BDGP Sequence Production Resources |
Search the DGRC for LD28629
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 286 |
Well: | 29 |
Vector: | pOT2 |
Associated Gene/Transcript | Fit2-RA |
Protein status: | LD28629.pep: gold |
Preliminary Size: | 2945 |
Sequenced Size: | 2772 |
Gene | Date | Evidence |
---|---|---|
CG7729 | 2001-10-10 | Blastp of sequenced clone |
CG7729 | 2003-01-01 | Sim4 clustering to Release 3 |
Fit2 | 2008-04-29 | Release 5.5 accounting |
Fit2 | 2008-08-15 | Release 5.9 accounting |
Fit2 | 2008-12-18 | 5.12 accounting |
2772 bp (2772 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061360
> LD28629.complete TTCGGCGCTTTCTTTTTCAATGGACTGAATTTTCTTTAATTGCTCTATTT ACGCAAGCAAAACGAATCGATGCAATTGTCCGGATCCGGAAATATTGCGG CATAGTCAACGCAATTGCAGTGAATTTTCAACCCGTGGATTGCGTCACAG TGCGGAAAATGCGAATTTGACGACCATCTGTGCGCCGATCGGTGGAAAAC TCTCGACTTTGCTGTGGGCGCCCCACCAAGGACGACCTAGAAACGCCCCA GACGGGCAGCAGAAAGTAGGACAGGTGACATCACAGCAGCACCATGATCC ACGTCGGCGAGAACTCGTGGAATCTGCGGATCTTCATCACGGATCTGGCG CTGGAGAAGACGATGCGCGTGCGCGGTGACCAGCACATTGGGGGCATTAT GCTGCAACTGGTGGATCCGGAGAATCCCAAGGACTGGTCGGATCATGCTC TGTGGTGGCCAGCGCGGAATGTTTGGCTCAGCCGAACCAAACTTACCCTG GATCAGTGCGGTGTCCAGGCGGATAGCCTTCTGCACTTCACGCCCATGCA CAAGATACTGCGGGTGCAGCTGCCGGATTTGAGGTACCTGGACTCCCGGG TGGATTACTCCGTAAAGACGTTCTCGGCGGTGGTTAATCTATGCAAGCAG TTGGATATCCGCTATCCGGAGGAGTTGTCCCTGTGCAAACCACTGGAAGC GGAGCACCTGAAGCGTAACTTCGCCCAGGTGCCGCATCAGAAGCGAGTGC CAATCGCTGAACCAGATGGCACCACTTACCTGCAGCCTGCTGCGGACACC AACTCATTTGTGCCCATCAGCACGTCGTTTCATGGAGAAGGCGGAAGCAC GGGCAGTCTGGACAAGCCCTCTGCACCGGGATCCTTCTTCTGTGCTCCTC TGTCGCCGCACAATCACCGAGCGCGCTCGCCAGTGCGCACCGTATCACCT TTTCCAGGCACCTGGAAACAGAGCCAGCTTGGCTATGCCACGTACGATTC GAGCTCCTCAAGTCTTGGCGATTTCCAGGAGAATTTGGCCAGCTCTCCGC CCACCCCATGCGCGGATGTGCGAGCTCTTCAGCTGCGCCCCAAGTCGCTG GTGGAGAAGGCTCGTCTGAATGTGGGCTGGCTAGATTCCTCGCTGTCCAT CATGGAACAGGGCATACGCGAGTACGACACGCTGTGCCTGCGCTTCAAGT ATTTCACTTTTTTCGATCTAAATCCCAAGTGCGACCAGGTGCGCATCAAT CAGCTGTACGAGCAGGCCAAGTGGAGTGTTCTGAACGAGGAGTTGGATTG CACAGAGGAGGAGAGCCTTATGTTTGCCGCCCTCCAGTTCCAGGTGAACC ATCACGTAGATCATACACCCCAGGGTGCAGCAGTGGACTCGGGCATTGAA ACTTCCAGTCAGGAGAATGACAACGAAGACGAGATTGATTCGGCACTGAA AGAGCTACAGATTACGCTGGAGGGACCGGACTACGGCGGAGACTCGCGGA ATATTACACGCATACCAGAGCTCTCTGACTATTTGCGTTACTTGAAGCCG CAAAGATTCACGCTGCGCGGCTATAAGCGCTACTACTTCACCTATCGGGA TCTGCATTTGCATCTGTTCAAGAACGCCGAAGATTCGCGACGTGTTGCGC CTGCCATAAGCATTAACCTGAAGGGCTGCGAAGTAACTCCGGATGTAAAC CTGTCCCAGGGAAAGTATGCTATCCGGCTGGAGGTCTCTCCTGATGGTGG CCACGGTATCAACAGTGAGGTGTGGGTGCGCTGCGAGAACGAGCAGCAGT ACGCCAAGTGGATGGCTGCTTGTCGTTTGGCGGCCAAGGGAAGATCCCTG GCGGATAGCTCGTACGAGAGTGAAGTGGACAGCATACTCTCGCTACTGCA GATGCAGCGACCCGCACACGGAGTTCATGTAAACATCGATCCTCGCTCTG TGGAAGCAGTTGATTATCTGTCGCCCAAGATCATCCGCAAGTTGTCGAAC AAGGCAGTCCAGCGGATCCTCGAAGCACATGCCAACGTTCGGGAGCTGAA TGCTTTAGATTCAAAACTGAAGTACATCCAGGCATGGCGTTCGTTACCTG ACTTTGGAGTAAGCCTGTTCATCATTAAGTTCGACGGGCATCGGAAGGAG GAGCTGCTCGGCGTGGCCCACAACCGCATTATGCGCATGGATCTGAGTTC GGGAGATCACATCAAGACCTGGCGATATAACACCATGAAGGCGTGGAACG TCAACTGGAACATAAAGTGCATGATGATTCAGTTTGAAGACGAGAATGTG GTCTTCTCCTGCCACTCAGCCGACTGTAAAGTGGTGCACGAGTTCATCGG TGGTTACATTTTCATGTCCATGCGATCCAAGGACACCAACCAGACCCTGA ACGAGGAGCTTTTCCACAAACTTACCGGCGGCTGGTCCTAGTACCATTTA TTGCTCGATTTTAATGGCAGGCAGTTTCAATTGTTCGAATTTTGTTAAGA TAAACCACTGTTTTAACTGATAACCAACTGATAGACTCACAACTTCAATG CAATACATGTATTTAATTTCACTTTATTTACCTTTTAACTCGTTGTTAAC TAATCTTGTTGATGATTTTTCACCACGAAAATCGCTTGCCAATGGCCTTT TTGCCTGCCCAACACCTAATTAGACTTAACCGTGGCCTTAGCAATGTTTT TGTATAACTAACTCTTAAGTGTATATTTAAATAAAAATCCCATATTAAAA TTCAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fit2-RA | 2790 | Fit2-RA | 36..2790 | 1..2755 | 13775 | 100 | Plus |
Fit1-RB | 3471 | Fit1-RB | 2363..2732 | 2068..2437 | 875 | 82.4 | Plus |
Fit1-RA | 3555 | Fit1-RA | 2447..2816 | 2068..2437 | 875 | 82.4 | Plus |
Fit1-RB | 3471 | Fit1-RB | 1390..1655 | 1089..1354 | 640 | 82.7 | Plus |
Fit1-RA | 3555 | Fit1-RA | 1474..1739 | 1089..1354 | 640 | 82.7 | Plus |
Fit1-RB | 3471 | Fit1-RB | 610..776 | 294..460 | 430 | 83.8 | Plus |
Fit1-RA | 3555 | Fit1-RA | 694..860 | 294..460 | 430 | 83.8 | Plus |
Fit1-RB | 3471 | Fit1-RB | 2056..2218 | 1761..1923 | 365 | 81.5 | Plus |
Fit1-RA | 3555 | Fit1-RA | 2140..2302 | 1761..1923 | 365 | 81.5 | Plus |
Fit1-RB | 3471 | Fit1-RB | 845..914 | 529..598 | 200 | 85.7 | Plus |
Fit1-RA | 3555 | Fit1-RA | 929..998 | 529..598 | 200 | 85.7 | Plus |
Fit1-RB | 3471 | Fit1-RB | 1807..1907 | 1512..1612 | 190 | 79.2 | Plus |
Fit1-RA | 3555 | Fit1-RA | 1891..1991 | 1512..1612 | 190 | 79.2 | Plus |
Fit1-RB | 3471 | Fit1-RB | 958..1052 | 642..736 | 175 | 78.9 | Plus |
Fit1-RA | 3555 | Fit1-RA | 1042..1136 | 642..736 | 175 | 78.9 | Plus |
Fit1-RB | 3471 | Fit1-RB | 1949..2027 | 1654..1732 | 170 | 81 | Plus |
Fit1-RB | 3471 | Fit1-RB | 2257..2344 | 1962..2049 | 170 | 79.5 | Plus |
Fit1-RA | 3555 | Fit1-RA | 2033..2111 | 1654..1732 | 170 | 81 | Plus |
Fit1-RA | 3555 | Fit1-RA | 2341..2428 | 1962..2049 | 170 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 17013809..17016561 | 1..2753 | 13540 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 4104426..4105768 | 1089..2437 | 1850 | 76 | Plus |
chr3L | 24539361 | chr3L | 4103646..4104088 | 294..736 | 610 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 17024365..17027119 | 1..2755 | 13775 | 100 | Plus |
3L | 28110227 | 3L | 4105040..4106382 | 1089..2437 | 1850 | 76 | Plus |
3L | 28110227 | 3L | 4104260..4104702 | 294..736 | 610 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 17017465..17020219 | 1..2755 | 13775 | 100 | Plus |
3L | 28103327 | 3L | 4106013..4106382 | 2068..2437 | 875 | 82.4 | Plus |
3L | 28103327 | 3L | 4105040..4105305 | 1089..1354 | 640 | 82.7 | Plus |
3L | 28103327 | 3L | 4104260..4104426 | 294..460 | 430 | 83.8 | Plus |
3L | 28103327 | 3L | 4105706..4105868 | 1761..1923 | 365 | 81.5 | Plus |
3L | 28103327 | 3L | 4104495..4104564 | 529..598 | 200 | 85.7 | Plus |
3L | 28103327 | 3L | 4105457..4105557 | 1512..1612 | 190 | 79.2 | Plus |
3L | 28103327 | 3L | 4104608..4104702 | 642..736 | 175 | 78.9 | Plus |
3L | 28103327 | 3L | 4105599..4105677 | 1654..1732 | 170 | 81 | Plus |
3L | 28103327 | 3L | 4105907..4105994 | 1962..2049 | 170 | 79.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17013809..17016561 | 1..2753 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 1..2148 | 294..2441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 1..2148 | 294..2441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 1..2148 | 294..2441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 1..2148 | 294..2441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 1..2148 | 294..2441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 36..2788 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 36..2788 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 38..2790 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 36..2788 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fit2-RA | 38..2790 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17024365..17027117 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17024365..17027117 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17024365..17027117 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17017465..17020217 | 1..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17017465..17020217 | 1..2753 | 100 | Plus |
Translation from 293 to 2440
> LD28629.pep MIHVGENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDPENPKDWSD HALWWPARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLD SRVDYSVKTFSAVVNLCKQLDIRYPEELSLCKPLEAEHLKRNFAQVPHQK RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAPGSFFC APLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLR FKYFTFFDLNPKCDQVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQ VNHHVDHTPQGAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYGGD SRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRR VAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENE QQYAKWMAACRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDP RSVEAVDYLSPKIIRKLSNKAVQRILEAHANVRELNALDSKLKYIQAWRS LPDFGVSLFIIKFDGHRKEELLGVAHNRIMRMDLSSGDHIKTWRYNTMKA WNVNWNIKCMMIQFEDENVVFSCHSADCKVVHEFIGGYIFMSMRSKDTNQ TLNEELFHKLTGGWS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10099-PA | 710 | GF10099-PA | 1..710 | 1..715 | 3523 | 90.6 | Plus |
Dana\GF10098-PA | 711 | GF10098-PA | 1..711 | 1..715 | 2972 | 76.4 | Plus |
Dana\GF18160-PA | 117 | GF18160-PA | 10..85 | 403..511 | 215 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13599-PA | 715 | GG13599-PA | 1..715 | 1..715 | 3785 | 97.2 | Plus |
Dere\GG15193-PA | 711 | GG15193-PA | 1..711 | 1..715 | 2901 | 75.2 | Plus |
Dere\GG14324-PA | 2836 | GG14324-PA | 272..414 | 557..698 | 156 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14500-PA | 708 | GH14500-PA | 1..708 | 1..715 | 3265 | 84.5 | Plus |
Dgri\GH14564-PA | 718 | GH14564-PA | 1..718 | 1..715 | 2899 | 74.4 | Plus |
Dgri\GH25291-PA | 96 | GH25291-PA | 1..96 | 620..715 | 519 | 93.8 | Plus |
Dgri\GH15312-PA | 2134 | GH15312-PA | 286..414 | 573..698 | 159 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fit2-PA | 715 | CG7729-PA | 1..715 | 1..715 | 3799 | 100 | Plus |
Fit1-PB | 708 | CG14991-PB | 1..708 | 1..715 | 2873 | 75.6 | Plus |
Fit1-PA | 708 | CG14991-PA | 1..708 | 1..715 | 2873 | 75.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13275-PA | 708 | GI13275-PA | 1..708 | 1..715 | 3270 | 85.1 | Plus |
Dmoj\GI13891-PA | 714 | GI13891-PA | 1..714 | 1..715 | 2923 | 74.7 | Plus |
Dmoj\GI12908-PA | 2856 | GI12908-PA | 286..414 | 573..698 | 160 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16192-PA | 711 | GL16192-PA | 1..711 | 1..715 | 3505 | 90.6 | Plus |
Dper\GL17086-PA | 711 | GL17086-PA | 1..711 | 1..715 | 3022 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20549-PA | 711 | GA20549-PA | 1..711 | 1..715 | 3511 | 90.8 | Plus |
Dpse\GA13408-PA | 711 | GA13408-PA | 1..711 | 1..715 | 3022 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25681-PA | 715 | GM25681-PA | 1..715 | 1..715 | 3822 | 98.3 | Plus |
Dsec\GM14624-PA | 711 | GM14624-PA | 1..711 | 1..715 | 2897 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14686-PA | 586 | GD14686-PA | 1..568 | 1..567 | 3011 | 97.9 | Plus |
Dsim\GD13812-PA | 711 | GD13812-PA | 1..711 | 1..715 | 2898 | 75.4 | Plus |
Dsim\GD14103-PA | 660 | GD14103-PA | 272..414 | 557..698 | 154 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12044-PA | 707 | GJ12044-PA | 1..707 | 1..715 | 3289 | 85.9 | Plus |
Dvir\GJ11745-PA | 715 | GJ11745-PA | 1..715 | 1..715 | 2944 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11417-PA | 717 | GK11417-PA | 1..717 | 1..715 | 2967 | 76.3 | Plus |
Dwil\GK17582-PA | 721 | GK17582-PA | 1..721 | 1..715 | 2899 | 75.4 | Plus |
Dwil\GK13336-PA | 2855 | GK13336-PA | 286..414 | 573..698 | 157 | 26.7 | Plus |
Translation from 293 to 2440
> LD28629.hyp MIHVGENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDPENPKDWSD HALWWPARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLD SRVDYSVKTFSAVVNLCKQLDIRYPEELSLCKPLEAEHLKRNFAQVPHQK RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAPGSFFC APLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLR FKYFTFFDLNPKCDQVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQ VNHHVDHTPQGAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYGGD SRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRR VAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENE QQYAKWMAACRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDP RSVEAVDYLSPKIIRKLSNKAVQRILEAHANVRELNALDSKLKYIQAWRS LPDFGVSLFIIKFDGHRKEELLGVAHNRIMRMDLSSGDHIKTWRYNTMKA WNVNWNIKCMMIQFEDENVVFSCHSADCKVVHEFIGGYIFMSMRSKDTNQ TLNEELFHKLTGGWS*