Clone LD28477 Report

Search the DGRC for LD28477

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:284
Well:77
Vector:pOT2
Associated Gene/TranscriptXNP-RA
Protein status:LD28477.pep: gold
Preliminary Size:4688
Sequenced Size:4813

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4548 2001-09-19 Blastp of sequenced clone
CG4548 2003-01-01 Sim4 clustering to Release 3
XNP 2008-04-29 Release 5.5 accounting
XNP 2008-08-15 Release 5.9 accounting
XNP 2008-12-18 5.12 accounting

Clone Sequence Records

LD28477.complete Sequence

4813 bp (4813 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058592

> LD28477.complete
CCCAAGTTGGAATTGCGGCGTCTTCACGCTGAAAAATAACAATTAAAGGC
TCGCAAAAAGGAGTGGATATCGAGTGGCAGGACGCGATGAAGCGGCCACA
CAACCAGTAGCAGGTGAACACAGCAGAACAAACCGATCTAGTGATATTTT
CGATGTGGAAACTAAAGTGTTTTCGGATAAATAATAGATTTAGCAGTGGT
GCCGAGCCACACACAAAAAAAAATAGAGAGAGACAGACGCAGATTGCAAA
AAAAAGGCGAAGAGAGCGAACAGAGGAAGTGCGATAGGTGGAAAGAAGAA
GAGAAAGCGAAGCGAAGAACGCGCGGCAAATGCTGACAATAAAAATATAA
TAACGAACGAAAAAAAAAGAACATTACCTTTTGCAGGCTGCAAATAAAAA
ACCAGTAACGCAACAAAATCGCATTTCTTGCAGATCTTCGACGTGCTGGG
CGGATAAACAGCCGGTTACCTATGGGAAAGAAAAACCCCAACGCCCGTCA
CACAGATGCCGCAACACCTTTGACCACAGACGACTCCAACTCCTCATCCG
TATCTCGGCGCGAATCCGCAACGGAATCCAAATCTGCATCCGAATCGGAG
TCCTCGCCTCCAAGGTCGAACACCAAGCAGTCGCGAACGCATAAAAATGT
CAAGGCATCCGGAAAGGCCACTGTTAGTAGCTCCAGTGATTCCGATCAGG
CAGTAGCAAACAGTTCAGCCAACGACGAGGAGAAGGAGCCCGTTTGCAAA
ATACGCATTGTGCCGCTGGAGAAACTGCTGGCCAGTCCCAAAACCAAGGA
GCGACCTTCGCGCGGCAGCCAACAAAAGAACGTTACGATCAACGATTCCA
GTGACGAAGAGCCTCTGAAAGGAAGTAAGCTTGTGTTGCCGGCTCGCAAA
AGTCGCAACAAGAACGCTTCTATTATAGAACTCAGCGACAGCGAGGAAGT
CGACGAAGAGGAGGAGTCATTACTGGTGGCCATTCCTTTGCCCAAAGAGG
CACAGCAGACCAAGCCAGAGAAGAATAGTAGCAAGGCAAGCAAGGAATCG
ATCGAAAAGCGGCAGAAGGCGCAGAAAGAAGCTACGACATCATCCGCCAG
GGCAATCAGAAGCGTTAACGGCACACGACGAGGATCCCTGTCCAGCGAAA
GATCGTCTAGAGCCAGCTCCTCTCGAGCAGAGTCACCGCCGAGGCCAAAA
CGTTGTGTCGTCCGCTTGAAGCGAGTCAGTCTGCCCAAAACGAAACCCGC
CCAGAAGCCAAAAAAAATGAGCTCGGATTCGGAAGAGGCGGCCACCACCT
CGAAGAAGAGCCGTCAGAGGCGCTCCAAAAGCGAAAGTGAGGCTGATTCA
GACTATGAAGCACCAGCTGCAGAGGAGGAGGAGGAGGAGGAGAGAAAGTC
GTCCGGTGATGAGGAGGAGGCGGCTAACAGCAGCGACAGCGAGGTGATGC
CCCAAAGGAAGCGGCGTCGAAAGAAGAGCGAATCCGACAAGGGCTCCTCC
GATTTTGAGCCCGAGGAGAAGCAGAAAAAGAAAGGTCGAAAACGCATCAA
GAAGACCTCAAGCGGCGAGAGCGATGGTGATGGCGATGATGACAAGCAGA
AGAACAAGCGTAAGCACATACGCAAGATCATCAAGACCAAGGATCTGGAT
CTGACGACTAAGGAGGCGGCCAAAGAGGAGGATGACAGAAGGAAGCGTAT
CGAAGATCGTCAGAAGCTCTATAACCGCATCTTTGTGAAATCCGAGAGCG
TGGAGATCAATGAACTGGTGCTAGACTTTGACGAGGAGTCGAAAAAGGCC
CTGTTGCAGGTGGACAAGGGACTGCTGAAGAAGCTGAAGCCCCATCAGGT
GGCTGGCGTTAAGTTCATGTGGGACGCGTGCTTCGAGACGCTCAAGGAGA
GCCAGGAGAAGCCCGGTTCCGGTTGCATTCTAGCCCATTGCATGGGTCTG
GGCAAGACTCTGCAGGTGGTTACCTTGTCTCACACGCTGTTGGTCAACAC
GAGGCGAACCGGTGTGGACCGCGTCCTGATCATCTCGCCACTGAGTACGG
TCAACAACTGGGCTCGGGAGTTTACCAGCTGGATGAAGTTCGCCAACCGG
AACGACATCGAGGTGTACGACATCTCACGCTATAAGGACAAGCCCACGCG
CATCTTTAAGCTCAACGAATGGTTTAACGAGGGCGGCGTCTGCATCCTCG
GCTACGACATGTACCGCATTCTGGCCAACGAGAAGGCCAAGGGTCTGCGC
AAAAAGCAGCGTGAGCAGCTAATGCAGGCCCTGGTTGATCCCGGCCCGGA
CCTGGTAGTCTGTGACGAGGGACATCTGCTCAAGAACGAGAAGACGTCCA
TTAGCAAGGCTGTCACCAGAATGCGCACAAAGCGTCGGATTGTCCTTACT
GGTACACCGCTTCAAAATAATCTCAGAGAATATTACTGCATGATCCAGTT
TGTGAAGCCGAATCTGTTGGGCACATACAAGGAGTACATGAACCGCTTCG
TCAACCCAATCACCAATGGTCAGTACACCGACTCCACGGAACGGGATCTT
CGCTTAATGAAGCACCGCTCACACATTCTGCACAAGCTGCTAGAGGGCTG
CATCCAGCGAAGGGACTACTCGGTCCTGGCGCCTTATCTGCCGCCAAAGC
ACGAGTATGTGGTCTACACGACGTTGTCGGAGCTGCAACAGAAGCTATAT
GGCTACTATATGACCACACACCGGGAACAGAGCGGCGGTGATGTGGTCGG
CAAGGGGGCCAGGCTGTTTCAGGACTTTCAAGATCTGCGGCGCATCTGGA
CGCATCCGATGAACCTGCGGGTTAACAGTGACAACGTGATTGCCAAACGG
TTGCTCAGCAACGACGACTCCGACATGGAGGGCTTTATCTGCGACGAAAC
CGACGAGGATGAGGCTGCCTCAAACTCTTCGGACAGCTGTGAGACCTTCA
AGTCGGACGCCAGTATGTCGGGATTGGCGGCCAGTTCGGGAAAGGTGAAA
AAGCGCAAGACTCGTAATGGCAACGCTGGTGGCGGTGATAGCGATTCCGA
TCTGGAGATGCTGGGCGGATTGGGTGGAGGATCCAGTGTCCAAAAGGACG
ACCCCTCGGAATGGTGGAAACCCTTTGTCGAAGAACGAGAATTGAACAAT
GTACACCATTCCCCAAAGCTACTCATCCTTTTGCGGCTACTGCAGCAGTG
CGAGGCCATTGGCGACAAGCTGCTCGTATTCTCACAGTCTCTGCAGTCCC
TGGACGTCATCGAGCACTTTCTTTCACTGGTGGACAGCAACACCAAGAAC
TACGAGTTCGAAGGTGATGTGGGTGATTTCAAGGGCTGCTGGACGAGCGG
AAAGGATTACTTCCGATTGGACGGCAGCTGCAGCGTGGAACAGCGCGAGG
CGATGTGCAAGCAGTTTAACAACATAACCAACTTGCGCGCCCGCCTGTTT
CTCATCTCCACGCGTGCCGGTGGACTCGGCATTAATCTGGTGGCCGCTAA
CAGAGTGGTCATCTTCGATGTCTCCTGGAATCCCTCGCACGACACCCAGA
GCATATTCCGAGTGTATCGCTTTGGCCAGATCAAGCCGTGCTATATTTAT
CGTCTGATTGCCATGGGCACCATGGAGCAGAAGGTGTACGAGCGCCAGGT
GGCCAAACAGGCTACGGCTAAGCGTGTGATCGACGAGCAGCAGATTTCAC
GGCACTACAATCAGACGGACCTTATGGAGCTGTACTCGTACGAGCTGAAA
CCCAGCACCGAGCGTGAGATGCCTATTCTGCCCAAGGATCGATTGTTTGC
CGAGATTCTCACCGAGCACGAGAAACTGATCTTTAAGTACCACGAGCACG
ATTCACTGCTGGAACAGGAGGAGCATGAGAATCTGACGGAGGAGGAGCGC
AAGTCGGCTTGGGCCGAGTACGAGGCGGAAAAGACGCGAACCGTACAGGC
GTCACAGTACATGAGCTACGATAGGAATGCCTTTGGCAACCAGGTGATGG
GCCAGTTTGGCAATGCCTCCGGCAGCGTGACGTCCAACAAGATCTTCGGC
TTCCGCTCGGACATATTGCTGCAGCTGCTGAACATGAAGATATCGAAGGA
TCATCAGGAGCTCAACCAGAACCAGGTCATTCAGCTGGTGCCTACCTATC
TGCAGCAACTGTACAATGAGATGAACAACGGCGATCCGACCATGTACAAG
GATCTCCTCAACCTGCACTCAAATATTGTCCATCCCAGCGGGATGTACAT
GAATCCCCTGCTCTACGCCAACCAGAATCCCAATGCCGCTGGCTACAACC
AGGGCACTGGTGGTGTTCCGCCAATGGCGGGCGGATCGGTGGCACATGGG
CCACCGGCAGCACCTGCTCCGGGCTTTGAACCGGATAAGGTATACGAGAT
CGACTAAAATACCCGAATCGAACCAATGCCGTGGTTACACCCTTTAATTT
AATCGTAGGTAATTCGTCGACTTTGTCGATATTTCCTGTGGACTAAAGTT
ACAAATGTGGTTTATCCTATCTAATTACAATTACCAATTACCCATAACCG
AGCGCATAAGATTATTTTTTCGTCAACTCAGTTAAGTTCGAAACTGTCCT
AATTCATGTGTAGACTTACATTAGATACAAGTAAAAACAACAAAATATAC
AGCATATGATTTAAATACATATTTACACGATATAGATCATGGCTATATAC
AAACAATTCTGCGTATCCGGCTAGGACAAGCAGAATTACAATTATTTAAC
ACGCGACATAAAGATAACAAAAATAAATGGCACAGATATTATAATAAAAA
AAAAAAAAAAAAA

LD28477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
XNP-RB 4819 XNP-RB 25..4819 1..4795 23975 100 Plus
XNP-RA 4528 XNP-RA 137..4505 430..4798 21845 100 Plus
XNP-RA 4528 XNP-RA 28..140 1..113 565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21303515..21305945 2431..1 12155 100 Minus
chr3R 27901430 chr3R 21300997..21302485 4795..3307 7430 99.9 Minus
chr3R 27901430 chr3R 21302533..21303416 3315..2432 4420 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25480386..25482816 2431..1 12155 100 Minus
3R 32079331 3R 25477865..25479356 4798..3307 7445 99.9 Minus
3R 32079331 3R 25479404..25480287 3315..2432 4420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25221217..25223647 2431..1 12155 100 Minus
3R 31820162 3R 25218696..25220187 4798..3307 7445 99.9 Minus
3R 31820162 3R 25220235..25221118 3315..2432 4420 100 Minus
Blast to na_te.dros performed 2019-03-16 19:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 620..785 214..376 129 57.4 Plus
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1130..1180 2223..2277 122 72.7 Plus

LD28477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:19 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21300997..21302478 3314..4795 100 <- Minus
chr3R 21302535..21303416 2432..3313 100 <- Minus
chr3R 21303515..21305945 1..2431 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:12 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 1..3936 472..4407 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:12 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 1..3936 472..4407 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:43 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RA 1..3936 472..4407 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:41 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 1..3936 472..4407 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:18 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RA 1..3936 472..4407 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:24 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 12..4806 1..4795 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:12 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 12..4806 1..4795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:43 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 1..4557 239..4795 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:41 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 12..4806 1..4795 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:18 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
XNP-RB 1..4557 239..4795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:19 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477868..25479349 3314..4795 100 <- Minus
3R 25479406..25480287 2432..3313 100 <- Minus
3R 25480386..25482816 1..2431 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:19 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477868..25479349 3314..4795 100 <- Minus
3R 25479406..25480287 2432..3313 100 <- Minus
3R 25480386..25482816 1..2431 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:19 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477868..25479349 3314..4795 100 <- Minus
3R 25479406..25480287 2432..3313 100 <- Minus
3R 25480386..25482816 1..2431 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:43 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21303590..21305071 3314..4795 100 <- Minus
arm_3R 21305128..21306009 2432..3313 100 <- Minus
arm_3R 21306108..21308538 1..2431 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:23 Download gff for LD28477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25221217..25223647 1..2431 100   Minus
3R 25218699..25220180 3314..4795 100 <- Minus
3R 25220237..25221118 2432..3313 100 <- Minus

LD28477.pep Sequence

Translation from 471 to 4406

> LD28477.pep
MGKKNPNARHTDAATPLTTDDSNSSSVSRRESATESKSASESESSPPRSN
TKQSRTHKNVKASGKATVSSSSDSDQAVANSSANDEEKEPVCKIRIVPLE
KLLASPKTKERPSRGSQQKNVTINDSSDEEPLKGSKLVLPARKSRNKNAS
IIELSDSEEVDEEEESLLVAIPLPKEAQQTKPEKNSSKASKESIEKRQKA
QKEATTSSARAIRSVNGTRRGSLSSERSSRASSSRAESPPRPKRCVVRLK
RVSLPKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAA
EEEEEEERKSSGDEEEAANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEK
QKKKGRKRIKKTSSGESDGDGDDDKQKNKRKHIRKIIKTKDLDLTTKEAA
KEEDDRRKRIEDRQKLYNRIFVKSESVEINELVLDFDEESKKALLQVDKG
LLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVV
TLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYD
ISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQL
MQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNN
LREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRS
HILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTH
REQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDS
DMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRNG
NAGGGDSDSDLEMLGGLGGGSSVQKDDPSEWWKPFVEERELNNVHHSPKL
LILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDV
GDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAG
GLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGT
MEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYSYELKPSTEREM
PILPKDRLFAEILTEHEKLIFKYHEHDSLLEQEEHENLTEEERKSAWAEY
EAEKTRTVQASQYMSYDRNAFGNQVMGQFGNASGSVTSNKIFGFRSDILL
QLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLNLHS
NIVHPSGMYMNPLLYANQNPNAAGYNQGTGGVPPMAGGSVAHGPPAAPAP
GFEPDKVYEID*

LD28477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18082-PA 1314 GF18082-PA 38..1314 55..1311 5113 79.8 Plus
Dana\GF13478-PA 1575 GF13478-PA 308..671 428..779 749 40.5 Plus
Dana\GF14336-PA 791 GF14336-PA 151..466 447..779 452 32.1 Plus
Dana\GF13478-PA 1575 GF13478-PA 919..1039 965..1087 382 51.2 Plus
Dana\GF14336-PA 791 GF14336-PA 501..676 897..1093 337 36.2 Plus
Dana\GF12812-PA 3199 GF12812-PA 1662..1809 899..1075 297 37.9 Plus
Dana\GF13400-PA 1027 GF13400-PA 419..580 884..1070 280 34.8 Plus
Dana\GF12812-PA 3199 GF12812-PA 936..1200 486..779 265 29.1 Plus
Dana\GF13400-PA 1027 GF13400-PA 127..408 454..779 244 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12244-PA 1277 GG12244-PA 1..1277 1..1311 6007 91.9 Plus
Dere\GG19952-PA 1717 GG19952-PA 405..768 428..779 754 40.5 Plus
Dere\GG19952-PA 1717 GG19952-PA 998..1178 894..1087 474 43.3 Plus
Dere\GG24469-PA 784 GG24469-PA 148..610 447..894 449 29.5 Plus
Dere\GG23998-PA 847 GG23998-PA 291..788 454..1055 385 25.5 Plus
Dere\GG24469-PA 784 GG24469-PA 494..671 893..1091 323 34.3 Plus
Dere\GG24840-PA 932 GG24840-PA 360..903 519..1067 299 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18228-PA 1336 GH18228-PA 18..1336 5..1311 4678 70.7 Plus
Dgri\GH20163-PA 1645 GH20163-PA 393..756 428..779 747 41 Plus
Dgri\GH20163-PA 1645 GH20163-PA 980..1286 897..1182 470 34.9 Plus
Dgri\GH10642-PA 786 GH10642-PA 128..457 434..779 447 33.1 Plus
Dgri\GH13563-PA 2938 GH13563-PA 583..712 610..739 409 53.1 Plus
Dgri\GH10438-PA 843 GH10438-PA 288..784 455..1055 391 25.4 Plus
Dgri\GH13563-PA 2938 GH13563-PA 398..588 364..550 334 35.8 Plus
Dgri\GH10642-PA 786 GH10642-PA 511..665 915..1091 328 35.4 Plus
Dgri\GH13563-PA 2938 GH13563-PA 729..872 1048..1191 320 45.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
XNP-PB 1311 CG4548-PB 1..1311 1..1311 6753 100 Plus
XNP-PA 1311 CG4548-PA 1..1311 1..1311 6753 100 Plus
XNP-PD 1046 CG4548-PD 1..1046 266..1311 5456 100 Plus
XNP-PC 1046 CG4548-PC 1..1046 266..1311 5456 100 Plus
CG4049-PA 1669 CG4049-PA 84..727 174..779 715 29.8 Plus
CG4049-PA 1669 CG4049-PA 957..1151 894..1100 443 41.8 Plus
okr-PA 784 CG3736-PA 148..610 447..894 433 29.1 Plus
Etl1-PA 844 CG5899-PA 4..808 205..1078 396 22.2 Plus
kis-PF 5191 CG3696-PF 1556..2316 4..779 316 21.6 Plus
kis-PE 5252 CG3696-PE 1556..2316 4..779 316 21.6 Plus
kis-PA 5322 CG3696-PA 1556..2316 4..779 316 21.6 Plus
kis-PD 5343 CG3696-PD 1556..2316 4..779 316 21.6 Plus
kis-PC 5517 CG3696-PC 1556..2316 4..779 316 21.6 Plus
okr-PA 784 CG3736-PA 494..671 893..1091 311 34.3 Plus
lds-PA 1061 CG2684-PA 2..1059 32..1088 306 21 Plus
dom-PE 2497 CG9696-PE 1659..1915 899..1172 285 29.8 Plus
dom-PD 3183 CG9696-PD 1659..1915 899..1172 285 29.8 Plus
dom-PA 3198 CG9696-PA 1659..1915 899..1172 285 29.8 Plus
dom-PG 3233 CG9696-PG 1694..1950 899..1172 285 29.8 Plus
Ino80-PA 1638 CG31212-PA 1136..1354 878..1144 283 28.8 Plus
Iswi-PC 1027 CG8625-PC 412..604 877..1090 279 33 Plus
Iswi-PB 1027 CG8625-PB 412..604 877..1090 279 33 Plus
Iswi-PA 1027 CG8625-PA 412..604 877..1090 279 33 Plus
dom-PE 2497 CG9696-PE 705..1200 254..779 278 25 Plus
dom-PD 3183 CG9696-PD 705..1200 254..779 278 25 Plus
dom-PA 3198 CG9696-PA 705..1200 254..779 278 25 Plus
dom-PG 3233 CG9696-PG 740..1235 254..779 278 25 Plus
Iswi-PC 1027 CG8625-PC 10..408 346..779 268 23.6 Plus
Iswi-PB 1027 CG8625-PB 10..408 346..779 268 23.6 Plus
Iswi-PA 1027 CG8625-PA 10..408 346..779 268 23.6 Plus
CG10445-PE 944 CG10445-PE 240..921 390..1073 265 23 Plus
CG10445-PD 945 CG10445-PD 241..922 390..1073 265 23 Plus
CG10445-PC 945 CG10445-PC 241..922 390..1073 265 23 Plus
brm-PD 1634 CG5942-PD 690..1064 366..779 258 25.9 Plus
brm-PC 1634 CG5942-PC 690..1064 366..779 258 25.9 Plus
brm-PB 1638 CG5942-PB 694..1068 366..779 258 25.9 Plus
brm-PA 1638 CG5942-PA 694..1068 366..779 258 25.9 Plus
brm-PF 1642 CG5942-PF 698..1072 366..779 258 25.9 Plus
brm-PE 1658 CG5942-PE 694..1068 366..779 258 25.9 Plus
Chd3-PA 892 CG9594-PA 585..725 897..1062 257 38.6 Plus
Mi-2-PD 1973 CG8103-PD 552..1015 261..779 256 23.1 Plus
Mi-2-PC 1982 CG8103-PC 561..1024 261..779 256 23.1 Plus
Mi-2-PA 1982 CG8103-PA 561..1024 261..779 256 23.1 Plus
Mi-2-PB 1983 CG8103-PB 562..1025 261..779 256 23.1 Plus
Mi-2-PD 1973 CG8103-PD 1044..1276 899..1136 249 28.5 Plus
Mi-2-PC 1982 CG8103-PC 1053..1285 899..1136 249 28.5 Plus
Mi-2-PA 1982 CG8103-PA 1053..1285 899..1136 249 28.5 Plus
Mi-2-PB 1983 CG8103-PB 1054..1286 899..1136 249 28.5 Plus
Chd1-PC 1881 CG3733-PC 835..1097 897..1190 249 30.6 Plus
Chd1-PA 1883 CG3733-PA 835..1097 897..1190 249 30.6 Plus
Chd1-PB 1900 CG3733-PB 852..1114 897..1190 249 30.6 Plus
Chd3-PA 892 CG9594-PA 266..558 454..779 243 25.7 Plus
Hel89B-PC 1923 CG4261-PC 1349..1684 454..801 240 25.5 Plus
Hel89B-PB 1923 CG4261-PB 1349..1684 454..801 240 25.5 Plus
kis-PF 5191 CG3696-PF 2336..2499 876..1070 236 30.8 Plus
kis-PE 5252 CG3696-PE 2336..2499 876..1070 236 30.8 Plus
kis-PA 5322 CG3696-PA 2336..2499 876..1070 236 30.8 Plus
kis-PD 5343 CG3696-PD 2336..2499 876..1070 236 30.8 Plus
kis-PC 5517 CG3696-PC 2336..2499 876..1070 236 30.8 Plus
brm-PD 1634 CG5942-PD 1093..1328 897..1147 227 28.2 Plus
brm-PC 1634 CG5942-PC 1093..1328 897..1147 227 28.2 Plus
brm-PB 1638 CG5942-PB 1097..1332 897..1147 227 28.2 Plus
brm-PA 1638 CG5942-PA 1097..1332 897..1147 227 28.2 Plus
brm-PF 1642 CG5942-PF 1101..1336 897..1147 227 28.2 Plus
brm-PE 1658 CG5942-PE 1097..1332 897..1147 227 28.2 Plus
Nopp140-PF 685 CG7421-PF 67..479 31..398 218 25.9 Plus
Nopp140-PB 686 CG7421-PB 67..479 31..398 218 25.9 Plus
Nopp140-PA 720 CG7421-PA 67..479 31..398 218 25.9 Plus
Nopp140-PE 773 CG7421-PE 67..479 31..398 218 25.9 Plus
Hel89B-PC 1923 CG4261-PC 1683..1854 891..1076 217 30.6 Plus
Hel89B-PB 1923 CG4261-PB 1683..1854 891..1076 217 30.6 Plus
Nopp140-PF 685 CG7421-PF 157..537 13..404 214 22.1 Plus
Nopp140-PB 686 CG7421-PB 157..537 13..404 214 22.1 Plus
Nopp140-PA 720 CG7421-PA 157..537 13..404 214 22.1 Plus
Nopp140-PE 773 CG7421-PE 157..537 13..404 214 22.1 Plus
Chd1-PC 1881 CG3733-PC 550..789 486..764 213 29 Plus
Chd1-PA 1883 CG3733-PA 550..789 486..764 213 29 Plus
Chd1-PB 1900 CG3733-PB 567..806 486..764 213 29 Plus
SRm160-PA 954 CG11274-PA 523..905 24..406 205 25 Plus
Caf1-180-PB 1183 CG12109-PB 138..595 20..419 200 22.2 Plus
CG7971-PG 1062 CG7971-PG 204..628 9..419 198 20.4 Plus
CG7971-PA 1062 CG7971-PA 204..628 9..419 198 20.4 Plus
CG7971-PC 1107 CG7971-PC 204..628 9..419 198 20.4 Plus
CG7971-PF 1655 CG7971-PF 429..853 9..419 198 20.4 Plus
Muc68D-PB 1514 CG6004-PB 337..716 18..404 197 22.4 Plus
Caf1-180-PB 1183 CG12109-PB 227..603 5..409 191 21.4 Plus
Muc68D-PB 1514 CG6004-PB 465..849 11..405 185 21 Plus
CG7971-PG 1062 CG7971-PG 201..550 71..419 180 21 Plus
CG7971-PA 1062 CG7971-PA 201..550 71..419 180 21 Plus
CG7971-PC 1107 CG7971-PC 201..550 71..419 180 21 Plus
CG7971-PF 1655 CG7971-PF 426..775 71..419 180 21 Plus
Muc68D-PB 1514 CG6004-PB 634..1004 11..376 180 19.5 Plus
Muc68D-PB 1514 CG6004-PB 700..1083 11..404 178 20.5 Plus
Nopp140-PF 685 CG7421-PF 62..332 111..408 176 25.6 Plus
Nopp140-PB 686 CG7421-PB 62..332 111..408 176 25.6 Plus
Nopp140-PA 720 CG7421-PA 62..332 111..408 176 25.6 Plus
Nopp140-PE 773 CG7421-PE 62..332 111..408 176 25.6 Plus
CG7971-PG 1062 CG7971-PG 260..652 3..382 176 21.2 Plus
CG7971-PA 1062 CG7971-PA 260..652 3..382 176 21.2 Plus
CG7971-PC 1107 CG7971-PC 260..652 3..382 176 21.2 Plus
CG7971-PF 1655 CG7971-PF 485..877 3..382 176 21.2 Plus
Muc68D-PB 1514 CG6004-PB 290..638 19..376 167 21 Plus
Muc68D-PB 1514 CG6004-PB 866..1209 11..344 165 20.3 Plus
CG7971-PF 1655 CG7971-PF 339..635 105..415 163 21.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10182-PA 1389 GI10182-PA 87..1389 49..1311 4694 72.1 Plus
Dmoj\GI20681-PA 1457 GI20681-PA 173..537 428..779 756 40.8 Plus
Dmoj\GI19521-PA 1865 GI19521-PA 271..466 957..1153 634 57.9 Plus
Dmoj\GI20681-PA 1457 GI20681-PA 746..1060 894..1195 496 33.9 Plus
Dmoj\GI10760-PA 783 GI10760-PA 128..457 434..779 452 31.7 Plus
Dmoj\GI24344-PA 843 GI24344-PA 287..784 454..1055 387 25.4 Plus
Dmoj\GI10760-PA 783 GI10760-PA 511..665 915..1091 326 36 Plus
Dmoj\GI19521-PA 1865 GI19521-PA 11..121 396..509 248 44.3 Plus
Dmoj\GI19521-PA 1865 GI19521-PA 115..231 653..773 246 39.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12501-PA 1502 GL12501-PA 504..1502 320..1311 4460 87 Plus
Dper\GL10420-PA 1641 GL10420-PA 296..680 402..779 759 39.8 Plus
Dper\GL10420-PA 1641 GL10420-PA 921..1101 894..1087 474 43.3 Plus
Dper\GL26701-PA 782 GL26701-PA 144..460 447..779 450 33.4 Plus
Dper\GL18989-PA 168 GL18989-PA 1..126 978..1120 324 48.6 Plus
Dper\GL26701-PA 782 GL26701-PA 492..669 893..1091 317 34.8 Plus
Dper\GL16841-PA 2139 GL16841-PA 594..741 899..1075 286 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18248-PA 1506 GA18248-PA 508..1506 320..1311 4455 86.9 Plus
Dpse\GA24365-PA 1651 GA24365-PA 296..680 402..779 760 39.8 Plus
Dpse\GA24365-PA 1651 GA24365-PA 921..1101 894..1087 474 43.3 Plus
Dpse\GA17651-PA 782 GA17651-PA 144..460 447..779 450 33.4 Plus
Dpse\GA27713-PA 163 GA27713-PA 1..100 978..1095 321 54.2 Plus
Dpse\GA17651-PA 782 GA17651-PA 492..669 893..1091 320 34.8 Plus
Dpse\GA24314-PC 2605 GA24314-PC 1727..1874 899..1075 293 36.7 Plus
Dpse\GA24314-PC 2605 GA24314-PC 990..1259 486..784 269 28.9 Plus
Dpse\GA18248-PA 1506 GA18248-PA 1..282 1..290 162 29.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10241-PA 1308 GM10241-PA 1..1308 1..1311 6926 98 Plus
Dsec\GM18271-PA 1420 GM18271-PA 767..947 894..1087 475 43.3 Plus
Dsec\GM12170-PA 611 GM12170-PA 55..552 454..1055 368 25.4 Plus
Dsec\GM18177-PA 717 GM18177-PA 146..396 515..779 344 30.2 Plus
Dsec\GM18271-PA 1420 GM18271-PA 362..537 575..779 335 35.3 Plus
Dsec\GM18177-PA 717 GM18177-PA 427..604 893..1091 325 34.3 Plus
Dsec\GM15831-PA 2550 GM15831-PA 1666..1835 899..1091 291 33.2 Plus
Dsec\GM15831-PA 2550 GM15831-PA 944..1208 486..779 267 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18194-PA 1098 GD18194-PA 1..1093 1..1093 5738 98.1 Plus
Dsim\GD18195-PA 212 GD18195-PA 1..212 1100..1311 1165 99.1 Plus
Dsim\GD22327-PA 847 GD22327-PA 291..788 454..1055 382 25.4 Plus
Dsim\GD12001-PA 783 GD12001-PA 187..462 492..779 379 31.2 Plus
Dsim\GD12001-PA 783 GD12001-PA 493..670 893..1091 325 34.3 Plus
Dsim\GD10909-PA 1001 GD10909-PA 419..580 884..1070 282 36.4 Plus
Dsim\GD10909-PA 1001 GD10909-PA 127..408 454..779 242 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10883-PA 1315 GJ10883-PA 1..1315 1..1311 4766 72.3 Plus
Dvir\GJ20429-PA 1034 GJ20429-PA 177..538 432..779 746 41.4 Plus
Dvir\GJ22014-PA 267 GJ22014-PA 3..258 897..1153 687 51 Plus
Dvir\GJ18280-PA 786 GJ18280-PA 128..457 434..779 445 31.7 Plus
Dvir\GJ20429-PA 1034 GJ20429-PA 549..798 966..1191 383 34.1 Plus
Dvir\GJ18280-PA 786 GJ18280-PA 511..665 915..1091 316 34.8 Plus
Dvir\GJ20044-PA 3256 GJ20044-PA 1663..1810 899..1075 293 37.3 Plus
Dvir\GJ20044-PA 3256 GJ20044-PA 927..1191 486..779 266 29.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12000-PA 1352 GK12000-PA 51..1352 45..1311 4646 71.5 Plus
Dwil\GK21938-PA 1564 GK21938-PA 321..661 453..779 750 42.8 Plus
Dwil\GK21938-PA 1564 GK21938-PA 885..1206 894..1195 490 33.4 Plus
Dwil\GK15573-PA 784 GK15573-PA 145..472 447..798 471 32.9 Plus
Dwil\GK15573-PA 784 GK15573-PA 515..671 915..1093 324 35.6 Plus
Dwil\GK20897-PA 3304 GK20897-PA 1736..1883 899..1075 296 37.3 Plus
Dwil\GK13479-PA 1892 GK13479-PA 1141..1309 878..1070 288 32.1 Plus
Dwil\GK20897-PA 3304 GK20897-PA 803..1279 284..779 267 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10693-PA 1312 GE10693-PA 1..1312 1..1311 6024 93.6 Plus
Dyak\GE11484-PA 1671 GE11484-PA 354..717 428..779 751 40.5 Plus
Dyak\GE11484-PA 1671 GE11484-PA 896..1127 846..1087 475 38.2 Plus
Dyak\GE14966-PA 772 GE14966-PA 136..598 447..894 450 29.3 Plus
Dyak\GE14966-PA 772 GE14966-PA 482..659 893..1091 321 33.8 Plus
Dyak\dom-PA 3195 GE12191-PA 1665..1834 899..1091 297 33.7 Plus
Dyak\GE12485-PA 1027 GE12485-PA 419..580 884..1070 282 36.4 Plus
Dyak\dom-PA 3195 GE12191-PA 943..1207 486..779 264 28.8 Plus
Dyak\GE12485-PA 1027 GE12485-PA 127..408 454..779 253 26.5 Plus

LD28477.hyp Sequence

Translation from 471 to 4406

> LD28477.hyp
MGKKNPNARHTDAATPLTTDDSNSSSVSRRESATESKSASESESSPPRSN
TKQSRTHKNVKASGKATVSSSSDSDQAVANSSANDEEKEPVCKIRIVPLE
KLLASPKTKERPSRGSQQKNVTINDSSDEEPLKGSKLVLPARKSRNKNAS
IIELSDSEEVDEEEESLLVAIPLPKEAQQTKPEKNSSKASKESIEKRQKA
QKEATTSSARAIRSVNGTRRGSLSSERSSRASSSRAESPPRPKRCVVRLK
RVSLPKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAA
EEEEEEERKSSGDEEEAANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEK
QKKKGRKRIKKTSSGESDGDGDDDKQKNKRKHIRKIIKTKDLDLTTKEAA
KEEDDRRKRIEDRQKLYNRIFVKSESVEINELVLDFDEESKKALLQVDKG
LLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVV
TLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYD
ISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQL
MQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNN
LREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRS
HILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTH
REQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDS
DMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRNG
NAGGGDSDSDLEMLGGLGGGSSVQKDDPSEWWKPFVEERELNNVHHSPKL
LILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDV
GDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAG
GLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGT
MEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYSYELKPSTEREM
PILPKDRLFAEILTEHEKLIFKYHEHDSLLEQEEHENLTEEERKSAWAEY
EAEKTRTVQASQYMSYDRNAFGNQVMGQFGNASGSVTSNKIFGFRSDILL
QLLNMKISKDHQELNQNQVIQLVPTYLQQLYNEMNNGDPTMYKDLLNLHS
NIVHPSGMYMNPLLYANQNPNAAGYNQGTGGVPPMAGGSVAHGPPAAPAP
GFEPDKVYEID*

LD28477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
XNP-PB 1311 CG4548-PB 1..1311 1..1311 6753 100 Plus
XNP-PA 1311 CG4548-PA 1..1311 1..1311 6753 100 Plus
XNP-PD 1046 CG4548-PD 1..1046 266..1311 5456 100 Plus
XNP-PC 1046 CG4548-PC 1..1046 266..1311 5456 100 Plus
CG4049-PA 1669 CG4049-PA 84..727 174..779 715 29.8 Plus