BDGP Sequence Production Resources |
Search the DGRC for LD28419
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 284 |
Well: | 19 |
Vector: | pOT2 |
Associated Gene/Transcript | rtet-RA |
Protein status: | LD28419.pep: gold |
Preliminary Size: | 1715 |
Sequenced Size: | 1692 |
Gene | Date | Evidence |
---|---|---|
CG5760 | 2000-02-14 | Blastp of sequenced clone |
CG5806 | 2001-01-01 | Release 2 assignment |
CG5771 | 2001-01-01 | Release 2 assignment |
CG17299 | 2001-01-01 | Release 2 assignment |
CG5810 | 2001-01-01 | Release 2 assignment |
CG5802 | 2001-01-01 | Release 2 assignment |
CG10825 | 2001-01-01 | Release 2 assignment |
CG5760 | 2001-01-01 | Release 2 assignment |
CG5786 | 2001-01-01 | Release 2 assignment |
CG5793 | 2001-01-01 | Release 2 assignment |
CG5798 | 2001-01-01 | Release 2 assignment |
CG5760 | 2003-01-01 | Sim4 clustering to Release 3 |
rtet | 2008-04-29 | Release 5.5 accounting |
rtet | 2008-08-15 | Release 5.9 accounting |
rtet | 2008-12-18 | 5.12 accounting |
1692 bp (1692 high quality bases) assembled on 2000-02-14
GenBank Submission: AF181656
> LD28419.complete AGAGGGCCAAGAGTTGTCGGTGGAGTTGTGGTTCCGTTGATACAGTTATG TTGCAGTAACACCCGTACACGCACGCAATCACGGCACAAGCTAAACACCC GAAATCAGCAAAGATGGCCGACCTACGGAGTCGCCACAATGGAACCGCTG CCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAACAAC AATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAAGAG TGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTACTGG CCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTATCGC CAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCGCTG GTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTATTCG GAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGTCCG ATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCTGGC TTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCAGCA ACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAGGGC AACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAAGAC CCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCTTTA TTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAAAGT GGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGCAGT TGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCAAGG AGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAGTTG CTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCCTAA GAAAGACATTGCGGCACTGCGATCCATTGGCCTGGTATACTTCTTGTATC TCTTTCTGTATTCCGGCTTGGAGTTCACCGTCACATTTCTGATGTACCAC AAATTCGGTTACACTTCGATGGATCAGGCGAAGATGTTTTTGACAACGGG TGTAATCATGACTTTGCTGCAGGGATCGGTGGTCCGACGGCTGCCCGAGG CGAAGATCAAAGGCTATGCCATCTTCAGTTTGTACCTGATTGTACCCGCC TTCGTAGTAGTCGGCCTAGCCGAGGGCAGTCGGATGCTGTACGCCGGCAT GACCCTGTTCGCAATCTCCACAGCCTTCGCTGTCACCTGTCTGACCACCC TCGTATCCAAATACGGAAACGATGACCAGAAGGGTTCAGTACTGGGCATA TTCCGCTCACTGGGAGCTTTGGCTCGAGCTCTGGGCCCCGTGGTGGGATG CATTGCCTTCTGGTGCGTTGGCTCCAGGATCACCTATATAGCCGGCGGAC TTCTGCTCATTTATCCAGCCATGGCCTTGCAACGCGCTCGCATTTAAGTG CAATAGGAATAGAGTTTTTAAACTCACTAGAGATCAACGGAAGTATTAGC TGCACATTATACTTAATTTATCGTTTTTTACAAGTATTTTATATTAAAAT AAACACATTTTTACTCTGATTTGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rtet-RA | 1797 | rtet-RA | 124..1797 | 1..1674 | 8370 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16932364..16932920 | 1..557 | 2740 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 16933109..16933452 | 557..900 | 1705 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 16934113..16934419 | 1149..1455 | 1535 | 100 | Plus |
chr3R | 27901430 | chr3R | 16934477..16934696 | 1455..1674 | 1055 | 98.6 | Plus |
chr3R | 27901430 | chr3R | 16933880..16934059 | 972..1151 | 855 | 98.3 | Plus |
chr3R | 27901430 | chr3R | 16933513..16933588 | 898..973 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21108494..21109050 | 1..557 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 21109246..21109589 | 557..900 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 21110251..21110557 | 1149..1455 | 1535 | 100 | Plus |
3R | 32079331 | 3R | 21110615..21110836 | 1455..1676 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 21110017..21110196 | 972..1151 | 900 | 100 | Plus |
3R | 32079331 | 3R | 21109650..21109725 | 898..973 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20849325..20849881 | 1..557 | 2785 | 100 | Plus |
3R | 31820162 | 3R | 20850077..20850420 | 557..900 | 1720 | 100 | Plus |
3R | 31820162 | 3R | 20851082..20851388 | 1149..1455 | 1535 | 100 | Plus |
3R | 31820162 | 3R | 20851446..20851667 | 1455..1676 | 1110 | 100 | Plus |
3R | 31820162 | 3R | 20850848..20851027 | 972..1151 | 900 | 100 | Plus |
3R | 31820162 | 3R | 20850481..20850556 | 898..973 | 380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16932364..16932920 | 1..557 | 99 | -> | Plus |
chr3R | 16933110..16933451 | 558..899 | 99 | -> | Plus |
chr3R | 16933515..16933588 | 900..973 | 100 | -> | Plus |
chr3R | 16933882..16934057 | 974..1149 | 98 | -> | Plus |
chr3R | 16934114..16934419 | 1150..1455 | 100 | -> | Plus |
chr3R | 16934478..16934696 | 1456..1674 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 1..1434 | 114..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 1..1434 | 114..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 1..1434 | 114..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 1..1434 | 114..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 1..1434 | 114..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 47..1718 | 1..1672 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 47..1718 | 1..1672 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 49..1722 | 1..1674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 47..1718 | 1..1672 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rtet-RA | 49..1722 | 1..1674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21108494..21109050 | 1..557 | 100 | -> | Plus |
3R | 21109247..21109588 | 558..899 | 100 | -> | Plus |
3R | 21109652..21109725 | 900..973 | 100 | -> | Plus |
3R | 21110019..21110194 | 974..1149 | 100 | -> | Plus |
3R | 21110252..21110557 | 1150..1455 | 100 | -> | Plus |
3R | 21110616..21110834 | 1456..1674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21108494..21109050 | 1..557 | 100 | -> | Plus |
3R | 21109247..21109588 | 558..899 | 100 | -> | Plus |
3R | 21109652..21109725 | 900..973 | 100 | -> | Plus |
3R | 21110019..21110194 | 974..1149 | 100 | -> | Plus |
3R | 21110252..21110557 | 1150..1455 | 100 | -> | Plus |
3R | 21110616..21110834 | 1456..1674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21108494..21109050 | 1..557 | 100 | -> | Plus |
3R | 21109247..21109588 | 558..899 | 100 | -> | Plus |
3R | 21109652..21109725 | 900..973 | 100 | -> | Plus |
3R | 21110019..21110194 | 974..1149 | 100 | -> | Plus |
3R | 21110252..21110557 | 1150..1455 | 100 | -> | Plus |
3R | 21110616..21110834 | 1456..1674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16934216..16934772 | 1..557 | 100 | -> | Plus |
arm_3R | 16934969..16935310 | 558..899 | 100 | -> | Plus |
arm_3R | 16935374..16935447 | 900..973 | 100 | -> | Plus |
arm_3R | 16935741..16935916 | 974..1149 | 100 | -> | Plus |
arm_3R | 16935974..16936279 | 1150..1455 | 100 | -> | Plus |
arm_3R | 16936338..16936556 | 1456..1674 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20849325..20849881 | 1..557 | 100 | -> | Plus |
3R | 20850078..20850419 | 558..899 | 100 | -> | Plus |
3R | 20850483..20850556 | 900..973 | 100 | -> | Plus |
3R | 20850850..20851025 | 974..1149 | 100 | -> | Plus |
3R | 20851083..20851388 | 1150..1455 | 100 | -> | Plus |
3R | 20851447..20851665 | 1456..1674 | 100 | Plus |
Translation from 113 to 1546
> LD28419.pep MADLRSRHNGTAAMEKQSHSQTGSHHHNNNKALDKEASENGKPEKSDPMI YIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDSSGLYAVLTDRVRWFQQL LGAPDRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASG IALSYLIWACSSNFALFVLARFVGGISKGNISLCMSVITDVSSVKTRGRG MALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLV VLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIA ALRSIGLVYFLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMT LLQGSVVRRLPEAKIKGYAIFSLYLIVPAFVVVGLAEGSRMLYAGMTLFA ISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFW CVGSRITYIAGGLLLIYPAMALQRARI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16496-PA | 472 | GF16496-PA | 1..472 | 1..477 | 2144 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24354-PA | 476 | GG24354-PA | 1..476 | 1..477 | 2335 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18255-PA | 469 | GH18255-PA | 1..469 | 1..477 | 1958 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rtet-PA | 477 | CG5760-PA | 1..477 | 1..477 | 2409 | 100 | Plus |
CG5078-PA | 447 | CG5078-PA | 59..376 | 111..450 | 182 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23654-PA | 476 | GI23654-PA | 1..476 | 1..477 | 1912 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21785-PA | 477 | GL21785-PA | 6..477 | 5..477 | 1986 | 86.8 | Plus |
Dper\GL12795-PA | 440 | GL12795-PA | 73..380 | 125..451 | 159 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19110-PA | 477 | GA19110-PA | 1..477 | 1..477 | 1998 | 86.7 | Plus |
Dpse\GA28643-PA | 442 | GA28643-PA | 71..380 | 123..451 | 161 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15064-PA | 477 | GM15064-PA | 1..477 | 1..477 | 2465 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19396-PA | 477 | GD19396-PA | 1..477 | 1..477 | 2457 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23498-PA | 471 | GJ23498-PA | 1..471 | 1..477 | 1922 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14183-PA | 483 | GK14183-PA | 1..483 | 1..477 | 1880 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25706-PA | 476 | GE25706-PA | 1..476 | 1..477 | 2328 | 95.8 | Plus |
Translation from 113 to 1546
> LD28419.hyp MADLRSRHNGTAAMEKQSHSQTGSHHHNNNKALDKEASENGKPEKSDPMI YIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDSSGLYAVLTDRVRWFQQL LGAPDRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASG IALSYLIWACSSNFALFVLARFVGGISKGNISLCMSVITDVSSVKTRGRG MALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLV VLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIA ALRSIGLVYFLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMT LLQGSVVRRLPEAKIKGYAIFSLYLIVPAFVVVGLAEGSRMLYAGMTLFA ISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFW CVGSRITYIAGGLLLIYPAMALQRARI*