Clone LD28592 Report

Search the DGRC for LD28592

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:285
Well:92
Vector:pOT2
Associated Gene/TranscriptCG3925-RA
Protein status:LD28592.pep: gold
Preliminary Size:2311
Sequenced Size:2089

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3925 2002-01-01 Sim4 clustering to Release 2
CG3925 2002-05-18 Blastp of sequenced clone
CG3925 2003-01-01 Sim4 clustering to Release 3
CG3925 2008-04-29 Release 5.5 accounting
CG3925 2008-08-15 Release 5.9 accounting
CG3925 2008-12-18 5.12 accounting

Clone Sequence Records

LD28592.complete Sequence

2089 bp (2089 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118943

> LD28592.complete
CGAAAAGCTCCCATCTCTTATTTTCCTTTGTCAAAATAAAAACCAAATAA
ATATATATAAAATTCACCTGCAAAACGAAGCAACAAAAGACACTGTACGG
CTCAAATGGACGAAGAGGAGAACTCAGAAATCAATTCTGTGCAAGCACGG
GATGAAGATGTGCAATTGGAGGACCAACAGTCACAGGGGCTCCAGGATCG
GCAGGTAGACGTGATAGAACAGGCTTGGAACAATGCAATGCCAGACGAGC
CGTCACCGCCGGCAGAAGATGCCTTCCAAGATCCACTGGCCACCGATGGT
GAGGGAGGGGATGCACTTGAGGCCATGGTAGAGAACGTTTTGCAGGACGA
CACAGCAAGCGAGGGCAGTCATCCCAGCAGTGACATGTCTCTGGAAAGTC
CAGGAAGTGAAGATGATTCCGATCTGGAGAGCCTGCCCCATTGGATGATT
CCGCAGAACCGACTGCGCTCCGCCGTAGACATGATGGTCTCGCAAGCCCG
CAATCGGGATGGTGGAATCGCTGCACTGCTCAGTGGGGACAACTTCCTAC
AGCGAGTGCGTAGCATGGTCTTTAGCCAGGAGCGACGGCGCAGTCGCACA
AGCGAGGAAACGAGCCAGGAGGCTGCCGAGCAGCCCGTTGATCCACCGCC
ACAGCAGCCACCTCGACCACCAATCGACATTGGCTTTGACACCAATCTGC
CAGCGGAGCATTCATACTTCGGTAATCATTTGAGTCGCGTGCCCGGAGTG
GACTACTTGGAGGTGGGCAGCGTCCATCACATGCTCATCTTCTTGCACCA
GCACATCCTCTTTCCCGGCGAGGTGCTTCCCTTCATGATCGACGGCCGAA
TGTTTGACGAGGATATGCCCGGTCTGGACGGTCTGATCTTCGGTGTAAGC
TTCCCGCGTTTGCAGCCGCCGGAGGACAACCCACACAAGTTGTATGGGGT
CACGTGTCAGATCTACGAAAGGGGCGAAAGCGGCCGAGGATTGGTGTTCT
ACAAATCACGAGCACTGCAGCGCATTGTCATCAACTGCGATGATATAAAA
GGGTCACCGCAGTACATTGCTCGCAATCCAACTAGCAAATGCTTCAGCAA
AGTCAAAATATTGCCCGAGTATTTCCTGCCCGAACCGCTCCAAACTGTTG
ACATGGGCTCGATGGCCAGATTTCGGGATATACCCTCGATGCGCGACAAG
TATCGCAGGTTCCAGCTAAGCACTACCACCTGGCCATCTGATGCCTGCCA
AGAGTATTCGTTTTCTTCAATTGTGGAGCGAGCACGCCAGAGGCTGGAGT
CCCAAAAGATAGACACAATGCCAAAATGCCCCATTCAGTTGTCCTTCTGG
TTGGTGCGTAACCTTCACCTGACCGAGAAGATGATGCGGCTTACCTTCCT
CACCGACTCGGTTAACACTCGCCTCCAATTGATCAAAAGCACGTTCAAGG
ACGAGACACTCTTCTTTTGCCGATATTGCAATAGCAGCTTGGCCCTCTGC
TCGGATCTCTTTGCCATGTCCAAACACGGTGTGCAGACACAGTATTGCAA
TCCAGAGGGCTACATCCACGAGACAAACACCGTGTACCGGGTGATATCCC
ATGCCATCGGCTACAGCGGCGAGCCGTCCACAAAGTTTAGCTGGTTCCCC
GGCTATCAGTGGCACATTATTCTGTGCAAGTTCTGCGCCCAGCACGTCGG
GTGGGAGTTCAAGGCCGTGCATCCCAACCTAACACCCAAGGTGTTTTTCG
GTTTGGCCGGCTCCAGCGTGCGGATTGGAAAAGCCAGCGAGTACTCGCCC
TTCAATGGAACCACCTATGTGGTGCGGAATATGATGCGGATGATCTCAAG
CGATATGGAATGAGGCTGGCGCGTTGTGAAGCGATTTTTCAGATGTCAAC
TCTGCTGCTGGCGTCGTCAGGAGAATGATGCGGTCCATCAGGTGGGACCT
GTTTAATTCGTTTCACAACTACTTTTAGCAAAAACACACGGCGTTTGATG
GCGTGGATGTAAACCTAATTGATATTTACGATTATTTGAATAATAAGTTA
CTCTTAAATATTTGCTTTTAAAAAAAAAAAAAAAAAAAA

LD28592.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-RA 2187 CG3925-RA 60..2130 1..2071 10355 100 Plus
CG3925.a 2225 CG3925.a 222..2168 125..2071 9735 100 Plus
CG3925.a 2225 CG3925.a 26..152 1..127 635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5875507..5876150 411..1054 3220 100 Plus
chr3R 27901430 chr3R 5876780..5877296 1553..2069 2585 100 Plus
chr3R 27901430 chr3R 5876208..5876711 1052..1555 2520 100 Plus
chr3R 27901430 chr3R 5875156..5875443 125..412 1425 99.7 Plus
chr3R 27901430 chr3R 5874960..5875086 1..127 635 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10049738..10050381 411..1054 3220 100 Plus
3R 32079331 3R 10051011..10051529 1553..2071 2595 100 Plus
3R 32079331 3R 10050439..10050942 1052..1555 2520 100 Plus
3R 32079331 3R 10049387..10049674 125..412 1440 100 Plus
3R 32079331 3R 10049191..10049317 1..127 635 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9790569..9791212 411..1054 3220 100 Plus
3R 31820162 3R 9791842..9792360 1553..2071 2595 100 Plus
3R 31820162 3R 9791270..9791773 1052..1555 2520 100 Plus
3R 31820162 3R 9790218..9790505 125..412 1440 100 Plus
3R 31820162 3R 9790022..9790148 1..127 635 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:27:09 has no hits.

LD28592.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:56 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5874960..5875086 1..127 100 -> Plus
chr3R 5875159..5875443 128..412 99 -> Plus
chr3R 5875509..5876148 413..1052 100 -> Plus
chr3R 5876209..5876711 1053..1555 100 -> Plus
chr3R 5876783..5877296 1556..2069 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:20 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..1758 106..1863 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:37 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..1758 106..1863 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:04:41 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..1758 106..1863 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:49 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..1758 106..1863 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:52 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..1758 106..1863 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:40 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 26..2094 1..2069 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:36 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 25..2093 1..2069 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:04:41 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..2061 9..2069 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:49 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 26..2094 1..2069 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:52 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 1..2061 9..2069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:56 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10049191..10049317 1..127 100 -> Plus
3R 10049390..10049674 128..412 100 -> Plus
3R 10049740..10050379 413..1052 100 -> Plus
3R 10050440..10050942 1053..1555 100 -> Plus
3R 10051014..10051527 1556..2069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:56 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10049191..10049317 1..127 100 -> Plus
3R 10049390..10049674 128..412 100 -> Plus
3R 10049740..10050379 413..1052 100 -> Plus
3R 10050440..10050942 1053..1555 100 -> Plus
3R 10051014..10051527 1556..2069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:56 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10049191..10049317 1..127 100 -> Plus
3R 10049390..10049674 128..412 100 -> Plus
3R 10049740..10050379 413..1052 100 -> Plus
3R 10050440..10050942 1053..1555 100 -> Plus
3R 10051014..10051527 1556..2069 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:04:41 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5874913..5875039 1..127 100 -> Plus
arm_3R 5875112..5875396 128..412 100 -> Plus
arm_3R 5875462..5876101 413..1052 100 -> Plus
arm_3R 5876162..5876664 1053..1555 100 -> Plus
arm_3R 5876736..5877249 1556..2069 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:11 Download gff for LD28592.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9790221..9790505 128..412 100 -> Plus
3R 9790571..9791210 413..1052 100 -> Plus
3R 9791271..9791773 1053..1555 100 -> Plus
3R 9791845..9792358 1556..2069 100   Plus
3R 9790022..9790148 1..127 100 -> Plus

LD28592.pep Sequence

Translation from 105 to 1862

> LD28592.pep
MDEEENSEINSVQARDEDVQLEDQQSQGLQDRQVDVIEQAWNNAMPDEPS
PPAEDAFQDPLATDGEGGDALEAMVENVLQDDTASEGSHPSSDMSLESPG
SEDDSDLESLPHWMIPQNRLRSAVDMMVSQARNRDGGIAALLSGDNFLQR
VRSMVFSQERRRSRTSEETSQEAAEQPVDPPPQQPPRPPIDIGFDTNLPA
EHSYFGNHLSRVPGVDYLEVGSVHHMLIFLHQHILFPGEVLPFMIDGRMF
DEDMPGLDGLIFGVSFPRLQPPEDNPHKLYGVTCQIYERGESGRGLVFYK
SRALQRIVINCDDIKGSPQYIARNPTSKCFSKVKILPEYFLPEPLQTVDM
GSMARFRDIPSMRDKYRRFQLSTTTWPSDACQEYSFSSIVERARQRLESQ
KIDTMPKCPIQLSFWLVRNLHLTEKMMRLTFLTDSVNTRLQLIKSTFKDE
TLFFCRYCNSSLALCSDLFAMSKHGVQTQYCNPEGYIHETNTVYRVISHA
IGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVHPNLTPKVFFGL
AGSSVRIGKASEYSPFNGTTYVVRNMMRMISSDME*

LD28592.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17853-PA 520 GF17853-PA 19..520 75..585 2266 81.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17313-PA 586 GG17313-PA 1..586 1..585 2783 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22576-PA 671 GH22576-PA 116..671 38..585 2098 69.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
ohgt-PA 585 CG3925-PA 1..585 1..585 3110 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23135-PA 676 GI23135-PA 155..676 73..585 2131 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27201-PA 616 GL27201-PA 1..616 1..585 2134 67.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17779-PA 616 GA17779-PA 1..616 1..585 2131 67.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23853-PA 587 GM23853-PA 1..587 1..585 2932 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18661-PA 587 GD18661-PA 1..587 1..585 2922 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10436-PA 640 GJ10436-PA 137..640 89..585 2127 75.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12054-PA 612 GK12054-PA 34..612 1..585 2074 68.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26004-PA 588 GE26004-PA 1..588 1..585 2822 91.7 Plus

LD28592.hyp Sequence

Translation from 105 to 1862

> LD28592.hyp
MDEEENSEINSVQARDEDVQLEDQQSQGLQDRQVDVIEQAWNNAMPDEPS
PPAEDAFQDPLATDGEGGDALEAMVENVLQDDTASEGSHPSSDMSLESPG
SEDDSDLESLPHWMIPQNRLRSAVDMMVSQARNRDGGIAALLSGDNFLQR
VRSMVFSQERRRSRTSEETSQEAAEQPVDPPPQQPPRPPIDIGFDTNLPA
EHSYFGNHLSRVPGVDYLEVGSVHHMLIFLHQHILFPGEVLPFMIDGRMF
DEDMPGLDGLIFGVSFPRLQPPEDNPHKLYGVTCQIYERGESGRGLVFYK
SRALQRIVINCDDIKGSPQYIARNPTSKCFSKVKILPEYFLPEPLQTVDM
GSMARFRDIPSMRDKYRRFQLSTTTWPSDACQEYSFSSIVERARQRLESQ
KIDTMPKCPIQLSFWLVRNLHLTEKMMRLTFLTDSVNTRLQLIKSTFKDE
TLFFCRYCNSSLALCSDLFAMSKHGVQTQYCNPEGYIHETNTVYRVISHA
IGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVHPNLTPKVFFGL
AGSSVRIGKASEYSPFNGTTYVVRNMMRMISSDME*

LD28592.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-PA 585 CG3925-PA 1..585 1..585 3110 100 Plus