Clone LD28490 Report

Search the DGRC for LD28490

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:284
Well:90
Vector:pOT2
Associated Gene/Transcriptsvr-RG
Protein status:LD28490.pep: gold
Sequenced Size:4977

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
svr-RB 2009-06-22 Replacement based on scoring
CG4122 2011-03-01 Transcript Validation

Clone Sequence Records

LD28490.complete Sequence

4977 bp assembled on 2009-09-04

GenBank Submission: BT099720.1

> LD28490.complete
CAACGACGACCCACGACGAACGGAGGCCCGACGGACATATAAGAAGAGAG
CGAGTTGTGTGCGGGAGAGAGCTGAGAAGAAGCGGAGGAAAAATAACTGT
TTCTCGCTCAATTCGCACGCCAGTGATAAAAACAACATAATCTCGACAAG
ATTGCAAATCGCAAGATGCCAACTCTGGGTCTCCTGTTCGCCTCCATCGG
CATTGCCGTGCTGGCGATGGGTGTGCCGCATTGCAGGGGCTACACCATCA
AGGAGGACGAATCCTTCCTGCAGCAACCGCACTATGCTAGCCAAGAGCAG
CTGGAGGACCTGTTTGCTGGCCTGGAGAAGGCGTACCCCAATCAGGCCAA
AGTCCACTTCCTTGGTCGATCTCTAGAAGGACGAAATCTGCTCGCCCTGC
AAATCTCGCGGAACACCCGGTCGCGGAATCTCCTTACACCTCCAGTAAAG
TACATAGCCAATATGCATGGAGACGAAACGGTGGGCAGGCAGCTCCTTGT
TTATATGGCACAATATCTGCTCGGTAATCACGAAAGAATCAGCGACCTGG
GCCAGCTGGTCAACAGCACCGATATCTACTTGGTGCCCACGATGAATCCA
GATGGCTATGCGTTGTCCCAGGAAGGCAACTGCGAGTCGCTGCCCAACTA
TGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCCG
ATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCAG
CCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGCT
CTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGACA
ACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGAT
CGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTAT
GAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAACG
GAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGCG
TTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATCC
GGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTGC
TGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGAT
GCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAGA
GGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTGA
CCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAGT
GCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCCT
GGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGCAACTTCCGGA
AAGTAAAGGTCGAGCGCTCTGAGCCTCCACAGAAGCTCAAGAAGCAGTTC
AATGGGTTCTTGACCCCGACTAAATACGAACACCACAACTTTACGGCAAT
GGAGAGCTATCTGAGGGCGATTAGCAGCAGCTATCCTTCCCTTACACGCC
TCTACAGCATCGGTAAAAGCGTCCAGGGTCGTGATCTTTGGGTGCTTGAG
ATTTTTGCCACGCCGGGTTCTCATGTCCCGGGGGTTCCGGAGTTCAAATA
TGTGGCAAACATGCATGGCAACGAGGTGGTGGGCAAGGAATTGCTTCTAA
TCCTCACCAAATATATGCTGGAACGCTATGGCAATGATGACAGGATTACC
AAGCTGGTGAATGGCACCCGTATGCATTTTTTGTACAGCATGAACCCCGA
TGGGTATGAGATCTCCATCGAGGGCGACAGAACCGGCGGAGTTGGAAGAG
CGAATGCCCATGGAATTGATTTGAACAGAAACTTCCCCGATCAATATGGC
ACGGACCGGTTCAATAAGGTGACAGAGCCAGAGGTGGCTGCCGTCATGAA
CTGGACACTGTCGCTGCCGTTTGTTTTGTCCGCCAATCTCCATGGGGGCT
CCTTGGTGGCCAACTACCCCTTCGACGATAACGAAAATGATTTTAATGAT
CCGTTTATGAGACTCCGCAATTCTAGTATCAATGGCCGCAAGCCAAATCC
CACCGAGGATAATGCTCTTTTCAAACACCTCGCCGGGATTTATTCAAACG
CACACCCCACTATGTACCTGGGCCAGCCATGTGAGCTCTTCCAGAATGAA
TTCTTCCCTGATGGCATTACGAATGGTGCTCAATGGTATAGTGTTACTGG
GGGAATGCAGGACTGGAACTATGTGCGGGCTGGATGCCTGGAGCTAACCA
TCGAAATGGGTTGCGATAAGTTTCCCAAGGCCGCCGAGCTTTCGCGATAC
TGGGAGGATCATCGCGAGCCTCTGCTACAGTTTATCGAGCAAGTGCATTG
CGGCATTCATGGATTTGTGCATAGCACCATTGGTACGCCGATTGCGGGAG
CTGTTGTTCGTTTGGATGGAGCCAATCATTCGACCTACAGTCAAGTCTTC
GGTGACTATTGGAAGCTAGCGCTGCCTGGTCGACACAATCTCACTGTGTT
GGGGGACAACTATGCGCCACTACGAATGGAAGTTGAAGTACCCGACGTCC
ACCCCTTCGAAATGCGAATGGATATCACCCTCATGCCAGACGATCCCCAG
CATTGGGCATCCGCCAATGACTTTAGGATTATTGAAAACGTAGTCAACAC
AAGGTATCACACTAACCCTCAAGTTCGCGCACGCCTGGCGGAGCTGGAGA
ACCAAAATGGACAGATTGCCAGCTTTGGATATGCCGATTCTGAATTTGGC
ACAATCTTCAATTACCTCAAAATGACATCTGATATTGGCGAGCCCGAGGA
ACACAAGTACAAGCTGTTGGTGGTCAGTTCCCTATACGATACAACGGCTC
CTCTGGGAAGGGAAATTTTGCTCAACCTGATACGACACTTGGTCGAAGGA
TTTAAGCTGCAGGACACGTCTGTAGTCGAGTTGCTTAAACGAAGTGTTAT
CTACTTCCTGCCGCAGACTAGCAAGTTCCAAAATGTCTTTGACATGTACA
ACAGCAACACCTCCATTTGCGACCCAGTCCTGGGGGATGAGTTAGCAGAG
CGCATTCTTGGCCCGGAGACAGACCAGGCCAAGGACGTATTCCTGCAATT
TTTGCGTAGCGAACGCTTTGATTTGATGCTTACCTTTGGAGCAGGCAACT
CCGACTTGAACTATCCGAAAGGGGACTCGGTGCTAGTGAAGTTTGCCCAC
AGAATGCAGCGAACGGAGTTCAACTACTCGCCCCTGCAGTGCCCTCCATC
GGCCACGAGACAGCTCCACCGGGAGACCACCGAGAGATTGACCAATATGA
TGTACCGCATATACAATTTGCCCGTTTACACCTTGGGCATTTCCTGCTGC
CGCATGCCGCACCAAAAGAAAATCGCTTCCGTTTGGCGCAAAAACATCGA
TAAGATTAAGAACTTTTTGGCTCTAGTGAAAACCGGAGTAAGTGGCTTGG
TGCAGAACGATAAAGGACAACCATTGAGGGAGGCCTATGTCCGATTGTTG
GAGCACGATAGAATCATTAATGTTACCAAGAATGTGGCGAGATTCCAGTT
GATGCTGCCCCATGGTCTTTATGGCTTGGAGGTAACTGCTCCCAACTACG
AGTCGCAAATGATTAAGGTGGACGTAGAAGATGGTCGAGTCACGGAATTG
GGCATTATACGCATGCATCCATTCACGTTGATTCGTGGCGTTGTCCTGGA
GCTGCCAAATAACGATAACAGAGCCACCACTAGCATTGCAGGAGTGGTGC
TGGATGAGAGCAACCACCCAGTGCGGAACGCCAAGGTCTCGGTGGTGGGG
CAGACTCAATTGAGAAACTTTACAGGCAGCATGGGACAGTATCGTATATC
GGCGGTACCCTTAGGCACCATCACTCTAAAAGTAGAGGCACCGCGGCATC
TGGAGGCCACCCGACAAATGCACCTGATTCAGGGCGGCTTGGCCACAGAG
AACGTGGTCTTTCACCTAAAAGTTAACGAGCATGTCTTTGGATTGCCTCG
CTTTTTGTTCATTTTGTGCGCCAGCGTTCTGATCATTGTTGGTGTCATCG
TCTGTGTGCTATGTGCCCAGTTTTGGTTCTATCGACGCCATCGGGGGGAT
AAGCCTTATTATAACTTCTCACTGCTGCCGCAGAGGGGTAAGGAGCAGTT
TGGCCTTGAGGACGATGATGGGGGTGATGATGGGGAAACGGAGCTCTTTC
GATCTCCCATCAAACGCGGCATGACCATACAGCCGTACTTTGATGAGGAG
CAGCTGGAGCGGATCCTGCACACGGATGACGATGACGACGACGGACCGCA
CATGGAGCCAGAACTTGATGTGGCTGACGATAGCGAAGACGACATAGTGA
TGTTGCATAACAACGGGAACAAGAGACGGCACTAGATGTTCTGATAGATG
TTCCCAATCAAACACAATCTCGAGTGACACAACCACCAGGGATCACCTAA
TCCCCGATCGACTTTAACCACACACAACATAACTGTGATTCAAAACGTTT
TCAAGAGAAACCAACGCTCTCCTTTTTTGTTATTTTTGTGTAATATCTAC
CCTTAAAAGGTGAAACACTTTATTTTTGAGTTTTAGTGTTACTGAGCTTG
CACCTAGAATGCATCACAATCGTCAGCTTTAAATAGAAAATCCTACTACC
CACTCGGCAAATCTCTCGTTCATGACCGTTTATATAGAGATATACATTTT
TATGTTCAGCCAAAAGAACTGTATGCGTAAATGTAACTTAAACTAAAGAC
TGAGAGCCTCATAATTCTAGCAAAAAAAAAACCATAACAATTTGTGAAAA
AATATTAAATCTAATCTAGCTAAAAAGAAACCGAAAATCACAGCCAACAA
CAGCAGAACAAAAAAAAAAAAAAAAAA

LD28490.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
svr-RG 5836 svr-RG 310..5267 1..4958 24790 100 Plus
svr.d 5735 svr.d 209..5166 1..4958 24790 100 Plus
svr-RB 5898 svr-RB 310..4625 1..4316 21580 100 Plus
svr-RB 5898 svr-RB 4687..5329 4316..4958 3215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 398949..400277 1555..2883 6645 100 Plus
chrX 22417052 chrX 400627..401842 3101..4316 6035 99.8 Plus
chrX 22417052 chrX 401904..402546 4316..4958 3200 99.8 Plus
chrX 22417052 chrX 394023..394644 1..622 3110 100 Plus
chrX 22417052 chrX 396322..396801 858..1337 2400 100 Plus
chrX 22417052 chrX 396017..396256 619..858 1200 100 Plus
chrX 22417052 chrX 400343..400566 2884..3107 1105 99.6 Plus
chrX 22417052 chrX 398702..398820 1438..1556 595 100 Plus
chrX 22417052 chrX 396870..396972 1337..1439 515 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 504914..506242 1555..2883 6645 100 Plus
X 23542271 X 506592..507807 3101..4316 6050 99.8 Plus
X 23542271 X 507869..508511 4316..4958 3215 100 Plus
X 23542271 X 499988..500609 1..622 3110 100 Plus
X 23542271 X 502287..502766 858..1337 2400 100 Plus
X 23542271 X 501982..502221 619..858 1200 100 Plus
X 23542271 X 506308..506531 2884..3107 1120 100 Plus
X 23542271 X 504667..504785 1438..1556 595 100 Plus
X 23542271 X 502835..502937 1337..1439 515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 513012..514340 1555..2883 6645 100 Plus
X 23527363 X 514690..515905 3101..4316 6050 99.8 Plus
X 23527363 X 515967..516609 4316..4958 3215 100 Plus
X 23527363 X 508086..508707 1..622 3110 100 Plus
X 23527363 X 510385..510864 858..1337 2400 100 Plus
X 23527363 X 510080..510319 619..858 1200 100 Plus
X 23527363 X 514406..514629 2884..3107 1120 100 Plus
X 23527363 X 512765..512883 1438..1556 595 100 Plus
X 23527363 X 510933..511035 1337..1439 515 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:48:27 has no hits.

LD28490.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:21 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 394023..394643 1..621 100 -> Plus
chrX 396020..396255 622..857 100 -> Plus
chrX 396322..396801 858..1337 100 -> Plus
chrX 396871..396971 1338..1438 100 -> Plus
chrX 398703..398820 1439..1556 100 -> Plus
chrX 398951..400277 1557..2883 100 -> Plus
chrX 400343..400566 2884..3107 99 -> Plus
chrX 400634..401841 3108..4315 99 -> Plus
chrX 401904..402546 4316..4959 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:53:40 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 1..4320 166..4485 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:10:08 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 1..4320 166..4485 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:41 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 1..4320 166..4485 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:42:27 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 1..4320 166..4485 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-04 13:11:27 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 310..5267 1..4959 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:10:08 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 310..5267 1..4959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:41 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 310..5267 1..4959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:42:27 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RG 310..5267 1..4959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:21 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
X 499988..500608 1..621 100 -> Plus
X 501985..502220 622..857 100 -> Plus
X 502287..502766 858..1337 100 -> Plus
X 502836..502936 1338..1438 100 -> Plus
X 504668..504785 1439..1556 100 -> Plus
X 504916..506242 1557..2883 100 -> Plus
X 506308..506531 2884..3107 100 -> Plus
X 506599..507806 3108..4315 100 -> Plus
X 507869..508511 4316..4959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:21 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
X 499988..500608 1..621 100 -> Plus
X 501985..502220 622..857 100 -> Plus
X 502287..502766 858..1337 100 -> Plus
X 502836..502936 1338..1438 100 -> Plus
X 504668..504785 1439..1556 100 -> Plus
X 504916..506242 1557..2883 100 -> Plus
X 506308..506531 2884..3107 100 -> Plus
X 506599..507806 3108..4315 100 -> Plus
X 507869..508511 4316..4959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:21 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
X 499988..500608 1..621 100 -> Plus
X 501985..502220 622..857 100 -> Plus
X 502287..502766 858..1337 100 -> Plus
X 502836..502936 1338..1438 100 -> Plus
X 504668..504785 1439..1556 100 -> Plus
X 504916..506242 1557..2883 100 -> Plus
X 506308..506531 2884..3107 100 -> Plus
X 506599..507806 3108..4315 100 -> Plus
X 507869..508511 4316..4959 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:41 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 394021..394641 1..621 100 -> Plus
arm_X 396018..396253 622..857 100 -> Plus
arm_X 396320..396799 858..1337 100 -> Plus
arm_X 396869..396969 1338..1438 100 -> Plus
arm_X 398701..398818 1439..1556 100 -> Plus
arm_X 398949..400275 1557..2883 100 -> Plus
arm_X 400341..400564 2884..3107 100 -> Plus
arm_X 400632..401839 3108..4315 100 -> Plus
arm_X 401902..402544 4316..4959 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:01:45 Download gff for LD28490.complete
Subject Subject Range Query Range Percent Splice Strand
X 508086..508706 1..621 100 -> Plus
X 510083..510318 622..857 100 -> Plus
X 510385..510864 858..1337 100 -> Plus
X 510934..511034 1338..1438 100 -> Plus
X 512766..512883 1439..1556 100 -> Plus
X 513014..514340 1557..2883 100 -> Plus
X 514406..514629 2884..3107 100 -> Plus
X 514697..515904 3108..4315 100 -> Plus
X 515967..516609 4316..4959 99   Plus

LD28490.pep Sequence

Translation from 165 to 4484

> LD28490.pep
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGNFRKVKVERSEPPQKLKKQFNGFLT
PTKYEHHNFTAMESYLRAISSSYPSLTRLYSIGKSVQGRDLWVLEIFATP
GSHVPGVPEFKYVANMHGNEVVGKELLLILTKYMLERYGNDDRITKLVNG
TRMHFLYSMNPDGYEISIEGDRTGGVGRANAHGIDLNRNFPDQYGTDRFN
KVTEPEVAAVMNWTLSLPFVLSANLHGGSLVANYPFDDNENDFNDPFMRL
RNSSINGRKPNPTEDNALFKHLAGIYSNAHPTMYLGQPCELFQNEFFPDG
ITNGAQWYSVTGGMQDWNYVRAGCLELTIEMGCDKFPKAAELSRYWEDHR
EPLLQFIEQVHCGIHGFVHSTIGTPIAGAVVRLDGANHSTYSQVFGDYWK
LALPGRHNLTVLGDNYAPLRMEVEVPDVHPFEMRMDITLMPDDPQHWASA
NDFRIIENVVNTRYHTNPQVRARLAELENQNGQIASFGYADSEFGTIFNY
LKMTSDIGEPEEHKYKLLVVSSLYDTTAPLGREILLNLIRHLVEGFKLQD
TSVVELLKRSVIYFLPQTSKFQNVFDMYNSNTSICDPVLGDELAERILGP
ETDQAKDVFLQFLRSERFDLMLTFGAGNSDLNYPKGDSVLVKFAHRMQRT
EFNYSPLQCPPSATRQLHRETTERLTNMMYRIYNLPVYTLGISCCRMPHQ
KKIASVWRKNIDKIKNFLALVKTGVSGLVQNDKGQPLREAYVRLLEHDRI
INVTKNVARFQLMLPHGLYGLEVTAPNYESQMIKVDVEDGRVTELGIIRM
HPFTLIRGVVLELPNNDNRATTSIAGVVLDESNHPVRNAKVSVVGQTQLR
NFTGSMGQYRISAVPLGTITLKVEAPRHLEATRQMHLIQGGLATENVVFH
LKVNEHVFGLPRFLFILCASVLIIVGVIVCVLCAQFWFYRRHRGDKPYYN
FSLLPQRGKEQFGLEDDDGGDDGETELFRSPIKRGMTIQPYFDEEQLERI
LHTDDDDDDGPHMEPELDVADDSEDDIVMLHNNGNKRRH*

LD28490.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21938-PA 1607 GF21938-PA 177..1607 12..1439 6504 82.5 Plus
Dana\GF22654-PA 488 GF22654-PA 73..446 454..841 885 43 Plus
Dana\GF22654-PA 488 GF22654-PA 75..446 40..418 791 41 Plus
Dana\GF21938-PA 1607 GF21938-PA 7..162 3..152 270 37.2 Plus
Dana\GF21938-PA 1607 GF21938-PA 59..178 469..584 197 36.7 Plus
Dana\GF10640-PA 440 GF10640-PA 145..407 39..306 187 27 Plus
Dana\GF21071-PA 447 GF21071-PA 148..294 455..605 161 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12791-PA 1589 GG12791-PA 151..1589 1..1439 7447 95.5 Plus
Dere\GG19068-PA 517 GG19068-PA 74..447 454..841 877 42.8 Plus
Dere\GG19068-PA 517 GG19068-PA 76..447 40..418 787 40.8 Plus
Dere\GG12791-PA 1589 GG12791-PA 22..150 27..152 272 41.9 Plus
Dere\GG14422-PA 440 GG14422-PA 145..395 39..295 189 26.9 Plus
Dere\GG12791-PA 1589 GG12791-PA 48..146 469..564 179 36.4 Plus
Dere\GG18471-PA 447 GG18471-PA 149..295 455..605 163 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24780-PA 1441 GH24780-PA 22..1441 25..1438 5949 77 Plus
Dgri\GH12395-PA 510 GH12395-PA 79..443 454..830 871 43.2 Plus
Dgri\GH12395-PA 510 GH12395-PA 60..450 16..416 783 39.5 Plus
Dgri\GH24779-PA 182 GH24779-PA 42..181 28..152 266 37.1 Plus
Dgri\GH24779-PA 182 GH24779-PA 64..177 466..564 188 35.3 Plus
Dgri\GH14880-PA 437 GH14880-PA 140..392 34..295 185 27.2 Plus
Dgri\GH24586-PA 440 GH24586-PA 122..293 430..605 175 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PN 1439 CG4122-PN 1..1439 1..1439 7634 100 Plus
svr-PG 1439 CG4122-PG 1..1439 1..1439 7634 100 Plus
svr-PM 1406 CG4122-PM 1..1396 1..1396 7333 99.2 Plus
svr-PB 1406 CG4122-PB 1..1396 1..1396 7333 99.2 Plus
svr-PH 1437 CG4122-PH 23..1437 28..1439 7137 94.8 Plus
svr-PI 1292 CG4122-PI 6..1292 153..1439 6851 100 Plus
svr-PD 1404 CG4122-PD 23..1394 28..1396 6836 93.9 Plus
svr-PL 435 CG4122-PL 1..425 1..425 2249 100 Plus
svr-PF 435 CG4122-PF 1..425 1..425 2249 100 Plus
svr-PJ 433 CG4122-PJ 23..423 28..425 1752 81.8 Plus
svr-PE 433 CG4122-PE 23..423 28..425 1752 81.8 Plus
CG4678-PL 474 CG4678-PL 70..443 454..841 878 42.8 Plus
CG4678-PI 513 CG4678-PI 70..443 454..841 878 42.8 Plus
CG4678-PJ 523 CG4678-PJ 70..453 454..841 875 43 Plus
CG4678-PF 479 CG4678-PF 70..448 454..841 874 43 Plus
CG4678-PD 518 CG4678-PD 70..448 454..841 874 43 Plus
CG4678-PG 488 CG4678-PG 70..457 454..841 871 42.9 Plus
CG4678-PE 527 CG4678-PE 70..457 454..841 871 42.9 Plus
CG4678-PL 474 CG4678-PL 72..443 40..418 771 40.8 Plus
CG4678-PI 513 CG4678-PI 72..443 40..418 771 40.8 Plus
CG4678-PF 479 CG4678-PF 72..448 40..418 762 40 Plus
CG4678-PD 518 CG4678-PD 72..448 40..418 762 40 Plus
CG4678-PJ 523 CG4678-PJ 72..453 40..418 761 39.7 Plus
CG4678-PG 488 CG4678-PG 72..457 40..418 754 39.1 Plus
CG4678-PE 527 CG4678-PE 72..457 40..418 754 39.1 Plus
CG4678-PK 404 CG4678-PK 3..334 496..841 749 41.3 Plus
CG4678-PK 404 CG4678-PK 15..334 92..418 714 43.5 Plus
svr-PI 1292 CG4122-PI 296..694 29..418 672 37.5 Plus
svr-PL 435 CG4122-PL 29..418 443..841 672 37.3 Plus
svr-PF 435 CG4122-PF 29..418 443..841 672 37.3 Plus
svr-PJ 433 CG4122-PJ 25..416 455..841 656 36.6 Plus
svr-PE 433 CG4122-PE 25..416 455..841 656 36.6 Plus
CG8563-PB 440 CG8563-PB 145..394 39..294 203 27.4 Plus
CG8563-PA 440 CG8563-PA 145..394 39..294 203 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15159-PA 1454 GI15159-PA 28..1454 27..1438 5739 73.1 Plus
Dmoj\GI14727-PA 437 GI14727-PA 54..418 454..830 881 43.8 Plus
Dmoj\GI14727-PA 437 GI14727-PA 56..425 40..416 791 41.3 Plus
Dmoj\GI12853-PA 445 GI12853-PA 136..400 21..295 187 27.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20387-PA 1455 GL20387-PA 6..1455 7..1439 6425 80.7 Plus
Dper\GL26857-PA 537 GL26857-PA 70..455 454..830 813 39.7 Plus
Dper\GL26857-PA 537 GL26857-PA 54..462 19..416 725 37.1 Plus
Dper\GL20386-PA 164 GL20386-PA 33..161 27..152 300 45.7 Plus
Dper\GL20386-PA 164 GL20386-PA 59..160 469..567 210 37.3 Plus
Dper\GL26374-PA 438 GL26374-PA 143..393 39..295 205 27.4 Plus
Dper\GL15222-PA 469 GL15222-PA 158..291 455..590 166 29.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29134-PA 1455 GA29134-PA 6..1455 7..1439 6488 81.6 Plus
Dpse\GA18350-PA 514 GA18350-PA 70..434 454..830 871 43.2 Plus
Dpse\GA18350-PA 514 GA18350-PA 54..441 19..416 778 39.5 Plus
Dpse\GA29125-PA 164 GA29125-PA 33..161 27..152 300 45.7 Plus
Dpse\GA29125-PA 164 GA29125-PA 59..160 469..567 209 37.3 Plus
Dpse\GA21166-PA 438 GA21166-PA 143..393 39..295 205 27.4 Plus
Dpse\GA22916-PA 451 GA22916-PA 158..291 455..590 166 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19071-PA 1371 GM19071-PA 7..1371 76..1439 6880 94.7 Plus
Dsec\GM19071-PA 1371 GM19071-PA 394..773 46..418 675 38.9 Plus
Dsec\GM13459-PA 449 GM13459-PA 70..255 454..641 503 50 Plus
Dsec\GM13459-PA 449 GM13459-PA 72..253 40..230 388 39.8 Plus
Dsec\GM14839-PA 440 GM14839-PA 145..395 39..295 200 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16509-PA 1439 GD16509-PA 1..1439 1..1439 7658 98.1 Plus
Dsim\GD17299-PA 258 GD17299-PA 70..255 454..641 505 50 Plus
Dsim\GD17299-PA 258 GD17299-PA 72..253 40..230 389 39.8 Plus
Dsim\GD24843-PA 187 GD24843-PA 14..158 697..843 355 40.8 Plus
Dsim\GD24843-PA 187 GD24843-PA 1..156 262..418 349 41.9 Plus
Dsim\GD14012-PA 440 GD14012-PA 145..395 39..295 200 28 Plus
Dsim\GD16233-PA 427 GD16233-PA 129..262 455..590 161 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14862-PA 1437 GJ14862-PA 5..1437 13..1438 6081 77.8 Plus
Dvir\GJ19439-PA 517 GJ19439-PA 53..417 454..830 880 43.8 Plus
Dvir\GJ19439-PA 517 GJ19439-PA 34..424 16..416 791 40 Plus
Dvir\GJ14861-PA 164 GJ14861-PA 29..162 22..152 264 36.6 Plus
Dvir\GJ14861-PA 164 GJ14861-PA 59..158 468..564 204 39.6 Plus
Dvir\GJ12997-PA 437 GJ12997-PA 142..392 39..295 198 27.7 Plus
Dvir\GJ14828-PA 441 GJ14828-PA 123..281 430..590 168 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16509-PA 1452 GK16509-PA 33..1445 29..1427 6009 76.5 Plus
Dwil\GK25411-PA 474 GK25411-PA 64..437 454..841 886 43.3 Plus
Dwil\GK25411-PA 474 GK25411-PA 66..437 40..418 793 41.3 Plus
Dwil\GK16508-PA 215 GK16508-PA 46..176 27..152 274 39.7 Plus
Dwil\GK17379-PA 448 GK17379-PA 153..403 39..295 210 28 Plus
Dwil\GK16508-PA 215 GK16508-PA 49..172 455..564 194 37.9 Plus
Dwil\GK25782-PA 446 GK25782-PA 95..286 398..590 177 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16618-PA 1439 GE16618-PA 1..1439 1..1439 7391 95.2 Plus
Dyak\GE17613-PA 513 GE17613-PA 72..445 454..841 877 42.8 Plus
Dyak\GE17613-PA 513 GE17613-PA 74..445 40..418 787 40.8 Plus
Dyak\GE16617-PA 153 GE16617-PA 23..151 27..152 280 42.6 Plus
Dyak\GE21613-PA 440 GE21613-PA 145..395 39..295 202 28 Plus
Dyak\GE16617-PA 153 GE16617-PA 49..147 469..564 186 37.4 Plus
Dyak\GE16788-PA 444 GE16788-PA 146..292 455..605 163 28.2 Plus

LD28490.hyp Sequence

Translation from 165 to 4484

> LD28490.hyp
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGNFRKVKVERSEPPQKLKKQFNGFLT
PTKYEHHNFTAMESYLRAISSSYPSLTRLYSIGKSVQGRDLWVLEIFATP
GSHVPGVPEFKYVANMHGNEVVGKELLLILTKYMLERYGNDDRITKLVNG
TRMHFLYSMNPDGYEISIEGDRTGGVGRANAHGIDLNRNFPDQYGTDRFN
KVTEPEVAAVMNWTLSLPFVLSANLHGGSLVANYPFDDNENDFNDPFMRL
RNSSINGRKPNPTEDNALFKHLAGIYSNAHPTMYLGQPCELFQNEFFPDG
ITNGAQWYSVTGGMQDWNYVRAGCLELTIEMGCDKFPKAAELSRYWEDHR
EPLLQFIEQVHCGIHGFVHSTIGTPIAGAVVRLDGANHSTYSQVFGDYWK
LALPGRHNLTVLGDNYAPLRMEVEVPDVHPFEMRMDITLMPDDPQHWASA
NDFRIIENVVNTRYHTNPQVRARLAELENQNGQIASFGYADSEFGTIFNY
LKMTSDIGEPEEHKYKLLVVSSLYDTTAPLGREILLNLIRHLVEGFKLQD
TSVVELLKRSVIYFLPQTSKFQNVFDMYNSNTSICDPVLGDELAERILGP
ETDQAKDVFLQFLRSERFDLMLTFGAGNSDLNYPKGDSVLVKFAHRMQRT
EFNYSPLQCPPSATRQLHRETTERLTNMMYRIYNLPVYTLGISCCRMPHQ
KKIASVWRKNIDKIKNFLALVKTGVSGLVQNDKGQPLREAYVRLLEHDRI
INVTKNVARFQLMLPHGLYGLEVTAPNYESQMIKVDVEDGRVTELGIIRM
HPFTLIRGVVLELPNNDNRATTSIAGVVLDESNHPVRNAKVSVVGQTQLR
NFTGSMGQYRISAVPLGTITLKVEAPRHLEATRQMHLIQGGLATENVVFH
LKVNEHVFGLPRFLFILCASVLIIVGVIVCVLCAQFWFYRRHRGDKPYYN
FSLLPQRGKEQFGLEDDDGGDDGETELFRSPIKRGMTIQPYFDEEQLERI
LHTDDDDDDGPHMEPELDVADDSEDDIVMLHNNGNKRRH*

LD28490.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PN 1439 CG4122-PN 1..1439 1..1439 7634 100 Plus
svr-PG 1439 CG4122-PG 1..1439 1..1439 7634 100 Plus
svr-PM 1406 CG4122-PM 1..1396 1..1396 7333 99.2 Plus
svr-PB 1406 CG4122-PB 1..1396 1..1396 7333 99.2 Plus
svr-PH 1437 CG4122-PH 23..1437 28..1439 7137 94.8 Plus