Clone LD28275 Report

Search the DGRC for LD28275

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:282
Well:75
Vector:pOT2
Associated Gene/TranscriptCG7275-RA
Protein status:LD28275.pep: gold
Preliminary Size:1531
Sequenced Size:1454

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7275 2001-09-19 Blastp of sequenced clone
CG7275 2003-01-01 Sim4 clustering to Release 3
CG7275 2008-04-29 Release 5.5 accounting
CG7275 2008-08-15 Release 5.9 accounting
CG7275 2008-12-18 5.12 accounting

Clone Sequence Records

LD28275.complete Sequence

1454 bp (1454 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058590

> LD28275.complete
TTTTATTTTACGCCGCAGAAAAGCTTAATAAATGCAATCAGGATGAAGGT
GAAAATGATTAGTCGCAATCCGGATAACTATGTCCGAGAAACCAAACTGC
AACAGCACAAAATGCCCAGGAACTACGATCCTTCGCTGCATCCTTTGGAG
GGTCCCAGGGAATACGTGCGTGCCCTGAATGCCACCAAGTTGGATCGAGT
ATTTGCCAAACCCTTCGTCTGCAATTTGAGCGGGCATCGCGATGGAGTCT
CCTGCTTCGGAAAGCATCCCAAGCAACTTTCCACCTTGGCCACCGGCGCC
TATGACGGCGAAGTGCGCATTTGGGACTTGGCGAATCGTATCAGCTCTCG
GAACTTTGTGGCCCACGACGGTTTCGTTCGCGGCATTGCTTACACCCAGA
ACGGAGGTCGCATTTTCACCGTGGGAGATGATAAAACCATCAAGGTTTGG
AAAGCAGAGGCTCCGGAAGTCGGCGAGGATGAGGTGCCGGTGAACACTAT
ACTGAGTAAATTTGGACTGCACGGCATCTCGCACAATCGCAGGGATAACA
AGTTCGCCACCTGTGGCGAGGTATGCGCCATTTGGGACGAAAGGCACAAC
GATCCTTTGAAGACATTGAAGTGGGGCGTCGATACCCTTCACACCATATC
CTATAACCCCGTGGAAACAAGCATCCTGGCGTGCTGTGCCAGCGATCGCA
GCATTATCCTGTACGATCAGAGAGAGGCGCAGCCACTAAGGAAGGTCGTC
CTAACCATGAAGAGCAACAAGCTCGCGTGGAATCCCATGGAGGCGTTCAA
CTTCACAGTGGCCAACGAGGATTGCAACCTTTATACCTTTGACACTCGCA
AGCTGCAAACGCCGCTGAAGGTTCACTTTGACCATGTTTCCGCTGTCACC
GATGTTGACTACTCGCCCACTGGCAAGGAATTCGTCTCGGCCAGCTACGA
CAAGACCATTCGGATCTACAATGCCCACCACAGTCACTCGCGGGATATTT
ACCACACAAAACGCATGCAGCATGTGGTCTGCGTGGCCTGGTCCCTCGAT
AATCGATACGTTTTCTCCGGCTCCGACGAAATGAACGTCCGCATGTGGAA
GGCGAATGCCTCCGAAAAGCTGGGCGTCATCCGTCCACGTGAGCGCGTCA
ATTTCAATTACCAGGAGGCGCTGAAGCAAAAGTATGCCGCTCATCCGCAG
ATCAAGCGCATCGCGCGCCATCGCCAGGTGCCGCGTCACGTGCTCAATGC
ACAGAAGAAGATGCGCACGGTCAAGGAGAAGGAGCAGGTCAAGGAGGCCA
ATGTGCGCAAGCACACCAAGAAGAGCAAGAAGGTGCCCTACGTCAGCGAG
AAAAAGAAGCATGTGCTGAAGGAGGAGGTGTGAGGATGATTGCTAACGAC
TGTAGTTGGATAAGTTTGAATAAAATTGATTTTTGTAAAAAAAAAAAAAA
AAAA

LD28275.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1618 CG7275-RA 143..1580 1..1438 7190 100 Plus
CG7275.a 1506 CG7275.a 67..1506 1..1436 7115 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15489135..15489849 113..827 3575 100 Plus
chr3L 24539361 chr3L 15489906..15490514 828..1436 3030 99.8 Plus
chr3L 24539361 chr3L 15488971..15489082 1..112 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:20:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499182..15499896 113..827 3575 100 Plus
3L 28110227 3L 15499953..15500563 828..1438 3055 100 Plus
3L 28110227 3L 15499018..15499129 1..112 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15492282..15492996 113..827 3575 100 Plus
3L 28103327 3L 15493053..15493663 828..1438 3055 100 Plus
3L 28103327 3L 15492118..15492229 1..112 560 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:25:47 has no hits.

LD28275.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:36 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15488971..15489082 1..112 100 -> Plus
chr3L 15489135..15489849 113..827 100 -> Plus
chr3L 15489906..15490514 828..1436 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:07:59 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 43..1383 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:21 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 43..1383 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:28 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 43..1383 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:51 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 43..1383 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:19 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 43..1383 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:37 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 55..1490 1..1436 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:20 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 55..1490 1..1436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:28 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 60..1495 1..1436 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:51 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 55..1490 1..1436 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:19 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 60..1495 1..1436 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:36 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15499018..15499129 1..112 100 -> Plus
3L 15499182..15499896 113..827 100 -> Plus
3L 15499953..15500561 828..1436 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:36 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15499018..15499129 1..112 100 -> Plus
3L 15499182..15499896 113..827 100 -> Plus
3L 15499953..15500561 828..1436 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:36 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15499018..15499129 1..112 100 -> Plus
3L 15499182..15499896 113..827 100 -> Plus
3L 15499953..15500561 828..1436 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:28 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492118..15492229 1..112 100 -> Plus
arm_3L 15492282..15492996 113..827 100 -> Plus
arm_3L 15493053..15493661 828..1436 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:34 Download gff for LD28275.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15492282..15492996 113..827 100 -> Plus
3L 15493053..15493661 828..1436 100   Plus
3L 15492118..15492229 1..112 100 -> Plus

LD28275.hyp Sequence

Translation from 0 to 1382

> LD28275.hyp
FYFTPQKSLINAIRMKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLE
GPREYVRALNATKLDRVFAKPFVCNLSGHRDGVSCFGKHPKQLSTLATGA
YDGEVRIWDLANRISSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVW
KAEAPEVGEDEVPVNTILSKFGLHGISHNRRDNKFATCGEVCAIWDERHN
DPLKTLKWGVDTLHTISYNPVETSILACCASDRSIILYDQREAQPLRKVV
LTMKSNKLAWNPMEAFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVT
DVDYSPTGKEFVSASYDKTIRIYNAHHSHSRDIYHTKRMQHVVCVAWSLD
NRYVFSGSDEMNVRMWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQ
IKRIARHRQVPRHVLNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSE
KKKHVLKEEV*

LD28275.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 446 CG7275-PA 1..446 15..460 2379 100 Plus
Poc1-PA 391 CG10191-PA 13..300 75..369 203 24.4 Plus
Poc1-PB 403 CG10191-PB 13..300 75..369 203 24.4 Plus
CG3436-PC 347 CG3436-PC 91..340 73..320 167 26.3 Plus
CG3436-PA 347 CG3436-PA 91..340 73..320 167 26.3 Plus

LD28275.pep Sequence

Translation from 42 to 1382

> LD28275.pep
MKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKL
DRVFAKPFVCNLSGHRDGVSCFGKHPKQLSTLATGAYDGEVRIWDLANRI
SSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVWKAEAPEVGEDEVPV
NTILSKFGLHGISHNRRDNKFATCGEVCAIWDERHNDPLKTLKWGVDTLH
TISYNPVETSILACCASDRSIILYDQREAQPLRKVVLTMKSNKLAWNPME
AFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSA
SYDKTIRIYNAHHSHSRDIYHTKRMQHVVCVAWSLDNRYVFSGSDEMNVR
MWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHV
LNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSEKKKHVLKEEV*

LD28275.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23700-PA 445 GF23700-PA 1..445 1..446 2247 91.5 Plus
Dana\GF10412-PA 403 GF10412-PA 14..300 62..355 190 23.3 Plus
Dana\GF20651-PA 698 GF20651-PA 421..655 80..312 175 25.1 Plus
Dana\GF20700-PA 347 GF20700-PA 91..342 59..308 173 25.4 Plus
Dana\GF12945-PA 1695 GF12945-PA 1232..1482 50..309 153 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15899-PA 446 GG15899-PA 1..446 1..446 2392 98.4 Plus
Dere\GG13777-PA 390 GG13777-PA 1..300 50..355 199 24 Plus
Dere\GG24701-PA 347 GG24701-PA 91..342 59..308 173 27.5 Plus
Dere\GG24716-PA 700 GG24716-PA 423..692 80..349 170 23.9 Plus
Dere\GG20967-PA 1701 GG20967-PA 1238..1488 50..309 163 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14540-PA 445 GH14540-PA 1..445 1..446 2152 88.1 Plus
Dgri\GH13949-PA 346 GH13949-PA 1..173 1..173 798 86.1 Plus
Dgri\GH13949-PA 346 GH13949-PA 183..346 282..446 770 86.1 Plus
Dgri\GH11222-PA 766 GH11222-PA 489..726 80..315 179 24.8 Plus
Dgri\GH14795-PA 404 GH14795-PA 34..301 82..355 165 23 Plus
Dgri\GH11537-PA 347 GH11537-PA 91..342 59..308 164 26 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 446 CG7275-PA 1..446 1..446 2379 100 Plus
Poc1-PA 391 CG10191-PA 13..300 61..355 203 24.4 Plus
Poc1-PB 403 CG10191-PB 13..300 61..355 203 24.4 Plus
ebi-PA 700 CG4063-PA 423..655 80..310 169 24.9 Plus
CG3436-PC 347 CG3436-PC 91..340 59..306 167 26.3 Plus
CG3436-PA 347 CG3436-PA 91..340 59..306 167 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13111-PA 445 GI13111-PA 1..445 1..446 2201 88.8 Plus
Dmoj\GI17028-PA 347 GI17028-PA 91..342 59..308 169 24.2 Plus
Dmoj\GI21646-PA 723 GI21646-PA 446..680 80..312 167 24.3 Plus
Dmoj\GI11850-PA 402 GI11850-PA 11..297 62..355 162 24.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24801-PA 445 GL24801-PA 1..445 1..446 2191 91.3 Plus
Dper\GL21559-PA 413 GL21559-PA 14..300 62..355 192 23.5 Plus
Dper\GL25365-PA 413 GL25365-PA 31..300 80..355 190 24 Plus
Dper\GL15696-PA 413 GL15696-PA 14..300 62..355 185 23.8 Plus
Dper\GL25364-PA 413 GL25364-PA 31..300 80..355 184 23.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20229-PA 445 GA20229-PA 1..445 1..446 2190 91.3 Plus
Dpse\GA10144-PA 413 GA10144-PA 14..300 62..355 184 23.8 Plus
Dpse\GA26333-PB 299 GA26333-PB 14..299 62..354 174 23.4 Plus
Dpse\GA17451-PA 347 GA17451-PA 91..342 59..308 171 25.8 Plus
Dpse\GA17928-PA 694 GA17928-PA 417..651 80..312 167 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25528-PA 446 GM25528-PA 1..446 1..446 2389 98.4 Plus
Dsec\GM24599-PA 389 GM24599-PA 14..300 62..355 202 24.7 Plus
Dsec\GM16739-PA 700 GM16739-PA 423..692 80..349 176 24 Plus
Dsec\GM16719-PA 347 GM16719-PA 91..342 59..308 169 27.2 Plus
Dsec\GM19903-PA 1701 GM19903-PA 1238..1488 50..309 158 25.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14543-PA 521 GD14543-PA 150..521 75..446 1986 98.4 Plus
Dsim\GD12669-PA 389 GD12669-PA 14..300 62..355 205 25.3 Plus
Dsim\GD23022-PA 700 GD23022-PA 423..692 80..349 176 24 Plus
Dsim\GD23005-PA 347 GD23005-PA 91..342 59..308 169 27.2 Plus
Dsim\GD25388-PA 1932 GD25388-PA 1238..1488 50..309 159 25.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13858-PA 445 GJ13858-PA 1..445 1..446 2204 89.2 Plus
Dvir\GJ13548-PA 405 GJ13548-PA 30..297 82..355 172 24 Plus
Dvir\GJ17774-PA 709 GJ17774-PA 432..666 80..312 170 24.7 Plus
Dvir\GJ24581-PA 347 GJ24581-PA 91..342 59..308 161 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20412-PA 445 GK20412-PA 1..445 1..446 2223 90.6 Plus
Dwil\GK23911-PA 347 GK23911-PA 91..342 59..308 169 25.6 Plus
Dwil\GK24403-PA 766 GK24403-PA 489..723 80..312 168 24.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23143-PA 446 GE23143-PA 1..446 1..446 2383 98.2 Plus
Dyak\GE22240-PA 446 GE22240-PA 1..446 1..446 2381 98 Plus
Dyak\GE20071-PA 391 GE20071-PA 1..300 50..355 202 24.1 Plus
Dyak\GE16626-PA 347 GE16626-PA 91..342 59..308 180 26.9 Plus
Dyak\GE16791-PA 700 GE16791-PA 423..692 80..349 170 23.9 Plus