Clone LD28135 Report

Search the DGRC for LD28135

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:281
Well:35
Vector:pOT2
Associated Gene/TranscriptCG14749-RA
Protein status:LD28135.pep: gold
Preliminary Size:2331
Sequenced Size:2300

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14749 2001-01-01 Release 2 assignment
CG14749 2001-10-10 Blastp of sequenced clone
CG14749 2003-01-01 Sim4 clustering to Release 3
CG14749 2008-04-29 Release 5.5 accounting
CG14749 2008-08-15 Release 5.9 accounting
CG14749 2008-12-18 5.12 accounting

Clone Sequence Records

LD28135.complete Sequence

2300 bp (2300 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061354

> LD28135.complete
AGTAATATTAAATTGAGTTGGCAGTCTTATGCTATATTTTTGTTGATTAA
AAAGTGTAAAAACATATTCGAAATTAAAAGTAGTAATCGTATTAAGACAC
TGGGTTGTGATTGGCGCTATTCGAGACCTTTTAGAGCATGGACGACATGA
TGCGGGCGATGGACTGTCTAAATATGGCAGCGACGTTGCGCAACGCGGCT
CTGGCGTCCGCAACGTGCACGGGCAGGACTTTGGGCGAGGATCGGGAACC
TATATGGGTGGAGGGCAGTCGGAAGACACCTGAGCCACCATTACCCGAAG
AAAGCCCAGCTCCAGAGCCCAATAACGAGATTCCCCTGCTGCCCAAAATA
GATTTTGAGCCTAATATATCTTGCTTTCCCGACCTACAGGCTATCAACGC
TAGCATTGTTAGGCGGGAACTGGAGGAGGAGGGTAAGAGGTGTGTCCGCC
AGCAGCTAAAGGCGATAAGGGACAAACAGGACGCCATGCGCCTGTCGCGA
GAGACGCAGCAAAGGAAGGAGGAACGCCAGCGCGACCAGTTGCAACAAAA
GGCGCTGCGGGAACGCAATGAAAGTCTCCTTATCCAGAAAGCTGACCAGA
TGACTGCGGCACAACTAGAGGCCCAGCAGCGCGAGCAATTGGCACTGCGC
CAACAGATTGACCAGAAGCTGCACAAGTTGGCCCTGGAGGGCGTGTCCCG
CTGCCAAAGGAGATTCAACCAGAAGTACGAGGGCATCGCCAAAATTCTGC
TTTCTCTGAATCCAGAAACGGTCAAGGTGTGCGCCGCGCAAAACACACAG
CTCAAAGAGTTGGGCCAGAAATTTGAACAGCTCGTGAGCTCCGTTAAGAT
GGGCAATTGCGAGATGCAGAGCCAGTTCCTCTGCTCCATAATCAAGGCGG
AAGAGTTCTGCAAGAGCCTGGATGCTCTGGAGCTGGACATCATTAAGCAG
CTGGCCGAGTTCTCCGAACAGATCCAGCAGCAGCTCAAAATGGAGGCCGC
CAAGAAGCTGGAAGACGAGCGACAAAGGCAGCAGCAGCAGGAGGAAGAGC
GACAAAAGCTGGAGGAGCAACAAAAGCTGGAGGAGCAGGAAAAGCTAAGG
AAGGAAAAGGAGGAATCGGCGGCTAAGGAAAAACAACAAGAGGCCGAGAC
TGCCAAGGCCGATGCGGCCAATGTTCCCGCTCCGCTTGAGCCAAAATCCC
AAGATGTGCCACCAGCGGCCACGGCGACATCTACTTCTGTTCACCCAGAC
CGTCTGAAGTTCTACAACGATATCCTAGCACTGTATCAGTCCAAAGTGGA
TGCCGTAAAGCCGCTGCAAACGGAGGAATCCCTTAAGCAGTATCGCACCG
GTTGCCAGAGGGCAATAAACCTGCCCCTCAACGCCATTTCAGCAGTTAGT
CCGCAGCATCTAGCCCAGAACTTTGACAAGCTGTACAGCTTCTTTGCCGG
CCAGCCTACCAAGGTGATGAATGGCACCATAACTATTAACGACCATCCGC
TGGCCCGAGACTATTGCATGCTACTTATGGCCAAGAAGTTTGTCAGTCAA
ACGGAGACTGCCATATGCAGCAATCCCCAGGCCGCCTTTCCCTTTGCCTC
GGTGATAATAACTTTTTGGAAGCTGTTGCCGGATTTTGGTAAGGTTTTTC
TCGCCTACATGTACAAAGAGTCACCCTTTCTGGTGCCTTACGTTATACCC
CAGCAGCAGGGACAGACTCCGGAGCAGTATCTGAAGACCATAGGCTATCG
GCTGACGGATAAAAACGAGCTGGAGAAACCGGACATTTACCTTAAGCGTC
AAACGGGACTCGCTCGGCTCTACGCAGCTGTGATCATTAGTCAAGGGCGA
AAGGCAGCTGGACCGGATGAATGCTTCGAGCTGAATGAGGGATGGCTCTG
GCTAGCGCACATGGTGCATGTGAAACCATTGCCCGATATTAGTGCTACCT
TGATCATGGAGATTCTCCAGACCCTCGGCTTCGAGTTGTGGCGCACCTAC
GGCAAGCAGTTCGTCAAGCTGCTGGTCTACATTCAGAATATCTACATGCC
TCAGCTGGCAGCCTACGACGAAGGTGGTCCGAAGACACGGCTGGAAATGC
TCCTGGCCAAGTTCCTGCGTGAGCGGCAGATTGCACAGGCTGTCGGAGTT
TTGCCTCCAGGATTTTGGTAGGCATGCGATGATTTAGTTAGTTTTGTTAA
GTGTGTGTATTTTTATAAACAAAAGTGATTATTGTAGTAATGGGACGTGT
ATTCATTCAGTAAATAGAGAAAACTTGCTTGTAAAAAAAAAAAAAAAAAA

LD28135.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14749-RA 2310 CG14749-RA 29..2310 1..2282 11410 100 Plus
CG14749.b 2255 CG14749.b 39..1676 1..1638 8190 100 Plus
CG14749.a 2252 CG14749.a 39..1676 1..1638 8190 100 Plus
CG14749.b 2255 CG14749.b 1676..2255 1703..2282 2900 100 Plus
CG14749.a 2252 CG14749.a 1676..2252 1706..2282 2885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4515516..4517797 1..2282 11365 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8627905..8630189 1..2285 11425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8629104..8631388 1..2285 11425 100 Plus
Blast to na_te.dros performed 2019-03-15 22:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2616 967..1231 183 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2459 1006..1142 182 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6901 967..1139 174 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6847 1013..1142 173 62.4 Plus
roo 9092 roo DM_ROO 9092bp 998..1143 938..1090 163 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6837 985..1114 154 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6928 967..1148 151 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6858 974..1111 150 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6916 975..1097 140 59.7 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 883..1052 935..1102 133 57.2 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3326..3411 726..812 126 63.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3370 978..1108 116 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2445..2512 1020..1087 115 63.2 Plus

LD28135.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:34 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4515516..4517797 1..2282 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:52 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 1..2034 138..2171 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:37 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 1..2034 138..2171 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:24 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 1..2034 138..2171 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:42 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 1..2034 138..2171 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:17 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 1..2034 138..2171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:08 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 29..2310 1..2282 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:37 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 29..2310 1..2282 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:24 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 6..2287 1..2282 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:42 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 29..2310 1..2282 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:17 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
CG14749-RA 6..2287 1..2282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:34 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8627905..8630186 1..2282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:34 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8627905..8630186 1..2282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:34 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8627905..8630186 1..2282 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:24 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4515410..4517691 1..2282 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:48 Download gff for LD28135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8629104..8631385 1..2282 100   Plus

LD28135.pep Sequence

Translation from 137 to 2170

> LD28135.pep
MDDMMRAMDCLNMAATLRNAALASATCTGRTLGEDREPIWVEGSRKTPEP
PLPEESPAPEPNNEIPLLPKIDFEPNISCFPDLQAINASIVRRELEEEGK
RCVRQQLKAIRDKQDAMRLSRETQQRKEERQRDQLQQKALRERNESLLIQ
KADQMTAAQLEAQQREQLALRQQIDQKLHKLALEGVSRCQRRFNQKYEGI
AKILLSLNPETVKVCAAQNTQLKELGQKFEQLVSSVKMGNCEMQSQFLCS
IIKAEEFCKSLDALELDIIKQLAEFSEQIQQQLKMEAAKKLEDERQRQQQ
QEEERQKLEEQQKLEEQEKLRKEKEESAAKEKQQEAETAKADAANVPAPL
EPKSQDVPPAATATSTSVHPDRLKFYNDILALYQSKVDAVKPLQTEESLK
QYRTGCQRAINLPLNAISAVSPQHLAQNFDKLYSFFAGQPTKVMNGTITI
NDHPLARDYCMLLMAKKFVSQTETAICSNPQAAFPFASVIITFWKLLPDF
GKVFLAYMYKESPFLVPYVIPQQQGQTPEQYLKTIGYRLTDKNELEKPDI
YLKRQTGLARLYAAVIISQGRKAAGPDECFELNEGWLWLAHMVHVKPLPD
ISATLIMEILQTLGFELWRTYGKQFVKLLVYIQNIYMPQLAAYDEGGPKT
RLEMLLAKFLRERQIAQAVGVLPPGFW*

LD28135.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12371-PA 671 GF12371-PA 3..671 1..677 2354 66.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23374-PA 668 GG23374-PA 1..668 1..677 2947 86 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20085-PA 667 GH20085-PA 13..667 15..677 1808 56.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Gle1-PA 677 CG14749-PA 1..677 1..677 3468 100 Plus
rgn-PD 800 CG6014-PD 357..759 30..423 175 24.3 Plus
rgn-PA 800 CG6014-PA 357..759 30..423 175 24.3 Plus
rgn-PC 808 CG6014-PC 365..767 30..423 175 24.3 Plus
rgn-PB 808 CG6014-PB 365..767 30..423 175 24.3 Plus
rudhira-PE 2075 CG43154-PE 1327..1680 33..363 168 21.2 Plus
rudhira-PC 2075 CG43154-PC 1327..1680 33..363 168 21.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18800-PA 667 GI18800-PA 1..667 11..677 1890 57.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10415-PA 667 GL10415-PA 3..667 1..677 2366 67 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13221-PA 672 GA13221-PA 3..672 1..677 2352 66.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21051-PA 490 GM21051-PA 1..488 1..486 1979 91.4 Plus
Dsec\GM21052-PA 170 GM21052-PA 1..170 508..677 917 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10583-PA 236 GD10583-PA 1..229 1..229 1007 90.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21828-PA 675 GJ21828-PA 3..675 1..677 1872 57.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16987-PA 700 GK16987-PA 1..700 8..677 1856 54.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19215-PA 670 GE19215-PA 1..670 1..677 2993 86.9 Plus

LD28135.hyp Sequence

Translation from 137 to 2170

> LD28135.hyp
MDDMMRAMDCLNMAATLRNAALASATCTGRTLGEDREPIWVEGSRKTPEP
PLPEESPAPEPNNEIPLLPKIDFEPNISCFPDLQAINASIVRRELEEEGK
RCVRQQLKAIRDKQDAMRLSRETQQRKEERQRDQLQQKALRERNESLLIQ
KADQMTAAQLEAQQREQLALRQQIDQKLHKLALEGVSRCQRRFNQKYEGI
AKILLSLNPETVKVCAAQNTQLKELGQKFEQLVSSVKMGNCEMQSQFLCS
IIKAEEFCKSLDALELDIIKQLAEFSEQIQQQLKMEAAKKLEDERQRQQQ
QEEERQKLEEQQKLEEQEKLRKEKEESAAKEKQQEAETAKADAANVPAPL
EPKSQDVPPAATATSTSVHPDRLKFYNDILALYQSKVDAVKPLQTEESLK
QYRTGCQRAINLPLNAISAVSPQHLAQNFDKLYSFFAGQPTKVMNGTITI
NDHPLARDYCMLLMAKKFVSQTETAICSNPQAAFPFASVIITFWKLLPDF
GKVFLAYMYKESPFLVPYVIPQQQGQTPEQYLKTIGYRLTDKNELEKPDI
YLKRQTGLARLYAAVIISQGRKAAGPDECFELNEGWLWLAHMVHVKPLPD
ISATLIMEILQTLGFELWRTYGKQFVKLLVYIQNIYMPQLAAYDEGGPKT
RLEMLLAKFLRERQIAQAVGVLPPGFW*

LD28135.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14749-PA 677 CG14749-PA 1..677 1..677 3468 100 Plus
rgn-PD 800 CG6014-PD 357..759 30..423 175 24.3 Plus
rgn-PA 800 CG6014-PA 357..759 30..423 175 24.3 Plus
rgn-PC 808 CG6014-PC 365..767 30..423 175 24.3 Plus
rgn-PB 808 CG6014-PB 365..767 30..423 175 24.3 Plus