BDGP Sequence Production Resources |
Search the DGRC for LD28546
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 285 |
Well: | 46 |
Vector: | pOT2 |
Associated Gene/Transcript | CG2924-RA |
Protein status: | LD28546.pep: gold |
Preliminary Size: | 2814 |
Sequenced Size: | 2700 |
Gene | Date | Evidence |
---|---|---|
CG2924 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2924 | 2008-04-29 | Release 5.5 accounting |
2700 bp (2700 high quality bases) assembled on 2006-01-09
GenBank Submission: BT024231
> LD28546.complete AAAAAGCTTTAATGCCCAGCACAAACCAACAAACAAACAAACGCATCAAC AGTATAAGAAAACGATAGTAAGTCGGGAAAATCAAAGTGCAAATCTGAAC ATAAAATAAGCAGAGTGCGAGCAAGACAGCGCATGCTGGGCGCCGCAGGA GCTGTAGAAGAAGAAGCAGTGAGAGTGAAGTTGACTGGAAGTGGAGTGGA AAAAGAAGAGCGAGAAGAGAGCCAGCGAAAACAACAAAGAACAACCAGTC GACTCCAAAAATTGCCCTTTCAATCTACCTCCAAACACGAGCAAAATCCT CATTCTAATAAAAAGCTCAATAACTAAATGAGTAAACATAATATTCACAT AAAGACGCCCTGAAGAACAACTTAAAAACTAAAAAGGGTCATCTGGAGTG GGCAGATAAAAGCAGCTGACGGACAAAAAAAAAAAAAAAACATTTAATCC CATACCAGCTTTCTACGCCTGGAAGTCGCAAAGGTAGAGCTCAAGAGAGG GGGAGCTAGCTCCCTGAAACCCCAGGAACCACAAAACTCCACTTGGACCA CGAAATAATCATAAGCACGAAAAAACACAGACCAGACCAGTTGCCTTTTA AGCCCGCCACAAGATGGCGTGCCTTAACACCCTGAAGCAGGAAATCAAAA CGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTCAAT TCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAAGCG GTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGCCAG TTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAAATA CTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGGCAT ACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCGACA TCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCCCCC CTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGGCGG ACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGGATC CCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCGCTG GAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGTGGA ACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACTATC TAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATGAAG GAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTATTC TATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCAAGT CTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAGGAG AAGGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGACGTA TCCCTTCGAGCCGCCATTTGTGCGCGTTGTCCATCCGATTATCTCAGGCG GCTATGTGCTCATCGGTGGTGCCATCTGCATGGAATTGCTGACCAAACAG GGCTGGAGCTCGGCATATACCGTGGAAGCGGTTATCATGCAAATTGCAGC CACTCTCGTCAAGGGAAAGGCGCGCATCCAATTCGGGGCTACCAAAGCAC TGACCCAGGGCCAATACAGTTTGGCTCGAGCCCAGCAGAGCTTCAAATCT CTGGTGCAGATTCACGAAAAGAATGGATGGTTCACCCCGCCCAAGGAAGA TGGCTAAAACAAGAGAGTCCACTGATGCACATCCTTCCTAGAGTAACGCA TGCCAGCCTACACCAATCAACACCACTCCTCACACCGCCAAAATTAGCCT GTCCACATCCGCCAAGCACACATCCCGCACTCACTGCCGGCTTGATCTGA TATGTCTGATGTCTGATCTGGTCAGGACCAATATGGACGAAGCGCCCATT TTTAAGAAGATGGCCCACACAATTACATTGCTTGCTGCGTCGATGTATGT TTAATTGCTCCGTTGCATTCATATGTATGTAAATGCCCCACTCGTCTTTT CTGTAGTGCGTAGTGGCCTGAAGCCGTGTAATCTGTACAGAGTCTTGGAA ACTGGAGCTGCATATATTGGTGTAAAAGTGTCAAAAAAAAATGAGCAGCC GAAGAGTGTAAAATGTCTATGTCTATATCTGTTATGTATATGAGTATACT TTTAATTTAAATTGTAAATGTAGTGGCTTTGAACCTTGAAAACAGCAACC ACAATCCCCATACACTTTACACACACCCCTAAATTGTAAATTAGTTAAGT CGAAATGTATTCTTATTTAAGTTTAACAAATCCGTGGTATCTTAAATTTT TCCCTTTCCCTTTAACTGGTAAGCAAGCAACACAAGGAACGGCATGTTGG GAAAAGTTGACGCGATGTCGATCGGAATAGATATATATATCTATACATAC ATATAATTATAATTATACATAAATATAAAGATATATATTAATATTAGTGC GAGAGTTTAGCTTAAGCAGAATAATACAGAACGATGCGTCGAAGATGAGC AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2924-RA | 2862 | CG2924-RA | 112..2713 | 1..2603 | 12925 | 99.8 | Plus |
CG2924-RB | 2728 | CG2924-RB | 67..2662 | 7..2603 | 12895 | 99.8 | Plus |
CG2924.a | 2800 | CG2924.a | 112..2153 | 1..2044 | 10165 | 99.9 | Plus |
CG2924.a | 2800 | CG2924.a | 2154..2651 | 2107..2603 | 2450 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2158935..2159764 | 2603..1775 | 4085 | 99.8 | Minus |
chrX | 22417052 | chrX | 2162882..2163651 | 776..5 | 3780 | 99.6 | Minus |
chrX | 22417052 | chrX | 2160767..2161057 | 1180..890 | 1455 | 100 | Minus |
chrX | 22417052 | chrX | 2160194..2160486 | 1548..1256 | 1450 | 99.7 | Minus |
chrX | 22417052 | chrX | 2159982..2160133 | 1697..1546 | 745 | 99.3 | Minus |
chrX | 22417052 | chrX | 2161121..2161241 | 895..775 | 605 | 100 | Minus |
chrX | 22417052 | chrX | 2159823..2159902 | 1776..1697 | 400 | 100 | Minus |
chrX | 22417052 | chrX | 2160543..2160620 | 1256..1179 | 390 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 2264988..2265817 | 2603..1775 | 4100 | 99.9 | Minus |
X | 23542271 | X | 2268937..2269706 | 776..5 | 3795 | 99.7 | Minus |
X | 23542271 | X | 2266247..2266539 | 1548..1256 | 1465 | 100 | Minus |
X | 23542271 | X | 2266820..2267110 | 1180..890 | 1455 | 100 | Minus |
X | 23542271 | X | 2266035..2266186 | 1697..1546 | 760 | 100 | Minus |
X | 23542271 | X | 2267174..2267294 | 895..775 | 605 | 100 | Minus |
X | 23542271 | X | 2265876..2265955 | 1776..1697 | 400 | 100 | Minus |
X | 23542271 | X | 2266596..2266673 | 1256..1179 | 390 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2273086..2273915 | 2603..1775 | 4110 | 99.8 | Minus |
X | 23527363 | X | 2277035..2277804 | 776..5 | 3805 | 99.7 | Minus |
X | 23527363 | X | 2274345..2274637 | 1548..1256 | 1465 | 100 | Minus |
X | 23527363 | X | 2274918..2275208 | 1180..890 | 1455 | 100 | Minus |
X | 23527363 | X | 2274133..2274284 | 1697..1546 | 760 | 100 | Minus |
X | 23527363 | X | 2275272..2275392 | 895..775 | 605 | 100 | Minus |
X | 23527363 | X | 2273974..2274053 | 1776..1697 | 400 | 100 | Minus |
X | 23527363 | X | 2274694..2274771 | 1256..1179 | 390 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 4616..4723 | 1..106 | 138 | 61.1 | Plus |
TART-A | 13424 | TART-A 13424bp | 8345..8432 | 371..458 | 126 | 63.7 | Plus |
1360 | 3409 | 1360 1360 3409bp | 3024..3081 | 2287..2230 | 118 | 71.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2159824..2159902 | 1697..1775 | 100 | <- | Minus |
chrX | 2159983..2160131 | 1548..1696 | 99 | <- | Minus |
chrX | 2160195..2160486 | 1256..1547 | 99 | <- | Minus |
chrX | 2160544..2160618 | 1181..1255 | 100 | <- | Minus |
chrX | 2160767..2161054 | 893..1180 | 100 | <- | Minus |
chrX | 2161124..2161240 | 776..892 | 100 | <- | Minus |
chrX | 2159062..2159763 | 1776..2476 | 99 | <- | Minus |
chrX | 2162883..2163653 | 1..775 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RB | 1..1194 | 614..1807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RA | 1..1194 | 614..1807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RC | 1..1194 | 614..1807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RE | 1..1194 | 614..1807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RA | 53..2242 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RA | 53..2651 | 1..2600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RA | 58..2656 | 1..2600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RA | 53..2242 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2924-RA | 58..2656 | 1..2600 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2268938..2269708 | 1..775 | 99 | Minus | |
X | 2264991..2265816 | 1776..2600 | 99 | <- | Minus |
X | 2265877..2265955 | 1697..1775 | 100 | <- | Minus |
X | 2266036..2266184 | 1548..1696 | 100 | <- | Minus |
X | 2266248..2266539 | 1256..1547 | 100 | <- | Minus |
X | 2266597..2266671 | 1181..1255 | 100 | <- | Minus |
X | 2266820..2267107 | 893..1180 | 100 | <- | Minus |
X | 2267177..2267293 | 776..892 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2268938..2269708 | 1..775 | 99 | Minus | |
X | 2264991..2265816 | 1776..2600 | 99 | <- | Minus |
X | 2265877..2265955 | 1697..1775 | 100 | <- | Minus |
X | 2266036..2266184 | 1548..1696 | 100 | <- | Minus |
X | 2266248..2266539 | 1256..1547 | 100 | <- | Minus |
X | 2266597..2266671 | 1181..1255 | 100 | <- | Minus |
X | 2266820..2267107 | 893..1180 | 100 | <- | Minus |
X | 2267177..2267293 | 776..892 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2268938..2269708 | 1..775 | 99 | Minus | |
X | 2264991..2265816 | 1776..2600 | 99 | <- | Minus |
X | 2265877..2265955 | 1697..1775 | 100 | <- | Minus |
X | 2266036..2266184 | 1548..1696 | 100 | <- | Minus |
X | 2266248..2266539 | 1256..1547 | 100 | <- | Minus |
X | 2266597..2266671 | 1181..1255 | 100 | <- | Minus |
X | 2266820..2267107 | 893..1180 | 100 | <- | Minus |
X | 2267177..2267293 | 776..892 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2159024..2159849 | 1776..2600 | 99 | <- | Minus |
arm_X | 2159910..2159988 | 1697..1775 | 100 | <- | Minus |
arm_X | 2160069..2160217 | 1548..1696 | 100 | <- | Minus |
arm_X | 2160281..2160572 | 1256..1547 | 100 | <- | Minus |
arm_X | 2160630..2160704 | 1181..1255 | 100 | <- | Minus |
arm_X | 2160853..2161140 | 893..1180 | 100 | <- | Minus |
arm_X | 2161210..2161326 | 776..892 | 100 | <- | Minus |
arm_X | 2162971..2163741 | 1..775 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2273975..2274053 | 1697..1775 | 100 | <- | Minus |
X | 2274134..2274282 | 1548..1696 | 100 | <- | Minus |
X | 2274346..2274637 | 1256..1547 | 100 | <- | Minus |
X | 2274695..2274769 | 1181..1255 | 100 | <- | Minus |
X | 2274918..2275205 | 893..1180 | 100 | <- | Minus |
X | 2275275..2275391 | 776..892 | 100 | <- | Minus |
X | 2273089..2273914 | 1776..2600 | 99 | <- | Minus |
X | 2277036..2277806 | 1..775 | 99 | Minus |
Translation from 613 to 1806
> LD28546.pep MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21964-PA | 400 | GF21964-PA | 1..400 | 1..397 | 2070 | 97 | Plus |
Dana\GF24417-PA | 306 | GF24417-PA | 114..306 | 206..397 | 476 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12629-PA | 397 | GG12629-PA | 1..397 | 1..397 | 2113 | 99.2 | Plus |
Dere\GG23546-PA | 298 | GG23546-PA | 134..298 | 226..397 | 462 | 50.6 | Plus |
Dere\GG23547-PA | 205 | GG23547-PA | 39..205 | 224..397 | 459 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24254-PA | 394 | GH24254-PA | 1..394 | 1..397 | 1960 | 95.2 | Plus |
Dgri\GH13122-PA | 381 | GH13122-PA | 1..381 | 1..397 | 1272 | 61.2 | Plus |
Dgri\GH10576-PA | 174 | GH10576-PA | 1..174 | 224..397 | 897 | 96 | Plus |
Dgri\GH13159-PA | 308 | GH13159-PA | 142..308 | 224..397 | 459 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2924-PD | 397 | CG2924-PD | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PB | 397 | CG2924-PB | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PE | 397 | CG2924-PE | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PA | 397 | CG2924-PA | 1..397 | 1..397 | 2068 | 100 | Plus |
CG4502-PA | 306 | CG4502-PA | 140..306 | 224..397 | 452 | 51.7 | Plus |
CG4502-PB | 306 | CG4502-PB | 140..306 | 224..397 | 452 | 51.7 | Plus |
Ubc4-PC | 199 | CG8284-PC | 5..117 | 223..348 | 148 | 33.8 | Plus |
Ubc4-PB | 199 | CG8284-PB | 5..117 | 223..348 | 148 | 33.8 | Plus |
Ubc4-PA | 199 | CG8284-PA | 5..117 | 223..348 | 148 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21448-PA | 401 | GI21448-PA | 1..401 | 1..397 | 2042 | 95.5 | Plus |
Dmoj\GI17799-PA | 323 | GI17799-PA | 159..323 | 226..397 | 472 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13385-PA | 390 | GL13385-PA | 1..390 | 1..397 | 1999 | 95 | Plus |
Dper\GL20899-PA | 389 | GL20899-PA | 1..389 | 1..397 | 1046 | 56.9 | Plus |
Dper\GL16225-PA | 290 | GL16225-PA | 124..290 | 224..397 | 451 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15522-PA | 390 | GA15522-PA | 1..390 | 1..397 | 1999 | 95 | Plus |
Dpse\GA28233-PA | 389 | GA28233-PA | 1..389 | 1..397 | 1042 | 54.3 | Plus |
Dpse\GA18226-PA | 290 | GA18226-PA | 124..290 | 224..397 | 451 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18895-PA | 397 | GM18895-PA | 1..397 | 1..397 | 2118 | 99.5 | Plus |
Dsec\GM23086-PA | 326 | GM23086-PA | 1..326 | 1..397 | 1183 | 65.5 | Plus |
Dsec\GM13615-PA | 302 | GM13615-PA | 136..302 | 224..397 | 468 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16376-PA | 397 | GD16376-PA | 1..397 | 1..397 | 2118 | 99.5 | Plus |
Dsim\GD17538-PA | 397 | GD17538-PA | 1..397 | 1..397 | 1682 | 82.9 | Plus |
Dsim\GD22508-PA | 301 | GD22508-PA | 135..301 | 224..397 | 475 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16469-PA | 396 | GJ16469-PA | 1..396 | 1..397 | 1967 | 96.7 | Plus |
Dvir\GJ23257-PA | 381 | GJ23257-PA | 1..381 | 1..397 | 1427 | 68.4 | Plus |
Dvir\GJ17623-PA | 325 | GJ17623-PA | 161..325 | 226..397 | 465 | 51.2 | Plus |
Translation from 613 to 1806
> LD28546.hyp MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2924-PD | 397 | CG2924-PD | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PB | 397 | CG2924-PB | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PE | 397 | CG2924-PE | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PA | 397 | CG2924-PA | 1..397 | 1..397 | 2068 | 100 | Plus |
CG4502-PA | 306 | CG4502-PA | 140..306 | 224..397 | 452 | 51.7 | Plus |