BDGP Sequence Production Resources |
Search the DGRC for LD28084
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 280 |
Well: | 84 |
Vector: | pOT2 |
Associated Gene/Transcript | fax-RA |
Protein status: | LD28084.pep: gold |
Preliminary Size: | 1996 |
Sequenced Size: | 1883 |
Gene | Date | Evidence |
---|---|---|
CG4609 | 2001-01-01 | Release 2 assignment |
CG4609 | 2001-10-10 | Blastp of sequenced clone |
CG4609 | 2003-01-01 | Sim4 clustering to Release 3 |
fax | 2008-04-29 | Release 5.5 accounting |
fax | 2008-08-15 | Release 5.9 accounting |
fax | 2008-12-18 | 5.12 accounting |
1883 bp (1883 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061352
> LD28084.complete GCATCTGGCCACACTGCCTGCAACGCTAGCTCGCCTTCGCAACGCGAATC CGCTCATTTCAAATTTTCAAACTCCCGAGAGCGGTTGCGGCGGTGTCGAG ACAGCGGCTCCTGAATCCATCCGAATCCGAAAGCGAATCGCATCCAGCCA AGATATCCTATCGTGCAGCTGAAACCCGAAACCCGAATCCGAGTTCGAAA CGAAACGAATCGCAGTGGTGGTTTCTCTCTCGCTCTCTAGCTCTCCCTCT CTCTCGCGTGTGTGTATGTGTGCGAGTGGCAGGAAAAGTGCGAAGCCGAA ATCTTTTTAGCTGAAAGAAAGCGCAACTTCAATTAGCGAAAAGCAAGAGT AGCTAACAAAAAGAAAAGCGGATCGAAAAGTAAAGAAAAACAAAAAAAAA AAACAAAAGCAACAAATCGAAATGGCAAGCGAAGTGGCCCAAATACCCGC CGAGGAAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAA AGTCAGCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCC GCAGTGGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGC CGGAAAGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGG CGGTGGCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAA TTCAATGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCA GTTCTCGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGG TGGAGACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCAT AAGATGCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAA TGGGGAGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCA AATACGAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTC TCGTACGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTT CTACTGGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCA ACTTGCAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTC TTCTTTAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCT GAAGGCGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCG GCAAGGACGACCTGAAGGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTC TTCTTCGGCGACGAGCCCACCACCCTGGATGTGGTGGCCTTCGCTGTCCT CTCGCAGCTCCACTATCTGTCCAAGGACATTGCGTATCCGCTGCGCGACT ACATGACCGAGAAGTGCCCCAACTTGATTGGCCACGTATCTCGCATGAAG GACAAGTGCTTCCCCGACTGGGACGAGATCTGCACGAAGCTGGACCTCAA TGCGCACATTCCCAAGCCAGAGCCCGAGACCAAGGAGGGCAAGGAGGGTG GCGAGCAGGAGAAATCAAACGAACAGGAGGGCACTGAGGGCGACAAGATC GAGAAGGAGTTGGAGAAGGACAAGTCAAACGAGAAGGAGTCGACCGAGGA GAACAAAGAGAAGGAGGAAACAAAGTAAATTCGCCGTTAGTTATATGCGT ACATATATCTAGTATATGTGTATGATCGAAGGAAACAGAAACACCCACAT ACACACACATTATATATATATACATATGTAGTACGATACTATATAGTAAG GCCCTATATAGCTAGGCGCTACGCTCTCATATATAAGCATTCAGACATCA GAAAACCACTCGAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16400785..16401622 | 838..1 | 4190 | 100 | Minus |
chr3L | 24539361 | chr3L | 16395283..16395631 | 1522..1174 | 1745 | 100 | Minus |
chr3L | 24539361 | chr3L | 16396804..16397144 | 1177..837 | 1675 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 16394715..16394954 | 1862..1623 | 1170 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 16395108..16395210 | 1624..1522 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16411002..16411839 | 838..1 | 4190 | 100 | Minus |
3L | 28110227 | 3L | 16405501..16405849 | 1522..1174 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 16407021..16407361 | 1177..837 | 1705 | 100 | Minus |
3L | 28110227 | 3L | 16404912..16405172 | 1883..1623 | 1260 | 98.9 | Minus |
3L | 28110227 | 3L | 16405326..16405428 | 1624..1522 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16404102..16404939 | 838..1 | 4190 | 100 | Minus |
3L | 28103327 | 3L | 16398601..16398949 | 1522..1174 | 1745 | 100 | Minus |
3L | 28103327 | 3L | 16400121..16400461 | 1177..837 | 1705 | 100 | Minus |
3L | 28103327 | 3L | 16398012..16398272 | 1883..1623 | 1260 | 98.8 | Minus |
3L | 28103327 | 3L | 16398426..16398528 | 1624..1522 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 1001..1063 | 114 | 66.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16394715..16394952 | 1625..1862 | 99 | <- | Minus |
chr3L | 16395108..16395210 | 1522..1624 | 100 | <- | Minus |
chr3L | 16395284..16395627 | 1178..1521 | 100 | <- | Minus |
chr3L | 16396804..16397142 | 839..1177 | 99 | <- | Minus |
chr3L | 16400785..16401622 | 1..838 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1257 | 422..1678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1257 | 422..1678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1257 | 422..1678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1257 | 422..1678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1257 | 422..1678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1862 | 1..1862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1862 | 1..1862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1862 | 1..1862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1862 | 1..1862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fax-RA | 1..1851 | 12..1862 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16404933..16405170 | 1625..1862 | 100 | <- | Minus |
3L | 16405326..16405428 | 1522..1624 | 100 | <- | Minus |
3L | 16405502..16405845 | 1178..1521 | 100 | <- | Minus |
3L | 16407021..16407359 | 839..1177 | 100 | <- | Minus |
3L | 16411002..16411839 | 1..838 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16404933..16405170 | 1625..1862 | 100 | <- | Minus |
3L | 16405326..16405428 | 1522..1624 | 100 | <- | Minus |
3L | 16405502..16405845 | 1178..1521 | 100 | <- | Minus |
3L | 16407021..16407359 | 839..1177 | 100 | <- | Minus |
3L | 16411002..16411839 | 1..838 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16404933..16405170 | 1625..1862 | 100 | <- | Minus |
3L | 16405326..16405428 | 1522..1624 | 100 | <- | Minus |
3L | 16405502..16405845 | 1178..1521 | 100 | <- | Minus |
3L | 16407021..16407359 | 839..1177 | 100 | <- | Minus |
3L | 16411002..16411839 | 1..838 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16398033..16398270 | 1625..1862 | 100 | <- | Minus |
arm_3L | 16398426..16398528 | 1522..1624 | 100 | <- | Minus |
arm_3L | 16398602..16398945 | 1178..1521 | 100 | <- | Minus |
arm_3L | 16400121..16400459 | 839..1177 | 100 | <- | Minus |
arm_3L | 16404102..16404939 | 1..838 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16404102..16404939 | 1..838 | 100 | Minus | |
3L | 16398033..16398270 | 1625..1862 | 100 | <- | Minus |
3L | 16398426..16398528 | 1522..1624 | 100 | <- | Minus |
3L | 16398602..16398945 | 1178..1521 | 100 | <- | Minus |
3L | 16400121..16400459 | 839..1177 | 100 | <- | Minus |
Translation from 421 to 1677
> LD28084.hyp MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD KSNEKESTEENKEKEETK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fax-PA | 418 | CG4609-PA | 1..418 | 1..418 | 2187 | 100 | Plus |
fax-PC | 415 | CG4609-PC | 1..415 | 1..418 | 2151 | 99.3 | Plus |
fax-PB | 282 | CG4609-PB | 4..282 | 140..418 | 1478 | 100 | Plus |
fax-PF | 274 | CG4609-PF | 1..274 | 145..418 | 1449 | 100 | Plus |
fax-PD | 279 | CG4609-PD | 4..279 | 140..418 | 1442 | 98.9 | Plus |
Translation from 421 to 1677
> LD28084.pep MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD KSNEKESTEENKEKEETK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10211-PA | 415 | GF10211-PA | 1..400 | 1..403 | 1781 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13452-PA | 418 | GG13452-PA | 1..418 | 1..418 | 2171 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15590-PA | 441 | GH15590-PA | 1..426 | 1..403 | 1696 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fax-PA | 418 | CG4609-PA | 1..418 | 1..418 | 2187 | 100 | Plus |
fax-PC | 415 | CG4609-PC | 1..415 | 1..418 | 2151 | 99.3 | Plus |
fax-PB | 282 | CG4609-PB | 4..282 | 140..418 | 1478 | 100 | Plus |
fax-PF | 274 | CG4609-PF | 1..274 | 145..418 | 1449 | 100 | Plus |
fax-PD | 279 | CG4609-PD | 4..279 | 140..418 | 1442 | 98.9 | Plus |
fax-PE | 271 | CG4609-PE | 1..271 | 145..418 | 1413 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16867-PA | 426 | GI16867-PA | 1..411 | 1..403 | 1692 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17995-PA | 419 | GL17995-PA | 1..404 | 1..403 | 1722 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18298-PA | 419 | GA18298-PA | 1..404 | 1..403 | 1722 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24402-PA | 415 | GM24402-PA | 1..415 | 1..418 | 2164 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12471-PA | 415 | GD12471-PA | 1..415 | 1..418 | 2171 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\fax-PA | 425 | GJ12617-PA | 87..410 | 77..403 | 1680 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17490-PA | 434 | GK17490-PA | 1..419 | 1..403 | 1724 | 82.9 | Plus |