BDGP Sequence Production Resources |
Search the DGRC for LD28549
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 285 |
Well: | 49 |
Vector: | pOT2 |
Associated Gene/Transcript | CG10973-RB |
Protein status: | LD28549.pep: gold |
Preliminary Size: | 1083 |
Sequenced Size: | 1004 |
Gene | Date | Evidence |
---|---|---|
CG10973 | 2001-01-01 | Release 2 assignment |
CG10973 | 2001-10-10 | Blastp of sequenced clone |
CG10973 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10973 | 2008-04-29 | Release 5.5 accounting |
CG10973 | 2008-08-15 | Release 5.9 accounting |
CG10973 | 2008-12-18 | 5.12 accounting |
1004 bp (1004 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061359
> LD28549.complete ATTTCCCAAAATGACCGATCCAAACGTGCCAAGAGGAGCCCTAAGCTTGC AGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCAGAAGCA GCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTTGGCAAA TGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAGCAGCTT TGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATCGAGAGT CTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCATAACGCT GGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACACATTCGG ATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTGGCCCAG AATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTTGCCTGC ACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGTGCTCCT TGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATACGACGAG TTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAAATCCAC AAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGTTAACTT CAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTGTTTCCT GTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAAACAAGA AACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGTTAAAAC TCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAAATTATT TCCAAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTATGCAAG AAATATTTTTGACAACTTAAGTGCACATTAAAAACAAATCGATTTTTCAC GTAAATGTTAAGTTAAATAAAATGGGCTTTGAAAGTAAAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10973-RB | 1148 | CG10973-RB | 162..1148 | 1..987 | 4935 | 100 | Plus |
CG10973-RA | 1085 | CG10973-RA | 143..1079 | 51..987 | 4685 | 100 | Plus |
CG10984-RA | 2365 | CG10984-RA | 2156..2262 | 987..881 | 535 | 100 | Minus |
CG10973-RA | 1085 | CG10973-RA | 36..87 | 1..52 | 260 | 100 | Plus |
CG10984-RA | 2365 | CG10984-RA | 2322..2365 | 881..838 | 220 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12744051..12744593 | 671..129 | 2715 | 100 | Minus |
chr3L | 24539361 | chr3L | 12743779..12743990 | 881..670 | 1060 | 100 | Minus |
chr3L | 24539361 | chr3L | 12743614..12743719 | 986..881 | 530 | 100 | Minus |
chr3L | 24539361 | chr3L | 12744917..12744996 | 130..51 | 400 | 100 | Minus |
chr3L | 24539361 | chr3L | 12745052..12745103 | 52..1 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12753676..12754218 | 671..129 | 2715 | 100 | Minus |
3L | 28110227 | 3L | 12753404..12753615 | 881..670 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 12753238..12753344 | 987..881 | 535 | 100 | Minus |
3L | 28110227 | 3L | 12754542..12754621 | 130..51 | 400 | 100 | Minus |
3L | 28110227 | 3L | 12754677..12754728 | 52..1 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12746776..12747318 | 671..129 | 2715 | 100 | Minus |
3L | 28103327 | 3L | 12746504..12746715 | 881..670 | 1060 | 100 | Minus |
3L | 28103327 | 3L | 12746338..12746444 | 987..881 | 535 | 100 | Minus |
3L | 28103327 | 3L | 12747642..12747721 | 130..51 | 400 | 100 | Minus |
3L | 28103327 | 3L | 12747777..12747828 | 52..1 | 260 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 435..577 | 980..843 | 109 | 55.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12743780..12743988 | 672..880 | 100 | <- | Minus |
chr3L | 12743614..12743719 | 881..986 | 100 | <- | Minus |
chr3L | 12744051..12744591 | 131..671 | 100 | <- | Minus |
chr3L | 12744917..12744994 | 53..130 | 100 | <- | Minus |
chr3L | 12745052..12745103 | 1..52 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..921 | 11..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..921 | 11..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..921 | 11..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..921 | 11..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..921 | 11..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..986 | 1..986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..986 | 1..986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 47..1032 | 1..986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 1..986 | 1..986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10973-RB | 47..1032 | 1..986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12753239..12753344 | 881..986 | 100 | <- | Minus |
3L | 12753405..12753613 | 672..880 | 100 | <- | Minus |
3L | 12753676..12754216 | 131..671 | 100 | <- | Minus |
3L | 12754542..12754619 | 53..130 | 100 | <- | Minus |
3L | 12754677..12754728 | 1..52 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12753239..12753344 | 881..986 | 100 | <- | Minus |
3L | 12753405..12753613 | 672..880 | 100 | <- | Minus |
3L | 12753676..12754216 | 131..671 | 100 | <- | Minus |
3L | 12754542..12754619 | 53..130 | 100 | <- | Minus |
3L | 12754677..12754728 | 1..52 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12753239..12753344 | 881..986 | 100 | <- | Minus |
3L | 12753405..12753613 | 672..880 | 100 | <- | Minus |
3L | 12753676..12754216 | 131..671 | 100 | <- | Minus |
3L | 12754542..12754619 | 53..130 | 100 | <- | Minus |
3L | 12754677..12754728 | 1..52 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12746339..12746444 | 881..986 | 100 | <- | Minus |
arm_3L | 12746505..12746713 | 672..880 | 100 | <- | Minus |
arm_3L | 12746776..12747316 | 131..671 | 100 | <- | Minus |
arm_3L | 12747642..12747719 | 53..130 | 100 | <- | Minus |
arm_3L | 12747777..12747828 | 1..52 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12746505..12746713 | 672..880 | 100 | <- | Minus |
3L | 12746776..12747316 | 131..671 | 100 | <- | Minus |
3L | 12747642..12747719 | 53..130 | 100 | <- | Minus |
3L | 12747777..12747828 | 1..52 | 100 | Minus | |
3L | 12746339..12746444 | 881..986 | 100 | <- | Minus |
Translation from 0 to 930
> LD28549.hyp FPKMTDPNVPRGALSLQNVLKYTVQHHDPNPEAAPKLETPDPERAQFLAN ALNAMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITL VKLGGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPA LAKNLSHSNPNTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKST NTNVYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDDFDIKQE TTLFALSSLSRESELKLSTEKREEILSKLQQIISKNKQSETCEDMVNYAR NIFDNLSAH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10973-PB | 306 | CG10973-PB | 1..306 | 4..309 | 1530 | 100 | Plus |
Translation from 10 to 930
> LD28549.pep MTDPNVPRGALSLQNVLKYTVQHHDPNPEAAPKLETPDPERAQFLANALN AMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKL GGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAK NLSHSNPNTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTN VYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDDFDIKQETTL FALSSLSRESELKLSTEKREEILSKLQQIISKNKQSETCEDMVNYARNIF DNLSAH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10869-PA | 307 | GF10869-PA | 1..307 | 1..306 | 1119 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13807-PA | 306 | GG13807-PA | 1..306 | 1..306 | 1545 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16834-PA | 264 | GH16834-PA | 1..262 | 41..304 | 518 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10973-PB | 306 | CG10973-PB | 1..306 | 1..306 | 1530 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13055-PA | 292 | GI13055-PA | 1..290 | 13..304 | 543 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24934-PA | 308 | GL24934-PA | 1..304 | 1..303 | 893 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10680-PA | 308 | GA10680-PA | 1..304 | 1..303 | 892 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24633-PA | 306 | GM24633-PA | 1..306 | 1..306 | 1583 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12702-PA | 306 | GD12702-PA | 1..306 | 1..306 | 1583 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13802-PA | 252 | GJ13802-PA | 6..250 | 60..304 | 521 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20262-PA | 312 | GK20262-PA | 2..302 | 3..302 | 663 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20100-PA | 306 | GE20100-PA | 1..306 | 1..306 | 1467 | 93.8 | Plus |