Clone LD28546 Report

Search the DGRC for LD28546

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:285
Well:46
Vector:pOT2
Associated Gene/TranscriptCG2924-RA
Protein status:LD28546.pep: gold
Preliminary Size:2814
Sequenced Size:2700

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2924 2003-01-01 Sim4 clustering to Release 3
CG2924 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LD28546.complete Sequence

2700 bp (2700 high quality bases) assembled on 2006-01-09

GenBank Submission: BT024231

> LD28546.complete
AAAAAGCTTTAATGCCCAGCACAAACCAACAAACAAACAAACGCATCAAC
AGTATAAGAAAACGATAGTAAGTCGGGAAAATCAAAGTGCAAATCTGAAC
ATAAAATAAGCAGAGTGCGAGCAAGACAGCGCATGCTGGGCGCCGCAGGA
GCTGTAGAAGAAGAAGCAGTGAGAGTGAAGTTGACTGGAAGTGGAGTGGA
AAAAGAAGAGCGAGAAGAGAGCCAGCGAAAACAACAAAGAACAACCAGTC
GACTCCAAAAATTGCCCTTTCAATCTACCTCCAAACACGAGCAAAATCCT
CATTCTAATAAAAAGCTCAATAACTAAATGAGTAAACATAATATTCACAT
AAAGACGCCCTGAAGAACAACTTAAAAACTAAAAAGGGTCATCTGGAGTG
GGCAGATAAAAGCAGCTGACGGACAAAAAAAAAAAAAAAACATTTAATCC
CATACCAGCTTTCTACGCCTGGAAGTCGCAAAGGTAGAGCTCAAGAGAGG
GGGAGCTAGCTCCCTGAAACCCCAGGAACCACAAAACTCCACTTGGACCA
CGAAATAATCATAAGCACGAAAAAACACAGACCAGACCAGTTGCCTTTTA
AGCCCGCCACAAGATGGCGTGCCTTAACACCCTGAAGCAGGAAATCAAAA
CGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTCAAT
TCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAAGCG
GTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGCCAG
TTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAAATA
CTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGGCAT
ACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCGACA
TCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCCCCC
CTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGGCGG
ACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGGATC
CCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCGCTG
GAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGTGGA
ACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACTATC
TAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATGAAG
GAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTATTC
TATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCAAGT
CTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAGGAG
AAGGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGACGTA
TCCCTTCGAGCCGCCATTTGTGCGCGTTGTCCATCCGATTATCTCAGGCG
GCTATGTGCTCATCGGTGGTGCCATCTGCATGGAATTGCTGACCAAACAG
GGCTGGAGCTCGGCATATACCGTGGAAGCGGTTATCATGCAAATTGCAGC
CACTCTCGTCAAGGGAAAGGCGCGCATCCAATTCGGGGCTACCAAAGCAC
TGACCCAGGGCCAATACAGTTTGGCTCGAGCCCAGCAGAGCTTCAAATCT
CTGGTGCAGATTCACGAAAAGAATGGATGGTTCACCCCGCCCAAGGAAGA
TGGCTAAAACAAGAGAGTCCACTGATGCACATCCTTCCTAGAGTAACGCA
TGCCAGCCTACACCAATCAACACCACTCCTCACACCGCCAAAATTAGCCT
GTCCACATCCGCCAAGCACACATCCCGCACTCACTGCCGGCTTGATCTGA
TATGTCTGATGTCTGATCTGGTCAGGACCAATATGGACGAAGCGCCCATT
TTTAAGAAGATGGCCCACACAATTACATTGCTTGCTGCGTCGATGTATGT
TTAATTGCTCCGTTGCATTCATATGTATGTAAATGCCCCACTCGTCTTTT
CTGTAGTGCGTAGTGGCCTGAAGCCGTGTAATCTGTACAGAGTCTTGGAA
ACTGGAGCTGCATATATTGGTGTAAAAGTGTCAAAAAAAAATGAGCAGCC
GAAGAGTGTAAAATGTCTATGTCTATATCTGTTATGTATATGAGTATACT
TTTAATTTAAATTGTAAATGTAGTGGCTTTGAACCTTGAAAACAGCAACC
ACAATCCCCATACACTTTACACACACCCCTAAATTGTAAATTAGTTAAGT
CGAAATGTATTCTTATTTAAGTTTAACAAATCCGTGGTATCTTAAATTTT
TCCCTTTCCCTTTAACTGGTAAGCAAGCAACACAAGGAACGGCATGTTGG
GAAAAGTTGACGCGATGTCGATCGGAATAGATATATATATCTATACATAC
ATATAATTATAATTATACATAAATATAAAGATATATATTAATATTAGTGC
GAGAGTTTAGCTTAAGCAGAATAATACAGAACGATGCGTCGAAGATGAGC
AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD28546.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-RA 2862 CG2924-RA 112..2713 1..2603 12925 99.8 Plus
CG2924-RB 2728 CG2924-RB 67..2662 7..2603 12895 99.8 Plus
CG2924.a 2800 CG2924.a 112..2153 1..2044 10165 99.9 Plus
CG2924.a 2800 CG2924.a 2154..2651 2107..2603 2450 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2158935..2159764 2603..1775 4085 99.8 Minus
chrX 22417052 chrX 2162882..2163651 776..5 3780 99.6 Minus
chrX 22417052 chrX 2160767..2161057 1180..890 1455 100 Minus
chrX 22417052 chrX 2160194..2160486 1548..1256 1450 99.7 Minus
chrX 22417052 chrX 2159982..2160133 1697..1546 745 99.3 Minus
chrX 22417052 chrX 2161121..2161241 895..775 605 100 Minus
chrX 22417052 chrX 2159823..2159902 1776..1697 400 100 Minus
chrX 22417052 chrX 2160543..2160620 1256..1179 390 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2264988..2265817 2603..1775 4100 99.9 Minus
X 23542271 X 2268937..2269706 776..5 3795 99.7 Minus
X 23542271 X 2266247..2266539 1548..1256 1465 100 Minus
X 23542271 X 2266820..2267110 1180..890 1455 100 Minus
X 23542271 X 2266035..2266186 1697..1546 760 100 Minus
X 23542271 X 2267174..2267294 895..775 605 100 Minus
X 23542271 X 2265876..2265955 1776..1697 400 100 Minus
X 23542271 X 2266596..2266673 1256..1179 390 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2273086..2273915 2603..1775 4110 99.8 Minus
X 23527363 X 2277035..2277804 776..5 3805 99.7 Minus
X 23527363 X 2274345..2274637 1548..1256 1465 100 Minus
X 23527363 X 2274918..2275208 1180..890 1455 100 Minus
X 23527363 X 2274133..2274284 1697..1546 760 100 Minus
X 23527363 X 2275272..2275392 895..775 605 100 Minus
X 23527363 X 2273974..2274053 1776..1697 400 100 Minus
X 23527363 X 2274694..2274771 1256..1179 390 100 Minus
Blast to na_te.dros performed 2019-03-16 20:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 4616..4723 1..106 138 61.1 Plus
TART-A 13424 TART-A 13424bp 8345..8432 371..458 126 63.7 Plus
1360 3409 1360 1360 3409bp 3024..3081 2287..2230 118 71.2 Minus

LD28546.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:44 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2159824..2159902 1697..1775 100 <- Minus
chrX 2159983..2160131 1548..1696 99 <- Minus
chrX 2160195..2160486 1256..1547 99 <- Minus
chrX 2160544..2160618 1181..1255 100 <- Minus
chrX 2160767..2161054 893..1180 100 <- Minus
chrX 2161124..2161240 776..892 100 <- Minus
chrX 2159062..2159763 1776..2476 99 <- Minus
chrX 2162883..2163653 1..775 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:39:40 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RB 1..1194 614..1807 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:03 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 1..1194 614..1807 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:15:09 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RC 1..1194 614..1807 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:44 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RE 1..1194 614..1807 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:11:55 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 53..2242 1..2192 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:39:40 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 53..2651 1..2600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:03 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 58..2656 1..2600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:09 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 53..2242 1..2192 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:44 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 58..2656 1..2600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:44 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
X 2268938..2269708 1..775 99   Minus
X 2264991..2265816 1776..2600 99 <- Minus
X 2265877..2265955 1697..1775 100 <- Minus
X 2266036..2266184 1548..1696 100 <- Minus
X 2266248..2266539 1256..1547 100 <- Minus
X 2266597..2266671 1181..1255 100 <- Minus
X 2266820..2267107 893..1180 100 <- Minus
X 2267177..2267293 776..892 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:44 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
X 2268938..2269708 1..775 99   Minus
X 2264991..2265816 1776..2600 99 <- Minus
X 2265877..2265955 1697..1775 100 <- Minus
X 2266036..2266184 1548..1696 100 <- Minus
X 2266248..2266539 1256..1547 100 <- Minus
X 2266597..2266671 1181..1255 100 <- Minus
X 2266820..2267107 893..1180 100 <- Minus
X 2267177..2267293 776..892 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:44 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
X 2268938..2269708 1..775 99   Minus
X 2264991..2265816 1776..2600 99 <- Minus
X 2265877..2265955 1697..1775 100 <- Minus
X 2266036..2266184 1548..1696 100 <- Minus
X 2266248..2266539 1256..1547 100 <- Minus
X 2266597..2266671 1181..1255 100 <- Minus
X 2266820..2267107 893..1180 100 <- Minus
X 2267177..2267293 776..892 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:03 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2159024..2159849 1776..2600 99 <- Minus
arm_X 2159910..2159988 1697..1775 100 <- Minus
arm_X 2160069..2160217 1548..1696 100 <- Minus
arm_X 2160281..2160572 1256..1547 100 <- Minus
arm_X 2160630..2160704 1181..1255 100 <- Minus
arm_X 2160853..2161140 893..1180 100 <- Minus
arm_X 2161210..2161326 776..892 100 <- Minus
arm_X 2162971..2163741 1..775 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:02:21 Download gff for LD28546.complete
Subject Subject Range Query Range Percent Splice Strand
X 2273975..2274053 1697..1775 100 <- Minus
X 2274134..2274282 1548..1696 100 <- Minus
X 2274346..2274637 1256..1547 100 <- Minus
X 2274695..2274769 1181..1255 100 <- Minus
X 2274918..2275205 893..1180 100 <- Minus
X 2275275..2275391 776..892 100 <- Minus
X 2273089..2273914 1776..2600 99 <- Minus
X 2277036..2277806 1..775 99   Minus

LD28546.pep Sequence

Translation from 613 to 1806

> LD28546.pep
MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH
ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE
LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN
EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT
LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV
NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP
PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK
GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG*

LD28546.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21964-PA 400 GF21964-PA 1..400 1..397 2070 97 Plus
Dana\GF24417-PA 306 GF24417-PA 114..306 206..397 476 48.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12629-PA 397 GG12629-PA 1..397 1..397 2113 99.2 Plus
Dere\GG23546-PA 298 GG23546-PA 134..298 226..397 462 50.6 Plus
Dere\GG23547-PA 205 GG23547-PA 39..205 224..397 459 50.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24254-PA 394 GH24254-PA 1..394 1..397 1960 95.2 Plus
Dgri\GH13122-PA 381 GH13122-PA 1..381 1..397 1272 61.2 Plus
Dgri\GH10576-PA 174 GH10576-PA 1..174 224..397 897 96 Plus
Dgri\GH13159-PA 308 GH13159-PA 142..308 224..397 459 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-PD 397 CG2924-PD 1..397 1..397 2068 100 Plus
CG2924-PB 397 CG2924-PB 1..397 1..397 2068 100 Plus
CG2924-PE 397 CG2924-PE 1..397 1..397 2068 100 Plus
CG2924-PA 397 CG2924-PA 1..397 1..397 2068 100 Plus
CG4502-PA 306 CG4502-PA 140..306 224..397 452 51.7 Plus
CG4502-PB 306 CG4502-PB 140..306 224..397 452 51.7 Plus
Ubc4-PC 199 CG8284-PC 5..117 223..348 148 33.8 Plus
Ubc4-PB 199 CG8284-PB 5..117 223..348 148 33.8 Plus
Ubc4-PA 199 CG8284-PA 5..117 223..348 148 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21448-PA 401 GI21448-PA 1..401 1..397 2042 95.5 Plus
Dmoj\GI17799-PA 323 GI17799-PA 159..323 226..397 472 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13385-PA 390 GL13385-PA 1..390 1..397 1999 95 Plus
Dper\GL20899-PA 389 GL20899-PA 1..389 1..397 1046 56.9 Plus
Dper\GL16225-PA 290 GL16225-PA 124..290 224..397 451 50 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15522-PA 390 GA15522-PA 1..390 1..397 1999 95 Plus
Dpse\GA28233-PA 389 GA28233-PA 1..389 1..397 1042 54.3 Plus
Dpse\GA18226-PA 290 GA18226-PA 124..290 224..397 451 50 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18895-PA 397 GM18895-PA 1..397 1..397 2118 99.5 Plus
Dsec\GM23086-PA 326 GM23086-PA 1..326 1..397 1183 65.5 Plus
Dsec\GM13615-PA 302 GM13615-PA 136..302 224..397 468 50.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16376-PA 397 GD16376-PA 1..397 1..397 2118 99.5 Plus
Dsim\GD17538-PA 397 GD17538-PA 1..397 1..397 1682 82.9 Plus
Dsim\GD22508-PA 301 GD22508-PA 135..301 224..397 475 51.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16469-PA 396 GJ16469-PA 1..396 1..397 1967 96.7 Plus
Dvir\GJ23257-PA 381 GJ23257-PA 1..381 1..397 1427 68.4 Plus
Dvir\GJ17623-PA 325 GJ17623-PA 161..325 226..397 465 51.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10301-PA 397 GK10301-PA 1..397 1..397 2064 97 Plus
Dwil\GK24734-PA 303 GK24734-PA 139..303 226..397 462 50.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16958-PA 397 GE16958-PA 1..397 1..397 2118 99.5 Plus
Dyak\GE18372-PA 303 GE18372-PA 139..303 226..397 462 50.6 Plus

LD28546.hyp Sequence

Translation from 613 to 1806

> LD28546.hyp
MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH
ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE
LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN
EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT
LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV
NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP
PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK
GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG*

LD28546.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-PD 397 CG2924-PD 1..397 1..397 2068 100 Plus
CG2924-PB 397 CG2924-PB 1..397 1..397 2068 100 Plus
CG2924-PE 397 CG2924-PE 1..397 1..397 2068 100 Plus
CG2924-PA 397 CG2924-PA 1..397 1..397 2068 100 Plus
CG4502-PA 306 CG4502-PA 140..306 224..397 452 51.7 Plus