Clone LD28626 Report

Search the DGRC for LD28626

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:286
Well:26
Vector:pOT2
Associated Gene/TranscriptCG1218-RA
Protein status:LD28626.pep: gold
Preliminary Size:1696
Sequenced Size:1492

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1218 2001-01-01 Release 2 assignment
CG1218 2001-11-29 Blastp of sequenced clone
CG1218 2003-01-01 Sim4 clustering to Release 3
CG1218 2008-04-29 Release 5.5 accounting
CG1218 2008-08-15 Release 5.9 accounting
CG1218 2008-12-18 5.12 accounting

Clone Sequence Records

LD28626.complete Sequence

1492 bp (1492 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069557

> LD28626.complete
CAAACCTCACATTTTGCAAATTTGTTTGAAATCGGTATTGTTGTTACTTA
AGAATGCCAAAAGAAGATTGCAAATACTGGGATAAGTGCTATCAGCAGAA
TCCCGCACATTTGTCCAAATACAATCATCCGAAAAAGCAACAAGAACACG
AAGTGGACGGCGCAGAAGGCAAAAAAGTGGCGCCAAAAAGAAGTGCATCC
TCGCAGTCTGGTGAACAGAAAAAGGAAGAACAAACGGAGCCGGTGAACAA
GGATAAGTCCAATACGAGTGCTTCAAGTACGGAGATGGTGAACAAGGATA
CAGCCAAGGGCAGTTATGAAGCCGAAACCGAGGAGCTTCACAAAGAGGCC
ATGAGCAACATATCCGGAAAGAACTACATGGAGATCTTGGAGAAGCGCAT
CCGCCTGTCCGTGCAGAAGGAGTACGACAATCTCTGCGAGTCCAACGAGT
TCATTCGACACAAGTTCCTTGTCGAAATGCCGCCGGACTTCTACGAATTT
TGGAAGTTTGTGGGAAGCTTAAAAATTGATCCTGCGAAGCCCAAGGATGC
TGGCTTGGAGCACCTAGACAAAGTATTTCAACTGCAGTTGGTGGGTCCCT
TTGAGTTCCTAGCCGGTAAATTTCACGGCGCCAAACTAGGCGAACCGGGA
GACTACCTGCGCCACTGGCGTTTTTACTACGATCCACCAGAATTTCAGAC
GATCTTCGTGCGCCGAGGCACTGGGATTCACTACGGTTACTGGCGCGATG
TGCCGCAGGACAAGGAAAATCTCTTAATAGCCCGCAACGACTCTGCGAAA
GGCTGCCAGTTCCAATTCGTCGCTGGAAATGCCTTCGATGCTTTCCTCTA
CTACCTGGAGCACGATTTTGCGGCCACTCCGTTCTCATGCGGGCAGTTGG
CGGGGACCAAAAAGGCGGTGGCAAAATACCTGAGTGACAATTCCCTAGAA
CTGGCCCAGCTGGACCGACTGCAGCGGGAGCGCAACAAGCGTGTTGTGGC
CAAGACATTCCACCGAGCCGGCATTGTTGTGCCCTTTGACCAGAAGACAG
AAGTGGGATACCGCCCGCTGGCTGTCAGCGATTCCGAACTCAAGAAGATG
CTGGCAATGCTTGAGCGGAAGGACGTCGATAATGGAGCCGCCAAGCAGGC
GGTTCTGGAGAAGCTGCAGCCGGTGGCCAACGCAGCCAACATAGCAGTTG
ATGAATCGGACTTTGGAAGCGCCCTGGAACTAGGCATCGATATGTTCTGC
AGTGGGCACAAGGAGCTGCACATGCTTGCCTCATCGTTGCTGGTACCCGC
CTATTCAATGCTTTCCCGTCCACAGTTCATAGCCATCGCCAAGGCGCACA
TGGAGCAACGTAGTCGGGAGGACAACCTCAGCATTTTTGATGTACTTAAG
TAGTTCGATTTTTATTCCGCAACCGTATCATTTTTACAAGCATTAAAACT
AGGAAGTTGAGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD28626.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1218-RA 1498 CG1218-RA 35..1498 1..1464 7320 100 Plus
CG2046-RA 999 CG2046-RA 915..999 1465..1381 425 100 Minus
CG2046.a 905 CG2046.a 824..905 1465..1384 410 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1617567..1619030 1..1464 7320 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5791920..5793384 1..1465 7325 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5532751..5534215 1..1465 7325 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:41:31 has no hits.

LD28626.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:42:25 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1617567..1619030 1..1464 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:23 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 1..1350 54..1403 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:02 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 1..1350 54..1403 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:57 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 1..1350 54..1403 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:29 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 1..1350 54..1403 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:30 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 1..1350 54..1403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:43 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 35..1498 1..1464 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:02 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 35..1498 1..1464 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:57 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 42..1505 1..1464 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:29 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 35..1498 1..1464 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:30 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
CG1218-RA 42..1505 1..1464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:25 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5791920..5793383 1..1464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:25 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5791920..5793383 1..1464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:42:25 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5791920..5793383 1..1464 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:57 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1617642..1619105 1..1464 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:35 Download gff for LD28626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5532751..5534214 1..1464 100   Plus

LD28626.pep Sequence

Translation from 53 to 1402

> LD28626.pep
MPKEDCKYWDKCYQQNPAHLSKYNHPKKQQEHEVDGAEGKKVAPKRSASS
QSGEQKKEEQTEPVNKDKSNTSASSTEMVNKDTAKGSYEAETEELHKEAM
SNISGKNYMEILEKRIRLSVQKEYDNLCESNEFIRHKFLVEMPPDFYEFW
KFVGSLKIDPAKPKDAGLEHLDKVFQLQLVGPFEFLAGKFHGAKLGEPGD
YLRHWRFYYDPPEFQTIFVRRGTGIHYGYWRDVPQDKENLLIARNDSAKG
CQFQFVAGNAFDAFLYYLEHDFAATPFSCGQLAGTKKAVAKYLSDNSLEL
AQLDRLQRERNKRVVAKTFHRAGIVVPFDQKTEVGYRPLAVSDSELKKML
AMLERKDVDNGAAKQAVLEKLQPVANAANIAVDESDFGSALELGIDMFCS
GHKELHMLASSLLVPAYSMLSRPQFIAIAKAHMEQRSREDNLSIFDVLK*

LD28626.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16353-PA 373 GF16353-PA 9..373 85..449 1692 83.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13048-PA 446 GG13048-PA 1..446 1..449 2205 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18157-PA 432 GH18157-PA 1..432 1..449 1694 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1218-PA 449 CG1218-PA 1..449 1..449 2356 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10110-PA 426 GI10110-PA 1..426 1..449 1707 70.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24525-PA 442 GL24525-PA 1..442 1..449 1813 74.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11459-PA 442 GA11459-PA 1..442 1..449 1821 75.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10841-PA 449 GM10841-PA 1..449 1..449 2313 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19822-PA 449 GD19822-PA 1..449 1..449 2342 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23331-PA 432 GJ23331-PA 1..432 1..449 1702 70.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13433-PA 452 GK13433-PA 1..451 1..448 1696 68.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10166-PA 447 GE10166-PA 1..447 1..449 2122 88.2 Plus

LD28626.hyp Sequence

Translation from 53 to 1402

> LD28626.hyp
MPKEDCKYWDKCYQQNPAHLSKYNHPKKQQEHEVDGAEGKKVAPKRSASS
QSGEQKKEEQTEPVNKDKSNTSASSTEMVNKDTAKGSYEAETEELHKEAM
SNISGKNYMEILEKRIRLSVQKEYDNLCESNEFIRHKFLVEMPPDFYEFW
KFVGSLKIDPAKPKDAGLEHLDKVFQLQLVGPFEFLAGKFHGAKLGEPGD
YLRHWRFYYDPPEFQTIFVRRGTGIHYGYWRDVPQDKENLLIARNDSAKG
CQFQFVAGNAFDAFLYYLEHDFAATPFSCGQLAGTKKAVAKYLSDNSLEL
AQLDRLQRERNKRVVAKTFHRAGIVVPFDQKTEVGYRPLAVSDSELKKML
AMLERKDVDNGAAKQAVLEKLQPVANAANIAVDESDFGSALELGIDMFCS
GHKELHMLASSLLVPAYSMLSRPQFIAIAKAHMEQRSREDNLSIFDVLK*

LD28626.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1218-PA 449 CG1218-PA 1..449 1..449 2356 100 Plus