Clone LD28629 Report

Search the DGRC for LD28629

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:286
Well:29
Vector:pOT2
Associated Gene/TranscriptFit2-RA
Protein status:LD28629.pep: gold
Preliminary Size:2945
Sequenced Size:2772

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7729 2001-10-10 Blastp of sequenced clone
CG7729 2003-01-01 Sim4 clustering to Release 3
Fit2 2008-04-29 Release 5.5 accounting
Fit2 2008-08-15 Release 5.9 accounting
Fit2 2008-12-18 5.12 accounting

Clone Sequence Records

LD28629.complete Sequence

2772 bp (2772 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061360

> LD28629.complete
TTCGGCGCTTTCTTTTTCAATGGACTGAATTTTCTTTAATTGCTCTATTT
ACGCAAGCAAAACGAATCGATGCAATTGTCCGGATCCGGAAATATTGCGG
CATAGTCAACGCAATTGCAGTGAATTTTCAACCCGTGGATTGCGTCACAG
TGCGGAAAATGCGAATTTGACGACCATCTGTGCGCCGATCGGTGGAAAAC
TCTCGACTTTGCTGTGGGCGCCCCACCAAGGACGACCTAGAAACGCCCCA
GACGGGCAGCAGAAAGTAGGACAGGTGACATCACAGCAGCACCATGATCC
ACGTCGGCGAGAACTCGTGGAATCTGCGGATCTTCATCACGGATCTGGCG
CTGGAGAAGACGATGCGCGTGCGCGGTGACCAGCACATTGGGGGCATTAT
GCTGCAACTGGTGGATCCGGAGAATCCCAAGGACTGGTCGGATCATGCTC
TGTGGTGGCCAGCGCGGAATGTTTGGCTCAGCCGAACCAAACTTACCCTG
GATCAGTGCGGTGTCCAGGCGGATAGCCTTCTGCACTTCACGCCCATGCA
CAAGATACTGCGGGTGCAGCTGCCGGATTTGAGGTACCTGGACTCCCGGG
TGGATTACTCCGTAAAGACGTTCTCGGCGGTGGTTAATCTATGCAAGCAG
TTGGATATCCGCTATCCGGAGGAGTTGTCCCTGTGCAAACCACTGGAAGC
GGAGCACCTGAAGCGTAACTTCGCCCAGGTGCCGCATCAGAAGCGAGTGC
CAATCGCTGAACCAGATGGCACCACTTACCTGCAGCCTGCTGCGGACACC
AACTCATTTGTGCCCATCAGCACGTCGTTTCATGGAGAAGGCGGAAGCAC
GGGCAGTCTGGACAAGCCCTCTGCACCGGGATCCTTCTTCTGTGCTCCTC
TGTCGCCGCACAATCACCGAGCGCGCTCGCCAGTGCGCACCGTATCACCT
TTTCCAGGCACCTGGAAACAGAGCCAGCTTGGCTATGCCACGTACGATTC
GAGCTCCTCAAGTCTTGGCGATTTCCAGGAGAATTTGGCCAGCTCTCCGC
CCACCCCATGCGCGGATGTGCGAGCTCTTCAGCTGCGCCCCAAGTCGCTG
GTGGAGAAGGCTCGTCTGAATGTGGGCTGGCTAGATTCCTCGCTGTCCAT
CATGGAACAGGGCATACGCGAGTACGACACGCTGTGCCTGCGCTTCAAGT
ATTTCACTTTTTTCGATCTAAATCCCAAGTGCGACCAGGTGCGCATCAAT
CAGCTGTACGAGCAGGCCAAGTGGAGTGTTCTGAACGAGGAGTTGGATTG
CACAGAGGAGGAGAGCCTTATGTTTGCCGCCCTCCAGTTCCAGGTGAACC
ATCACGTAGATCATACACCCCAGGGTGCAGCAGTGGACTCGGGCATTGAA
ACTTCCAGTCAGGAGAATGACAACGAAGACGAGATTGATTCGGCACTGAA
AGAGCTACAGATTACGCTGGAGGGACCGGACTACGGCGGAGACTCGCGGA
ATATTACACGCATACCAGAGCTCTCTGACTATTTGCGTTACTTGAAGCCG
CAAAGATTCACGCTGCGCGGCTATAAGCGCTACTACTTCACCTATCGGGA
TCTGCATTTGCATCTGTTCAAGAACGCCGAAGATTCGCGACGTGTTGCGC
CTGCCATAAGCATTAACCTGAAGGGCTGCGAAGTAACTCCGGATGTAAAC
CTGTCCCAGGGAAAGTATGCTATCCGGCTGGAGGTCTCTCCTGATGGTGG
CCACGGTATCAACAGTGAGGTGTGGGTGCGCTGCGAGAACGAGCAGCAGT
ACGCCAAGTGGATGGCTGCTTGTCGTTTGGCGGCCAAGGGAAGATCCCTG
GCGGATAGCTCGTACGAGAGTGAAGTGGACAGCATACTCTCGCTACTGCA
GATGCAGCGACCCGCACACGGAGTTCATGTAAACATCGATCCTCGCTCTG
TGGAAGCAGTTGATTATCTGTCGCCCAAGATCATCCGCAAGTTGTCGAAC
AAGGCAGTCCAGCGGATCCTCGAAGCACATGCCAACGTTCGGGAGCTGAA
TGCTTTAGATTCAAAACTGAAGTACATCCAGGCATGGCGTTCGTTACCTG
ACTTTGGAGTAAGCCTGTTCATCATTAAGTTCGACGGGCATCGGAAGGAG
GAGCTGCTCGGCGTGGCCCACAACCGCATTATGCGCATGGATCTGAGTTC
GGGAGATCACATCAAGACCTGGCGATATAACACCATGAAGGCGTGGAACG
TCAACTGGAACATAAAGTGCATGATGATTCAGTTTGAAGACGAGAATGTG
GTCTTCTCCTGCCACTCAGCCGACTGTAAAGTGGTGCACGAGTTCATCGG
TGGTTACATTTTCATGTCCATGCGATCCAAGGACACCAACCAGACCCTGA
ACGAGGAGCTTTTCCACAAACTTACCGGCGGCTGGTCCTAGTACCATTTA
TTGCTCGATTTTAATGGCAGGCAGTTTCAATTGTTCGAATTTTGTTAAGA
TAAACCACTGTTTTAACTGATAACCAACTGATAGACTCACAACTTCAATG
CAATACATGTATTTAATTTCACTTTATTTACCTTTTAACTCGTTGTTAAC
TAATCTTGTTGATGATTTTTCACCACGAAAATCGCTTGCCAATGGCCTTT
TTGCCTGCCCAACACCTAATTAGACTTAACCGTGGCCTTAGCAATGTTTT
TGTATAACTAACTCTTAAGTGTATATTTAAATAAAAATCCCATATTAAAA
TTCAAAAAAAAAAAAAAAAAAA

LD28629.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Fit2-RA 2790 Fit2-RA 36..2790 1..2755 13775 100 Plus
Fit1-RB 3471 Fit1-RB 2363..2732 2068..2437 875 82.4 Plus
Fit1-RA 3555 Fit1-RA 2447..2816 2068..2437 875 82.4 Plus
Fit1-RB 3471 Fit1-RB 1390..1655 1089..1354 640 82.7 Plus
Fit1-RA 3555 Fit1-RA 1474..1739 1089..1354 640 82.7 Plus
Fit1-RB 3471 Fit1-RB 610..776 294..460 430 83.8 Plus
Fit1-RA 3555 Fit1-RA 694..860 294..460 430 83.8 Plus
Fit1-RB 3471 Fit1-RB 2056..2218 1761..1923 365 81.5 Plus
Fit1-RA 3555 Fit1-RA 2140..2302 1761..1923 365 81.5 Plus
Fit1-RB 3471 Fit1-RB 845..914 529..598 200 85.7 Plus
Fit1-RA 3555 Fit1-RA 929..998 529..598 200 85.7 Plus
Fit1-RB 3471 Fit1-RB 1807..1907 1512..1612 190 79.2 Plus
Fit1-RA 3555 Fit1-RA 1891..1991 1512..1612 190 79.2 Plus
Fit1-RB 3471 Fit1-RB 958..1052 642..736 175 78.9 Plus
Fit1-RA 3555 Fit1-RA 1042..1136 642..736 175 78.9 Plus
Fit1-RB 3471 Fit1-RB 1949..2027 1654..1732 170 81 Plus
Fit1-RB 3471 Fit1-RB 2257..2344 1962..2049 170 79.5 Plus
Fit1-RA 3555 Fit1-RA 2033..2111 1654..1732 170 81 Plus
Fit1-RA 3555 Fit1-RA 2341..2428 1962..2049 170 79.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17013809..17016561 1..2753 13540 99.5 Plus
chr3L 24539361 chr3L 4104426..4105768 1089..2437 1850 76 Plus
chr3L 24539361 chr3L 4103646..4104088 294..736 610 75.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17024365..17027119 1..2755 13775 100 Plus
3L 28110227 3L 4105040..4106382 1089..2437 1850 76 Plus
3L 28110227 3L 4104260..4104702 294..736 610 75.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17017465..17020219 1..2755 13775 100 Plus
3L 28103327 3L 4106013..4106382 2068..2437 875 82.4 Plus
3L 28103327 3L 4105040..4105305 1089..1354 640 82.7 Plus
3L 28103327 3L 4104260..4104426 294..460 430 83.8 Plus
3L 28103327 3L 4105706..4105868 1761..1923 365 81.5 Plus
3L 28103327 3L 4104495..4104564 529..598 200 85.7 Plus
3L 28103327 3L 4105457..4105557 1512..1612 190 79.2 Plus
3L 28103327 3L 4104608..4104702 642..736 175 78.9 Plus
3L 28103327 3L 4105599..4105677 1654..1732 170 81 Plus
3L 28103327 3L 4105907..4105994 1962..2049 170 79.5 Plus
Blast to na_te.dros performed on 2019-03-16 21:52:03 has no hits.

LD28629.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:42 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17013809..17016561 1..2753 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:08:25 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 1..2148 294..2441 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:30 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 1..2148 294..2441 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:16 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 1..2148 294..2441 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:31 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 1..2148 294..2441 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:59 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 1..2148 294..2441 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:57 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 36..2788 1..2753 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:30 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 36..2788 1..2753 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:16 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 38..2790 1..2753 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:31 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 36..2788 1..2753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:59 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
Fit2-RA 38..2790 1..2753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:42 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17024365..17027117 1..2753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:42 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17024365..17027117 1..2753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:42 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17024365..17027117 1..2753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:16 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17017465..17020217 1..2753 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:40 Download gff for LD28629.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17017465..17020217 1..2753 100   Plus

LD28629.pep Sequence

Translation from 293 to 2440

> LD28629.pep
MIHVGENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDPENPKDWSD
HALWWPARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLD
SRVDYSVKTFSAVVNLCKQLDIRYPEELSLCKPLEAEHLKRNFAQVPHQK
RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAPGSFFC
APLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS
SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLR
FKYFTFFDLNPKCDQVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQ
VNHHVDHTPQGAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYGGD
SRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRR
VAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENE
QQYAKWMAACRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDP
RSVEAVDYLSPKIIRKLSNKAVQRILEAHANVRELNALDSKLKYIQAWRS
LPDFGVSLFIIKFDGHRKEELLGVAHNRIMRMDLSSGDHIKTWRYNTMKA
WNVNWNIKCMMIQFEDENVVFSCHSADCKVVHEFIGGYIFMSMRSKDTNQ
TLNEELFHKLTGGWS*

LD28629.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10099-PA 710 GF10099-PA 1..710 1..715 3523 90.6 Plus
Dana\GF10098-PA 711 GF10098-PA 1..711 1..715 2972 76.4 Plus
Dana\GF18160-PA 117 GF18160-PA 10..85 403..511 215 45.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13599-PA 715 GG13599-PA 1..715 1..715 3785 97.2 Plus
Dere\GG15193-PA 711 GG15193-PA 1..711 1..715 2901 75.2 Plus
Dere\GG14324-PA 2836 GG14324-PA 272..414 557..698 156 26.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14500-PA 708 GH14500-PA 1..708 1..715 3265 84.5 Plus
Dgri\GH14564-PA 718 GH14564-PA 1..718 1..715 2899 74.4 Plus
Dgri\GH25291-PA 96 GH25291-PA 1..96 620..715 519 93.8 Plus
Dgri\GH15312-PA 2134 GH15312-PA 286..414 573..698 159 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Fit2-PA 715 CG7729-PA 1..715 1..715 3799 100 Plus
Fit1-PB 708 CG14991-PB 1..708 1..715 2873 75.6 Plus
Fit1-PA 708 CG14991-PA 1..708 1..715 2873 75.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13275-PA 708 GI13275-PA 1..708 1..715 3270 85.1 Plus
Dmoj\GI13891-PA 714 GI13891-PA 1..714 1..715 2923 74.7 Plus
Dmoj\GI12908-PA 2856 GI12908-PA 286..414 573..698 160 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16192-PA 711 GL16192-PA 1..711 1..715 3505 90.6 Plus
Dper\GL17086-PA 711 GL17086-PA 1..711 1..715 3022 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20549-PA 711 GA20549-PA 1..711 1..715 3511 90.8 Plus
Dpse\GA13408-PA 711 GA13408-PA 1..711 1..715 3022 77.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25681-PA 715 GM25681-PA 1..715 1..715 3822 98.3 Plus
Dsec\GM14624-PA 711 GM14624-PA 1..711 1..715 2897 75.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14686-PA 586 GD14686-PA 1..568 1..567 3011 97.9 Plus
Dsim\GD13812-PA 711 GD13812-PA 1..711 1..715 2898 75.4 Plus
Dsim\GD14103-PA 660 GD14103-PA 272..414 557..698 154 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12044-PA 707 GJ12044-PA 1..707 1..715 3289 85.9 Plus
Dvir\GJ11745-PA 715 GJ11745-PA 1..715 1..715 2944 74.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11417-PA 717 GK11417-PA 1..717 1..715 2967 76.3 Plus
Dwil\GK17582-PA 721 GK17582-PA 1..721 1..715 2899 75.4 Plus
Dwil\GK13336-PA 2855 GK13336-PA 286..414 573..698 157 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19895-PA 715 GE19895-PA 1..715 1..715 3794 97.6 Plus
Dyak\GE21412-PA 711 GE21412-PA 1..711 1..715 2921 75.9 Plus

LD28629.hyp Sequence

Translation from 293 to 2440

> LD28629.hyp
MIHVGENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDPENPKDWSD
HALWWPARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLD
SRVDYSVKTFSAVVNLCKQLDIRYPEELSLCKPLEAEHLKRNFAQVPHQK
RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAPGSFFC
APLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS
SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLR
FKYFTFFDLNPKCDQVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQ
VNHHVDHTPQGAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYGGD
SRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRR
VAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENE
QQYAKWMAACRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDP
RSVEAVDYLSPKIIRKLSNKAVQRILEAHANVRELNALDSKLKYIQAWRS
LPDFGVSLFIIKFDGHRKEELLGVAHNRIMRMDLSSGDHIKTWRYNTMKA
WNVNWNIKCMMIQFEDENVVFSCHSADCKVVHEFIGGYIFMSMRSKDTNQ
TLNEELFHKLTGGWS*

LD28629.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Fit2-PA 715 CG7729-PA 1..715 1..715 3799 100 Plus
Fit1-PB 708 CG14991-PB 1..708 1..715 2873 75.6 Plus
Fit1-PA 708 CG14991-PA 1..708 1..715 2873 75.6 Plus