTTAAAGTAA GTGTAATGAATATTTGTAATACCAACCAATCAGAGATAAAAAATTAAAAA AAAATAATAATAATTACGAAAAATAAAAATGAATATTTCATATAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
noc-RA | 3015 | noc-RA | 138..2782 | 1..2645 | 13225 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6740..6857 | 2522..2633 | 117 | 58.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 14490395..14492531 | 448..2584 | 97 | -> | Plus |
chr2L | 14489646..14490092 | 1..447 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 1..1614 | 358..1971 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 1..1614 | 358..1971 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 1..1614 | 358..1971 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 1..1614 | 358..1971 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 1..1614 | 358..1971 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 28..2670 | 1..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 28..2670 | 1..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 31..2673 | 1..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 28..2670 | 1..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
noc-RA | 31..2673 | 1..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14490889..14491335 | 1..447 | 100 | -> | Plus |
2L | 14491638..14493833 | 448..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14490889..14491335 | 1..447 | 100 | -> | Plus |
2L | 14491638..14493833 | 448..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14490889..14491335 | 1..447 | 100 | -> | Plus |
2L | 14491638..14493833 | 448..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 14490889..14491335 | 1..447 | 100 | -> | Plus |
arm_2L | 14491638..14493833 | 448..2643 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 14490889..14491335 | 1..447 | 100 | -> | Plus |
2L | 14491638..14493833 | 448..2643 | 100 | Plus |
Translation from 357 to 1970
> LD28078.pep MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14886-PA | 541 | GF14886-PA | 1..541 | 1..537 | 2626 | 95.4 | Plus |
Dana\GF15014-PA | 548 | GF15014-PA | 325..547 | 311..536 | 341 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25118-PA | 537 | GG25118-PA | 1..537 | 1..537 | 2713 | 98.3 | Plus |
Dere\GG24258-PA | 554 | GG24258-PA | 328..553 | 311..536 | 350 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23905-PA | 544 | GH23905-PA | 12..544 | 12..537 | 1680 | 82.6 | Plus |
Dgri\GH13513-PA | 544 | GH13513-PA | 12..544 | 12..537 | 1680 | 82.6 | Plus |
Dgri\GH13412-PA | 539 | GH13412-PA | 323..538 | 311..536 | 363 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
noc-PB | 537 | CG4491-PB | 1..537 | 1..537 | 2792 | 100 | Plus |
noc-PA | 537 | CG4491-PA | 1..537 | 1..537 | 2792 | 100 | Plus |
elB-PC | 552 | CG4220-PC | 6..551 | 15..536 | 662 | 35.5 | Plus |
elB-PD | 553 | CG4220-PD | 6..552 | 15..536 | 650 | 35.4 | Plus |
Muc91C-PB | 949 | CG7709-PB | 475..925 | 52..523 | 158 | 23.5 | Plus |
Muc91C-PA | 950 | CG7709-PA | 476..926 | 52..523 | 158 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10311-PA | 524 | GI10311-PA | 12..524 | 12..537 | 1777 | 87.5 | Plus |
Dmoj\GI17650-PA | 527 | GI17650-PA | 307..526 | 311..536 | 357 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25989-PA | 537 | GL25989-PA | 12..537 | 12..537 | 1916 | 89.5 | Plus |
Dper\GL25769-PA | 569 | GL25769-PA | 348..568 | 311..536 | 343 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18219-PA | 537 | GA18219-PA | 12..537 | 12..537 | 1916 | 89.5 | Plus |
Dpse\GA18043-PA | 573 | GA18043-PA | 352..572 | 311..536 | 344 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15623-PA | 537 | GM15623-PA | 1..537 | 1..537 | 2741 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23964-PA | 537 | GD23964-PA | 1..537 | 1..537 | 2740 | 99.3 | Plus |
Dsim\GD11969-PA | 119 | GD11969-PA | 2..118 | 401..536 | 244 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18020-PA | 524 | GJ18020-PA | 12..524 | 12..537 | 1855 | 88.2 | Plus |
Dvir\GJ18215-PA | 521 | GJ18215-PA | 1..520 | 10..536 | 422 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18287-PA | 549 | GK18287-PA | 12..549 | 12..537 | 1693 | 85.3 | Plus |
Translation from 357 to 1970
> LD28078.hyp MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
noc-PB | 537 | CG4491-PB | 1..537 | 1..537 | 2792 | 100 | Plus |
noc-PA | 537 | CG4491-PA | 1..537 | 1..537 | 2792 | 100 | Plus |
elB-PC | 552 | CG4220-PC | 6..551 | 15..536 | 662 | 35.5 | Plus |
elB-PD | 553 | CG4220-PD | 6..552 | 15..536 | 650 | 35.4 | Plus |
Muc91C-PB | 949 | CG7709-PB | 475..925 | 52..523 | 158 | 23.5 | Plus |