Clone LD28078 Report

Search the DGRC for LD28078

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:280
Well:78
Vector:pOT2
Associated Gene/Transcriptnoc-RA
Protein status:LD28078.pep: gold
Preliminary Size:2553
Sequenced Size:2661

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4491 2001-01-01 Release 2 assignment
CG4491 2001-12-12 Blastp of sequenced clone
CG4491 2003-01-01 Sim4 clustering to Release 3
noc 2008-04-29 Release 5.5 accounting
noc 2008-08-15 Release 5.9 accounting
noc 2008-12-18 5.12 accounting

Clone Sequence Records

LD28078.complete Sequence

2661 bp (2661 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070550

> LD28078.complete
CAGACGTGTTCGGAAAAACCTGAAAACCATTCGAGTGACAAGAGATATAA
CCAACAAAAATAAGAAACCTCAGTCAACTGTGGTCACTGATCGAGAGTGT
TTCGTTTCGAGTGAAAAAGTGAAATCAGAGCCAAAACACAAATCGCTTGG
CCAGCAAATTGAAATAGTGCTACAGAGATAAATTCTCTGCTCAAAACTAC
AAGTGTGTTAAATCGCCGATTTTCTTTGGATTTACCAACGTTTGCCGACG
CATTTCTGTGGATTAACCTCATCGTCGCCGAAGCAAAGCTACGCATTTGT
AGCCTTGTCTCGCAACTCACGTGGATTACCCTCGAGAAAACACACTAAGC
AACTGATATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTACCATCGGTA
ACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCAACGACGATG
GACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTGCTCCCAAAT
TGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGGACAAGAACA
AGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCGAGTTCCTCG
GGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCAGGCCAAATC
GCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCGCAAGTCTGA
GTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCCTACGAGACC
AATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAGCTCTTCGCT
GGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCATCCGCCCAGG
AGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACAGATGGCGGC
AAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAAGACTGTCTC
CCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGCGCTCCGGCA
TGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCCAAGGAAATG
AGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTACAAGGCCGC
CGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCCCGCCCGGAA
TGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCGTTTGCCGGAGGATTC
TCACACCATCACGCCGCCATGTTGGCAGTTGCCGCCAATGGAGGATATCC
AGGCGGAGCTCCCGGCGGTGGACCAGCCGGACAGCCCAATCCGTACATAA
GTTATCAGCGCATCAAGACACCAGCTGGCGGCGAGGCTATAGTGCCAGTC
TGCAAGGATCCGTATTGCCAGGGATGTCCCTACTCGGCGCACACGCAACA
AATGCTCATGGGTGCCCCCTGCCCCGCCGGATGCACCCAGTGCGAGCATC
AGAAATACGGCCTGGCCATGGCCAGTGCCGCCGGACTGCCACCAGCTCAT
CCATACTCGCAGGCAGCGGCCGCTGCTGCGGCAAACGCGGCGGCAGCCCG
TTCGGCACCCTACGTGTGCAGTTGGGTGGTGGGCGATGCCTACTGCGGCA
AGCGATTCCAGACCTCCGACGAGCTCTTCTCCCACCTGCGCACCCATACG
GGCAATCTCTCCGATCCGGCGGCTGCTGCGGCGGCCTTGGCCCAATCGCA
GGCTCAATCCCTGCTGGGAACCCTATTTCCGCCATCGGCTCTCCGAGCTG
GCTATCCAACACCACCACTGAGTCCCATGTCAGCGGCTGCGGCAGCGGCG
AGGTATCATCCATACGCCAAGCCACCACCAGGCGCCTTGGCTGGAGGACC
TTCGCCCTTCGGCGCCGCTGGAGCATTCAATCCTGCCGCGGCGGCTGCGG
CAGCTGCTCTGGGACCCTACTACTCGCCATACGCCATGTACGGCCAGAGG
ATGGGAGCGGCTCATCAGTAAAGTGACTTCCACAAGAGTTAAATACCAAA
AAAAAGGGGATTACGTTGAAGAGACAACCAGAGATATAGAATGAAACCAT
TTCCAAACCCTGTTTGAGATACTTTCATGGAAAACAAAAAAGATAAAAGC
ACAAAACGATTGCAAAGGCTGACACATCTCTGGCTTTTGCGCTATTCTGT
GATACTAAACTGTAGTTTAAAGAGCGCTAGTTACACTTAAGTTTCGCAAA
CAGAAAATAATCAACCACCTAAAGAACAGTAGTAGCCGCAAAAATAGCAG
GATCACTCTCTTCTATCATCGTAAATGTCTACATTGTTAGGTAAAAAGAA
GTGCAGCCAACACGAAGTTCACTCACTCTTATTTGTTCTCAAAGTTCAAC
CAAAGTTTTTTAAGTCTTAGCCAGAACACATTCTACAACTTCCAATTTTG
TTAATGAAGAACCCATTGCTGAGATGTTCAAACATTGTTTTAGTTTAACT
TCGCTTTAAGTTCTATTAACTATTATTACGATTATCTGCAAGCATACAAC
AAACCAACAATTGAAATAATGTTCTTTAAGTCAACTTATATTTAAAGTAA
GTGTAATGAATATTTGTAATACCAACCAATCAGAGATAAAAAATTAAAAA
AAAATAATAATAATTACGAAAAATAAAAATGAATATTTCATATAAAAAAA
AAAAAAAAAAA

LD28078.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RA 3015 noc-RA 138..2782 1..2645 13225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14490394..14492590 447..2643 10835 99.5 Plus
chr2L 23010047 chr2L 14489646..14490092 1..447 2220 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14493835 447..2645 10995 100 Plus
2L 23513712 2L 14490889..14491335 1..447 2235 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14493835 447..2645 10995 100 Plus
2L 23513712 2L 14490889..14491335 1..447 2235 100 Plus
Blast to na_te.dros performed 2019-03-16 19:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6740..6857 2522..2633 117 58.5 Plus

LD28078.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:11 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14490395..14492531 448..2584 97 -> Plus
chr2L 14489646..14490092 1..447 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:42 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 358..1971 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:23 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 358..1971 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:30 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 358..1971 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:32 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 358..1971 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:02 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 358..1971 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:23 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 28..2670 1..2643 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:23 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 28..2670 1..2643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:30 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 31..2673 1..2643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:32 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 28..2670 1..2643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:02 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 31..2673 1..2643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:11 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14490889..14491335 1..447 100 -> Plus
2L 14491638..14493833 448..2643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:11 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14490889..14491335 1..447 100 -> Plus
2L 14491638..14493833 448..2643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:11 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14490889..14491335 1..447 100 -> Plus
2L 14491638..14493833 448..2643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:30 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14490889..14491335 1..447 100 -> Plus
arm_2L 14491638..14493833 448..2643 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:47 Download gff for LD28078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14490889..14491335 1..447 100 -> Plus
2L 14491638..14493833 448..2643 100   Plus

LD28078.pep Sequence

Translation from 357 to 1970

> LD28078.pep
MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA
DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK
SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA
EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS
GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP
YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG
APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML
MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA
PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ
SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP
FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQ*

LD28078.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14886-PA 541 GF14886-PA 1..541 1..537 2626 95.4 Plus
Dana\GF15014-PA 548 GF15014-PA 325..547 311..536 341 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25118-PA 537 GG25118-PA 1..537 1..537 2713 98.3 Plus
Dere\GG24258-PA 554 GG24258-PA 328..553 311..536 350 41.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23905-PA 544 GH23905-PA 12..544 12..537 1680 82.6 Plus
Dgri\GH13513-PA 544 GH13513-PA 12..544 12..537 1680 82.6 Plus
Dgri\GH13412-PA 539 GH13412-PA 323..538 311..536 363 43.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
noc-PB 537 CG4491-PB 1..537 1..537 2792 100 Plus
noc-PA 537 CG4491-PA 1..537 1..537 2792 100 Plus
elB-PC 552 CG4220-PC 6..551 15..536 662 35.5 Plus
elB-PD 553 CG4220-PD 6..552 15..536 650 35.4 Plus
Muc91C-PB 949 CG7709-PB 475..925 52..523 158 23.5 Plus
Muc91C-PA 950 CG7709-PA 476..926 52..523 158 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10311-PA 524 GI10311-PA 12..524 12..537 1777 87.5 Plus
Dmoj\GI17650-PA 527 GI17650-PA 307..526 311..536 357 43.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25989-PA 537 GL25989-PA 12..537 12..537 1916 89.5 Plus
Dper\GL25769-PA 569 GL25769-PA 348..568 311..536 343 41.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18219-PA 537 GA18219-PA 12..537 12..537 1916 89.5 Plus
Dpse\GA18043-PA 573 GA18043-PA 352..572 311..536 344 41.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15623-PA 537 GM15623-PA 1..537 1..537 2741 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23964-PA 537 GD23964-PA 1..537 1..537 2740 99.3 Plus
Dsim\GD11969-PA 119 GD11969-PA 2..118 401..536 244 44.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18020-PA 524 GJ18020-PA 12..524 12..537 1855 88.2 Plus
Dvir\GJ18215-PA 521 GJ18215-PA 1..520 10..536 422 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18287-PA 549 GK18287-PA 12..549 12..537 1693 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19034-PA 537 GE19034-PA 1..537 1..537 2722 98.7 Plus
Dyak\GE25015-PA 549 GE25015-PA 326..548 311..536 344 42.3 Plus

LD28078.hyp Sequence

Translation from 357 to 1970

> LD28078.hyp
MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA
DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK
SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA
EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS
GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP
YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG
APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML
MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA
PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ
SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP
FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQ*

LD28078.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
noc-PB 537 CG4491-PB 1..537 1..537 2792 100 Plus
noc-PA 537 CG4491-PA 1..537 1..537 2792 100 Plus
elB-PC 552 CG4220-PC 6..551 15..536 662 35.5 Plus
elB-PD 553 CG4220-PD 6..552 15..536 650 35.4 Plus
Muc91C-PB 949 CG7709-PB 475..925 52..523 158 23.5 Plus