Clone LD28447 Report

Search the DGRC for LD28447

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:284
Well:47
Vector:pOT2
Associated Gene/TranscriptCG14657-RB
Protein status:LD28447.pep: gold
Preliminary Size:2505
Sequenced Size:2415

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14657 2001-01-01 Release 2 assignment
CG14657 2001-10-10 Blastp of sequenced clone
CG14657 2003-01-01 Sim4 clustering to Release 3
CG14657 2008-04-29 Release 5.5 accounting
CG14657 2008-08-15 Release 5.9 accounting
CG14657 2008-12-18 5.12 accounting

Clone Sequence Records

LD28447.complete Sequence

2415 bp (2415 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061357

> LD28447.complete
AGCTGCTTGTGAATGAAAAAAGCGTAATATCGAATCGTACAACAAATTCG
CGATAATCCACTGCCGCCCGTCCTGCAAAATCACAGATCCGCGAACTGAT
ACACAAGCGGATAAGAGAAGAGGCCAGTAGGCCAAAGCTAACCCTGCCAG
GACAAAATCGAGTCGTTCGTTCCACCGGCACACAATGGAGCTACTATAGT
GTGTGTGTGTGTGTGCGAGAGTGCGGGCGCTTGTGAGCGTGGTTGTAGTA
GTGGGCGAGTGCGTGTAGTAGTAGTACGACGAGTGTTGTGGCGACGGGGA
AAACAAAAAGAAATCTAGTTTGTGCTCAAGACTTCGGCTGGAAACCCGGC
CGCGAAGAGTGCGTAGATGTGAGGTGCGATCGCTGATGAGCCATCACCTC
TTCCCGGTGCTGGAGGCAGTGCATCCGACCGGAGAAGTTGAGGGACTCTA
GGCTAGCGGGGCAGTAATACGGCCACATCCCGTTTCCGATTCCGTAATGC
TGCTGGCCGCAGCCGGTCCACCGGCTTACGACGCCGGAAAACTGTCCAAC
AATGCCGGATCCGGATCCAGCAACGTGGGCTCCGGCGGAGTGGGTACGCC
CACGGCGTCCTCGTCGCGTCCTAGTGCCGCTAGTGCCCTGATGAAGACCC
TGTCTGTGCGCCTGCATCGAGGCACCGAGTTCATTAAGGACACCGTTCAT
AAGGCCCTGGTCATGTCCGCTCCAACGCCTGTGGCCCCAGCTACAGCTCC
TGCGCCCAAGATCGTGGACCACAGCCTAAAGCGAAAACTAAGCGGCGCTG
GCGGGCTGATGGGCTGCAGCAGCATTGGCAGCATGACCTCATCTATCGCC
GGCAGCTCGAGAAGTCACCACTATGCACTGACTAGCCAGGTGGCCTCGTC
ACAGGTGATTCCTTTGCCCAGTCAAGTGCCAACAGCCGCCTTTCTGCGCA
CCTACACTGTGGCTCCCACGGCACTCCATCGATCTGCCGCCGCTCGCAAA
CGGAATCCCAGCACCGACAGCCTGCTTATGGACCTGTGCCTCTTTAAGCC
CATTCGGCCCATGCCCATAACGCCAATAAAAATCCACAAGTTCCGCGGAT
TTGAAGTGAAGAAACCAAAATTTGTCCCCGCTGGAAATCCAGACAGCGAA
GATGATGAGGACAACGACGAAGATGGGACGGTCCGCAAGCCAAAGCCCAG
CAACTTGACATTGCCAACAATTTCGGACTCGGCCTTCGTTCCGATGCCCT
ATATAGAAACCACCAACACCGCCATTAACGCAACCACCACCACTAACAGC
GGGAGCAGATCCCGCTCTCTCAACACACACACCTCAGGCTCTGCCCAGGC
CATAACCAAGCCAAAGCGTCGTCGTCGCGCTCCCATGCTCACGGCCAAAA
GACGACGCAAGGCCCTGGATACGGAATTAACAACTTCAGCAGATGCTGGA
ACTGAAGACAAAGCTCCTGCCGTGCGCAAAGCGACGGCAGCACGCGGAGG
ATCCAAGCGCAGTCGAGGAGAATCGATTACGGCTCCTACGCCAGCGGAAC
CAATCAAATCTCCAGTAGCAATAAAAGCTCCGACCAAGCGCAAATCAACC
TCTAGAAGTGAAGCTGCAAAACGTAGTCGTGTAGCCTCTGTGCAGAATGA
CACTGTTCTCACAGCGACATCCACCACTTCAGCAGATTCAATTAGAAAAG
CCGCAACCAAGCGCATTGCTGCTAATGAAAAAGTCGCCAAGCGCAGTCGT
GGTTCCGCAGCCTTGTCTGCGCGTCCTTCCCCGCCAATGACACGTCAGCG
GGCTCGTCAGCAGATCTCCGCAAGCACCTAAGGTCTAAAAAACTTCAATA
CTCGCTCATTGGAACGTAAGCCCATATGGCAAAAGCTAGAAAAGCTAGAA
CAAAACAACACTAGGAAAGAGTCGCGTAAGAGATTCGCTAAGTTCTGAGT
CTTTGGGTTCTAGTTACTGTTTTTGTGTACGTAATACATATTTCCGTTGA
AGTAGGTGGAAATGTAAGATAAGCCAGTAATCATGTAAAGTACACGTAGT
GTTCAACTCGTTTCGTATTATTCGGGACATAATATGACTACTTAAGTTTA
AAAAAGCAACCATAATTTTTTTGGGTACACATATTACAGAATTCTGGCTT
GGTCTTCAAGACTGATATAACAAAAAGCATCCGCTACGAATAAAATATGA
TACAAAATGATATATGCAAAAGAAATTTAACCCTCATTGAGCAAAAAGTA
TTAAATGTATAAAGAAACTAGTTCATTTAAGTCATTCCTGATGTCACTGT
TTGTAAACGTATTGATATGCTAGTTTTGATCCTATTCTTTCAATGAATGT
ACAAAGTTCAACGTTTTCGGTTCGTTTAGTTTATGTGCTTGCCTTTGAAA
AAAAAAAAAAAAAAA

LD28447.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14657.a 3104 CG14657.a 65..2462 1..2398 11990 100 Plus
CG14657-RB 2787 CG14657-RB 125..2522 1..2398 11990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 644237..645435 2397..1199 5995 100 Minus
chr3R 27901430 chr3R 646029..647111 1083..1 5415 100 Minus
chr3R 27901430 chr3R 645490..645606 1200..1084 585 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4818540..4819739 2398..1199 6000 100 Minus
3R 32079331 3R 4820333..4821415 1083..1 5415 100 Minus
3R 32079331 3R 4819794..4819910 1200..1084 585 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4559371..4560570 2398..1199 6000 100 Minus
3R 31820162 3R 4561164..4562246 1083..1 5415 100 Minus
3R 31820162 3R 4560625..4560741 1200..1084 585 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:41:15 has no hits.

LD28447.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:16 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 644237..645433 1201..2397 100 <- Minus
chr3R 645490..645606 1084..1200 100 <- Minus
chr3R 646029..647111 1..1083 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:10 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 1..1335 497..1831 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:52:53 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 1..1335 497..1831 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:36 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 1..1335 497..1831 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:21:55 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 1..1335 497..1831 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:13 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 1..1335 497..1831 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:37:52 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 14..2410 1..2397 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:52:52 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 14..2410 1..2397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:36 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 18..2414 1..2397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:21:55 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 14..2410 1..2397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:13 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
CG14657-RB 18..2414 1..2397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:16 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4818541..4819737 1201..2397 100 <- Minus
3R 4819794..4819910 1084..1200 100 <- Minus
3R 4820333..4821415 1..1083 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:16 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4818541..4819737 1201..2397 100 <- Minus
3R 4819794..4819910 1084..1200 100 <- Minus
3R 4820333..4821415 1..1083 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:16 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4818541..4819737 1201..2397 100 <- Minus
3R 4819794..4819910 1084..1200 100 <- Minus
3R 4820333..4821415 1..1083 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:36 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 645516..645632 1084..1200 100 <- Minus
arm_3R 644263..645459 1201..2397 100 <- Minus
arm_3R 646055..647137 1..1083 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:58:53 Download gff for LD28447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4559372..4560568 1201..2397 100 <- Minus
3R 4560625..4560741 1084..1200 100 <- Minus
3R 4561164..4562246 1..1083 100   Minus

LD28447.pep Sequence

Translation from 496 to 1830

> LD28447.pep
MLLAAAGPPAYDAGKLSNNAGSGSSNVGSGGVGTPTASSSRPSAASALMK
TLSVRLHRGTEFIKDTVHKALVMSAPTPVAPATAPAPKIVDHSLKRKLSG
AGGLMGCSSIGSMTSSIAGSSRSHHYALTSQVASSQVIPLPSQVPTAAFL
RTYTVAPTALHRSAAARKRNPSTDSLLMDLCLFKPIRPMPITPIKIHKFR
GFEVKKPKFVPAGNPDSEDDEDNDEDGTVRKPKPSNLTLPTISDSAFVPM
PYIETTNTAINATTTTNSGSRSRSLNTHTSGSAQAITKPKRRRRAPMLTA
KRRRKALDTELTTSADAGTEDKAPAVRKATAARGGSKRSRGESITAPTPA
EPIKSPVAIKAPTKRKSTSRSEAAKRSRVASVQNDTVLTATSTTSADSIR
KAATKRIAANEKVAKRSRGSAALSARPSPPMTRQRARQQISAST*

LD28447.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16084-PA 467 GF16084-PA 1..466 1..443 967 58.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11333-PA 443 GG11333-PA 1..442 1..443 1622 87.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17407-PA 425 GH17407-PA 75..363 46..305 541 46.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14657-PC 444 CG14657-PC 1..444 1..444 2210 100 Plus
CG14657-PB 444 CG14657-PB 1..444 1..444 2210 100 Plus
CG14657-PD 196 CG14657-PD 1..196 1..196 981 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22509-PA 412 GI22509-PA 44..347 20..305 525 48.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22217-PA 476 GL22217-PA 1..470 1..444 835 51.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13152-PA 476 GA13152-PA 1..470 1..444 837 51.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10676-PA 445 GM10676-PA 1..445 1..444 1695 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19651-PA 445 GD19651-PA 1..445 1..444 1667 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10112-PA 423 GJ10112-PA 1..295 1..249 504 49.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14420-PA 434 GK14420-PA 1..331 1..307 679 53.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25327-PA 444 GE25327-PA 1..443 1..443 1529 82.6 Plus

LD28447.hyp Sequence

Translation from 496 to 1830

> LD28447.hyp
MLLAAAGPPAYDAGKLSNNAGSGSSNVGSGGVGTPTASSSRPSAASALMK
TLSVRLHRGTEFIKDTVHKALVMSAPTPVAPATAPAPKIVDHSLKRKLSG
AGGLMGCSSIGSMTSSIAGSSRSHHYALTSQVASSQVIPLPSQVPTAAFL
RTYTVAPTALHRSAAARKRNPSTDSLLMDLCLFKPIRPMPITPIKIHKFR
GFEVKKPKFVPAGNPDSEDDEDNDEDGTVRKPKPSNLTLPTISDSAFVPM
PYIETTNTAINATTTTNSGSRSRSLNTHTSGSAQAITKPKRRRRAPMLTA
KRRRKALDTELTTSADAGTEDKAPAVRKATAARGGSKRSRGESITAPTPA
EPIKSPVAIKAPTKRKSTSRSEAAKRSRVASVQNDTVLTATSTTSADSIR
KAATKRIAANEKVAKRSRGSAALSARPSPPMTRQRARQQISAST*

LD28447.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14657-PC 444 CG14657-PC 1..444 1..444 2210 100 Plus
CG14657-PB 444 CG14657-PB 1..444 1..444 2210 100 Plus
CG14657-PD 196 CG14657-PD 1..196 1..196 981 100 Plus