Clone LD28084 Report

Search the DGRC for LD28084

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:280
Well:84
Vector:pOT2
Associated Gene/Transcriptfax-RA
Protein status:LD28084.pep: gold
Preliminary Size:1996
Sequenced Size:1883

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4609 2001-01-01 Release 2 assignment
CG4609 2001-10-10 Blastp of sequenced clone
CG4609 2003-01-01 Sim4 clustering to Release 3
fax 2008-04-29 Release 5.5 accounting
fax 2008-08-15 Release 5.9 accounting
fax 2008-12-18 5.12 accounting

Clone Sequence Records

LD28084.complete Sequence

1883 bp (1883 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061352

> LD28084.complete
GCATCTGGCCACACTGCCTGCAACGCTAGCTCGCCTTCGCAACGCGAATC
CGCTCATTTCAAATTTTCAAACTCCCGAGAGCGGTTGCGGCGGTGTCGAG
ACAGCGGCTCCTGAATCCATCCGAATCCGAAAGCGAATCGCATCCAGCCA
AGATATCCTATCGTGCAGCTGAAACCCGAAACCCGAATCCGAGTTCGAAA
CGAAACGAATCGCAGTGGTGGTTTCTCTCTCGCTCTCTAGCTCTCCCTCT
CTCTCGCGTGTGTGTATGTGTGCGAGTGGCAGGAAAAGTGCGAAGCCGAA
ATCTTTTTAGCTGAAAGAAAGCGCAACTTCAATTAGCGAAAAGCAAGAGT
AGCTAACAAAAAGAAAAGCGGATCGAAAAGTAAAGAAAAACAAAAAAAAA
AAACAAAAGCAACAAATCGAAATGGCAAGCGAAGTGGCCCAAATACCCGC
CGAGGAAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAA
AGTCAGCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCC
GCAGTGGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGC
CGGAAAGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGG
CGGTGGCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAA
TTCAATGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCA
GTTCTCGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGG
TGGAGACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCAT
AAGATGCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAA
TGGGGAGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCA
AATACGAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTC
TCGTACGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTT
CTACTGGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCA
ACTTGCAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTC
TTCTTTAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCT
GAAGGCGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCG
GCAAGGACGACCTGAAGGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTC
TTCTTCGGCGACGAGCCCACCACCCTGGATGTGGTGGCCTTCGCTGTCCT
CTCGCAGCTCCACTATCTGTCCAAGGACATTGCGTATCCGCTGCGCGACT
ACATGACCGAGAAGTGCCCCAACTTGATTGGCCACGTATCTCGCATGAAG
GACAAGTGCTTCCCCGACTGGGACGAGATCTGCACGAAGCTGGACCTCAA
TGCGCACATTCCCAAGCCAGAGCCCGAGACCAAGGAGGGCAAGGAGGGTG
GCGAGCAGGAGAAATCAAACGAACAGGAGGGCACTGAGGGCGACAAGATC
GAGAAGGAGTTGGAGAAGGACAAGTCAAACGAGAAGGAGTCGACCGAGGA
GAACAAAGAGAAGGAGGAAACAAAGTAAATTCGCCGTTAGTTATATGCGT
ACATATATCTAGTATATGTGTATGATCGAAGGAAACAGAAACACCCACAT
ACACACACATTATATATATATACATATGTAGTACGATACTATATAGTAAG
GCCCTATATAGCTAGGCGCTACGCTCTCATATATAAGCATTCAGACATCA
GAAAACCACTCGAAAAAAAAAAAAAAAAAAAAA

LD28084.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 3809 fax-RA 301..2183 1..1883 9370 99.8 Plus
fax.g 4299 fax.g 301..2183 1..1883 9370 99.8 Plus
fax.d 4339 fax.d 301..2183 1..1883 9370 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16400785..16401622 838..1 4190 100 Minus
chr3L 24539361 chr3L 16395283..16395631 1522..1174 1745 100 Minus
chr3L 24539361 chr3L 16396804..16397144 1177..837 1675 99.4 Minus
chr3L 24539361 chr3L 16394715..16394954 1862..1623 1170 99.2 Minus
chr3L 24539361 chr3L 16395108..16395210 1624..1522 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16411002..16411839 838..1 4190 100 Minus
3L 28110227 3L 16405501..16405849 1522..1174 1745 100 Minus
3L 28110227 3L 16407021..16407361 1177..837 1705 100 Minus
3L 28110227 3L 16404912..16405172 1883..1623 1260 98.9 Minus
3L 28110227 3L 16405326..16405428 1624..1522 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16404102..16404939 838..1 4190 100 Minus
3L 28103327 3L 16398601..16398949 1522..1174 1745 100 Minus
3L 28103327 3L 16400121..16400461 1177..837 1705 100 Minus
3L 28103327 3L 16398012..16398272 1883..1623 1260 98.8 Minus
3L 28103327 3L 16398426..16398528 1624..1522 515 100 Minus
Blast to na_te.dros performed 2019-03-16 21:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 1001..1063 114 66.7 Plus

LD28084.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:41 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16394715..16394952 1625..1862 99 <- Minus
chr3L 16395108..16395210 1522..1624 100 <- Minus
chr3L 16395284..16395627 1178..1521 100 <- Minus
chr3L 16396804..16397142 839..1177 99 <- Minus
chr3L 16400785..16401622 1..838 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:44 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 422..1678 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:34 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 422..1678 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:13 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 422..1678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:40 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 422..1678 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:55 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 422..1678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:04 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1862 1..1862 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:34 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1862 1..1862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:13 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1862 1..1862 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:40 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1862 1..1862 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:55 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1851 12..1862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:41 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16404933..16405170 1625..1862 100 <- Minus
3L 16405326..16405428 1522..1624 100 <- Minus
3L 16405502..16405845 1178..1521 100 <- Minus
3L 16407021..16407359 839..1177 100 <- Minus
3L 16411002..16411839 1..838 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:41 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16404933..16405170 1625..1862 100 <- Minus
3L 16405326..16405428 1522..1624 100 <- Minus
3L 16405502..16405845 1178..1521 100 <- Minus
3L 16407021..16407359 839..1177 100 <- Minus
3L 16411002..16411839 1..838 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:41 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16404933..16405170 1625..1862 100 <- Minus
3L 16405326..16405428 1522..1624 100 <- Minus
3L 16405502..16405845 1178..1521 100 <- Minus
3L 16407021..16407359 839..1177 100 <- Minus
3L 16411002..16411839 1..838 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:13 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398033..16398270 1625..1862 100 <- Minus
arm_3L 16398426..16398528 1522..1624 100 <- Minus
arm_3L 16398602..16398945 1178..1521 100 <- Minus
arm_3L 16400121..16400459 839..1177 100 <- Minus
arm_3L 16404102..16404939 1..838 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:46 Download gff for LD28084.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16404102..16404939 1..838 100   Minus
3L 16398033..16398270 1625..1862 100 <- Minus
3L 16398426..16398528 1522..1624 100 <- Minus
3L 16398602..16398945 1178..1521 100 <- Minus
3L 16400121..16400459 839..1177 100 <- Minus

LD28084.hyp Sequence

Translation from 421 to 1677

> LD28084.hyp
MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED
ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN
FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK
KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM
LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG
RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT
TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW
DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD
KSNEKESTEENKEKEETK*

LD28084.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
fax-PA 418 CG4609-PA 1..418 1..418 2187 100 Plus
fax-PC 415 CG4609-PC 1..415 1..418 2151 99.3 Plus
fax-PB 282 CG4609-PB 4..282 140..418 1478 100 Plus
fax-PF 274 CG4609-PF 1..274 145..418 1449 100 Plus
fax-PD 279 CG4609-PD 4..279 140..418 1442 98.9 Plus

LD28084.pep Sequence

Translation from 421 to 1677

> LD28084.pep
MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED
ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN
FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK
KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM
LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG
RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT
TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW
DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD
KSNEKESTEENKEKEETK*

LD28084.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10211-PA 415 GF10211-PA 1..400 1..403 1781 85.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13452-PA 418 GG13452-PA 1..418 1..418 2171 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15590-PA 441 GH15590-PA 1..426 1..403 1696 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
fax-PA 418 CG4609-PA 1..418 1..418 2187 100 Plus
fax-PC 415 CG4609-PC 1..415 1..418 2151 99.3 Plus
fax-PB 282 CG4609-PB 4..282 140..418 1478 100 Plus
fax-PF 274 CG4609-PF 1..274 145..418 1449 100 Plus
fax-PD 279 CG4609-PD 4..279 140..418 1442 98.9 Plus
fax-PE 271 CG4609-PE 1..271 145..418 1413 98.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16867-PA 426 GI16867-PA 1..411 1..403 1692 83.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17995-PA 419 GL17995-PA 1..404 1..403 1722 87.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18298-PA 419 GA18298-PA 1..404 1..403 1722 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24402-PA 415 GM24402-PA 1..415 1..418 2164 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12471-PA 415 GD12471-PA 1..415 1..418 2171 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\fax-PA 425 GJ12617-PA 87..410 77..403 1680 96 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17490-PA 434 GK17490-PA 1..419 1..403 1724 82.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22555-PA 418 GE22555-PA 1..418 1..418 2189 98.8 Plus
Dyak\GE23001-PA 150 GE23001-PA 1..148 1..148 603 93.2 Plus