Clone LD28081 Report

Search the DGRC for LD28081

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:280
Well:81
Vector:pOT2
Associated Gene/TranscriptdUTPase-RB
Protein status:LD28081.pep: gold
Sequenced Size:703

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
dUTPase-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

LD28081.complete Sequence

703 bp assembled on 2009-08-05

GenBank Submission: BT089034.1

> LD28081.complete
ATTTTCCGACGCTGTGTTAAACCGCGTTATTTTCAGACCAGAATTCTGCA
ACTGCCAAGAAGATGAAGATCGACACGTGCGTCCTGCGATTCGCCAAACT
CACCGAGAATGCTTTGGAGCCGGTGAGGGGATCCGCCAAAGCGGCGGGAG
TTGACCTGCGCAGCGCCTACGACGTTGTGGTGCCGGCACGCGGAAAGGCC
ATTGTCAAGACCGATCTGCAAGTGCAGGTTCCGGAGGGCTCCTACGGACG
CGTAGCCCCACGATCCGGGCTGGCGGTGAAGAACTTCATTGATGTGGGCG
CCGGTGTGGTGGACGAGGATTATCGCGGCAATCTCGGCGTCGTCCTGTTC
AATCACTCAGATGTTGATTTCGAGGTGAAGCATGGCGACCGCATCGCCCA
GTTCATTTGCGAGCGTATCTTCTATCCGCAACTGGTGATGGTGGACAAAC
TGGAGGACACCGAGCGCGGCGAGGCAGGATTCGGTTCCACCGGAGTCAAG
GATCTGCCGGCAGCCAAGGCGCAGAACGGCAACGGAGAAAAGGCTGCCGA
ACCGGAGGGAGCTGCTCCGGCTCCTGTTGCTACGTAAACGAGGAACTATT
GCCGCATTCTTAATCCCTTCATGGTCACTATCAAAGAGTTTCATTCTGTA
TCCTTAAGTGAAATATGTTAATGTATTGGTATATTTTTATCTATTAAAAC
CGC

LD28081.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase.e 1264 dUTPase.e 141..843 1..703 3515 100 Plus
dUTPase-RB 955 dUTPase-RB 141..843 1..703 3515 100 Plus
dUTPase.c 768 dUTPase.c 100..753 50..703 3270 100 Plus
dUTPase.c 768 dUTPase.c 37..87 1..51 255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11010228..11010879 52..703 3260 100 Plus
chr2L 23010047 chr2L 11010085..11010135 1..51 255 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011472..11012123 52..703 3260 100 Plus
2L 23513712 2L 11011329..11011379 1..51 255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011472..11012123 52..703 3260 100 Plus
2L 23513712 2L 11011329..11011379 1..51 255 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:05:00 has no hits.

LD28081.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:06:12 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11010085..11010135 1..51 100 -> Plus
chr2L 11010228..11010879 52..703 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:47 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 20..567 38..587 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:54:43 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 20..567 38..587 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:26:11 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 20..567 38..587 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:11 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 20..567 38..587 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 12:59:28 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RB 1..700 4..703 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:54:43 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RB 1..700 4..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:26:11 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RB 37..739 1..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:11 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RB 18..720 1..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:06:12 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011329..11011379 1..51 100 -> Plus
2L 11011472..11012123 52..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:06:12 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011329..11011379 1..51 100 -> Plus
2L 11011472..11012123 52..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:06:12 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011329..11011379 1..51 100 -> Plus
2L 11011472..11012123 52..703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:26:11 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011329..11011379 1..51 100 -> Plus
arm_2L 11011472..11012123 52..703 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:46:26 Download gff for LD28081.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011472..11012123 52..703 100   Plus
2L 11011329..11011379 1..51 100 -> Plus

LD28081.pep Sequence

Translation from 62 to 586

> LD28081.pep
MKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKT
DLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSD
VDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGVKDLPA
AKAQNGNGEKAAEPEGAAPAPVAT*

LD28081.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15633-PA 212 GF15633-PA 15..175 1..161 786 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23694-PA 188 GG23694-PA 15..188 1..174 885 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10478-PA 171 GH10478-PA 1..168 3..164 717 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PB 174 CG4584-PB 1..174 1..174 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 1..174 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 1..174 887 100 Plus
dUTPase-PA 188 CG4584-PA 15..188 1..174 887 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15982-PA 173 GI15982-PA 1..170 1..164 734 84.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19531-PA 187 GL19531-PA 15..187 1..174 801 92 Plus
Dper\GL10062-PA 137 GL10062-PA 1..137 37..174 627 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18276-PA 187 GA18276-PA 15..187 1..174 809 92.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18802-PA 188 GM18802-PA 15..188 1..174 898 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23751-PA 188 GD23751-PA 15..188 1..174 898 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10455-PA 510 GJ10455-PA 341..507 6..169 685 80.8 Plus
Dvir\GJ10455-PA 510 GJ10455-PA 181..329 6..154 684 87.2 Plus
Dvir\GJ10455-PA 510 GJ10455-PA 15..169 1..154 663 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21239-PA 187 GK21239-PA 15..172 1..157 750 91.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\UTPase-PA 188 GE18505-PA 15..188 1..174 898 98.9 Plus

LD28081.hyp Sequence

Translation from 62 to 586

> LD28081.hyp
MKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKT
DLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSD
VDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGVKDLPA
AKAQNGNGEKAAEPEGAAPAPVAT*

LD28081.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PB 174 CG4584-PB 1..174 1..174 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 1..174 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 1..174 887 100 Plus
dUTPase-PA 188 CG4584-PA 15..188 1..174 887 100 Plus