Clone LD28119 Report

Search the DGRC for LD28119

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:281
Well:19
Vector:pOT2
Associated Gene/TranscriptCG10898-RA
Protein status:LD28119.pep: gold
Preliminary Size:1937
Sequenced Size:1950

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10898 2001-01-01 Release 2 assignment
CG10898 2001-12-12 Blastp of sequenced clone
CG10898 2003-01-01 Sim4 clustering to Release 3
CG10898 2008-04-29 Release 5.5 accounting
CG10898 2008-08-15 Release 5.9 accounting
CG10898 2008-12-18 5.12 accounting

Clone Sequence Records

LD28119.complete Sequence

1950 bp (1950 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070551

> LD28119.complete
CGCACTTGCAAATCAATTAGGCCATAAATGGCATTGCAATAAATGAGTGT
GCACCACCTAATGACCCATCGATAAACGGAGCTGTTAAGTACCGCGACGA
GAAGAATAGCGAACAGCTGGCGCAGACGGAGACGGAGACACATTCCGATG
CACTTTCTCCTGAAGAAAACCCGTCGAGCGGCTTATTTGACATCCATTTC
GATATCAATACAGAGAAATAGAGAGAAATAGCAAGAAATAGAGGCCACAG
CACCACCAGCCAGCCACCTGTGTAGCGACAACAAGCGACGAGCTGCAAAA
ACAACAACAAAAAGTTGATTGCCATCGTCTTGGCCATTTTATTGGGCATT
ATAGCCGCAGTCAGTCACATACCGCCCGTTCTCGAGTTCGCCACGATTGC
TTAAACTGTTTGCGTTTGCAGAGCACAGAGCACTCCAAAGAATTCGTAAT
TTGCATATATAGAACCTCAGAGATATATGCAGAGATTCCGACTGGGCGTA
GCATGTTCAGCGAACTGAGTCAGCCGCCTTGAAATTTAGCGCTTAAACAA
AACAGGATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTTTGGACTCAAA
AGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCTCTTAAGGAAC
AGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATCCGCATCCGAT
TTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGGCCTGTGTGTT
GATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCCAAACAGAGCT
GTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAGGGGCGAATCC
ATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTGGTCTAAATGC
CGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGCTCTTGGTTCC
GCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAAAACTCCTGCG
GATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTAATCCCAAGGA
AGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAGATTGGAAGGG
CGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACCCTGGCATGGG
ACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATCTGCGGGTTCT
GGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATCCTGGTCAGTG
AAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCCGAATCGCAGC
CTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTGGTGCGGAGCT
GCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCACTCAGCTTCGG
AGCAGGAGAACACTGATGGAATATGCCTTAATCTGCTGGTGGCTTTCCGA
CCGCCACTGGAGGAAATCTCGCTGATCGGCAAGTGCATTTGGCAGGAACT
GGGTGCGCCACTTGACGAGATGCTGGGACGTATCGTCAGCAGCAAGAACG
CATCCATTCCGCTGAATGTGGTGCGCTAAAATGCCTTAGACTAGAGTAAT
CTGTCCTTATTTATGGTGCAAGCAATCTATCCGTTGTTAGTTGCAATTAA
AGATAGCAGATGTCTGCCAGATGTCCGACTGTAAGGCAAATGTTTCCCTC
CTTGGTGCTAAATAGTGAATTACGTAGATAAGTCTCTGCCAATCTGTCAT
AAAACGCCTAGAAGTAATCTTAACCTCTTAACCCATTCCCCTTTCTTGGT
GAAAGATCTAATCTGAAGTTTACTCGTTTGCGTAGCCTAATCTATTCTAG
AGATTTACTTAGAAAACTGTTTACTATTATATAGTACCAATTAAAATATT
CACGTTTTCATGCGAACTAAATAATCCAAAAAAAAAAAAAAAAAAAAAAA

LD28119.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 2059 CG10898-RA 133..2059 1..1927 9635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7384244..7385365 806..1927 5610 100 Plus
chr3R 27901430 chr3R 7383306..7383852 1..547 2735 100 Plus
chr3R 27901430 chr3R 7383914..7384173 548..807 1300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559882 806..1932 5635 100 Plus
3R 32079331 3R 11557818..11558364 1..547 2735 100 Plus
3R 32079331 3R 11558426..11558685 548..807 1300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11299587..11300713 806..1932 5635 100 Plus
3R 31820162 3R 11298649..11299195 1..547 2735 100 Plus
3R 31820162 3R 11299257..11299516 548..807 1300 100 Plus
Blast to na_te.dros performed 2019-03-15 18:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2434 162..312 139 60.2 Plus

LD28119.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:54 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7383306..7383852 1..547 100 -> Plus
chr3R 7383914..7384172 548..806 100 -> Plus
chr3R 7384245..7385365 807..1927 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:48 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 557..1579 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:51 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 557..1579 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:39 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 557..1579 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:17:03 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 557..1579 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:49 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 557..1579 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:57 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 90..2016 1..1927 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:51 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 90..2016 1..1927 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:39 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 90..2016 1..1927 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:17:03 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 90..2016 1..1927 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:49 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 43..1969 1..1927 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:54 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11557818..11558364 1..547 100 -> Plus
3R 11558426..11558684 548..806 100 -> Plus
3R 11558757..11559877 807..1927 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:54 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11557818..11558364 1..547 100 -> Plus
3R 11558426..11558684 548..806 100 -> Plus
3R 11558757..11559877 807..1927 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:54 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11557818..11558364 1..547 100 -> Plus
3R 11558426..11558684 548..806 100 -> Plus
3R 11558757..11559877 807..1927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:39 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7383540..7384086 1..547 100 -> Plus
arm_3R 7384148..7384406 548..806 100 -> Plus
arm_3R 7384479..7385599 807..1927 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:49 Download gff for LD28119.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11298649..11299195 1..547 100 -> Plus
3R 11299257..11299515 548..806 100 -> Plus
3R 11299588..11300708 807..1927 100   Plus

LD28119.hyp Sequence

Translation from 556 to 1578

> LD28119.hyp
MASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFV
PILGQTVTYIVACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESIT
EAAAREVFEETGLNAELTTLLAVEAAGGSWFRFVLTGRITGGRLKTPADA
DAESIQARWVRNPKEVPLRANDILSIIEIGRAYHQGQKIAISPSPWHGTI
LPTRFAHKRNYLRVLAVARKRAHNSLNILVSEKNAHHFPTVELHPNRSLH
STLRKFMIEIFGAELPQHRPHGLLSVEHSASEQENTDGICLNLLVAFRPP
LEEISLIGKCIWQELGAPLDEMLGRIVSSKNASIPLNVVR*

LD28119.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 340 CG10898-PA 1..340 1..340 1743 100 Plus

LD28119.pep Sequence

Translation from 556 to 1578

> LD28119.pep
MASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFV
PILGQTVTYIVACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESIT
EAAAREVFEETGLNAELTTLLAVEAAGGSWFRFVLTGRITGGRLKTPADA
DAESIQARWVRNPKEVPLRANDILSIIEIGRAYHQGQKIAISPSPWHGTI
LPTRFAHKRNYLRVLAVARKRAHNSLNILVSEKNAHHFPTVELHPNRSLH
STLRKFMIEIFGAELPQHRPHGLLSVEHSASEQENTDGICLNLLVAFRPP
LEEISLIGKCIWQELGAPLDEMLGRIVSSKNASIPLNVVR*

LD28119.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18377-PA 340 GF18377-PA 1..340 1..340 1646 90.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18222-PA 340 GG18222-PA 1..340 1..340 1774 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17327-PA 345 GH17327-PA 1..345 1..340 1511 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 340 CG10898-PA 1..340 1..340 1743 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10291-PA 346 GI10291-PA 1..346 1..340 1541 82.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12379-PA 345 GL12379-PA 1..345 1..340 1603 87 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10624-PA 345 GA10624-PA 1..345 1..340 1605 87.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23952-PA 340 GM23952-PA 1..340 1..340 1794 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18763-PA 340 GD18763-PA 1..340 1..340 1801 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11098-PA 346 GJ11098-PA 1..346 1..340 1520 81.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11300-PA 346 GK11300-PA 1..346 1..340 1501 80.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24179-PA 340 GE24179-PA 1..340 1..340 1763 97.6 Plus