BDGP Sequence Production Resources |
Search the DGRC for LD28763
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 287 |
Well: | 63 |
Vector: | pOT2 |
Associated Gene/Transcript | Pvf1-RA |
Protein status: | LD28763.pep: gold |
Preliminary Size: | 2110 |
Sequenced Size: | 1893 |
Gene | Date | Evidence |
---|---|---|
CG7103 | 2001-01-01 | Release 2 assignment |
CG7103 | 2001-07-04 | Blastp of sequenced clone |
CG7103 | 2003-01-01 | Sim4 clustering to Release 3 |
Pvf1 | 2008-04-29 | Release 5.5 accounting |
Pvf1 | 2008-08-15 | Release 5.9 accounting |
Pvf1 | 2008-12-18 | 5.12 accounting |
1893 bp (1893 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051751
> LD28763.complete ACGAGTCGACAGTTTTGAACGGAACTTGCTGGTGCTTGGATCGCAGCTCC GCCGATCTCCGCGAGGCTAACACCACAAACTTAAACGCGCTCAAATATAT ATCACAAATTATTAAATACAAAACCCCCCATTTGTGCACACATATTTTTT GTTGTTTGTTTTTCGTTTCGTGCTAACCGATTTGTGCCATTGAACTTCGT GTAAAACATAATATTTAGAATTTTCAAGCCGTGTTTCCATAAAATAATTG TAACGGATTCTGTGTCCTCTAACGCCATTGAAAACTGTTCTTCCATCGCA TCCGCATGGCCATGTCCCGAATCCGAATTCTGAAGCCCATGCAGCATCCA TTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTCAGCGAGGCAGC GGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATCGCAGAGGTTCT TCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCAAGGTGCGCCTG CTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCACTGGAGGGCAG CTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATTGACGCTCCCAC TGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACTACGATGTGTCC GGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGCATCATGAAATC AACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCAACCGACGATCG TGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACTACTATATGCCC GCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGATCCACGCTGAT CTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCGGGTGCGCAAGG TGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCATCATCACCGTG GAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAGGCGGAGGACTG CAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTGCGAGTGCCACA ACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGAACAAGTATTGG GTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAGAGCTGCACCAC CGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGACCCGGCTGCAC CCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGGCGGTACAGGTG GATCCCGATAACACCACCCTGTACAGTGTTTGAGGACAGTTGGTTCGCCA CGGAGTACGAAGTAGAAACGCCAGCCTCCTAGCGGGGAATCCCCGAGTAC TGAGAAGGCAATTGCCGGGGAATTGCACCGTGTACTTTATAATATTTATA GTTATCGATTAAATGTAGGCTAAAACTTCAATATCCCTAAACTTAACACA CAGTATTTACCCCACTCTGCATCTGCGGCACAAGAAAAACTTTAAGTGGT TGCGCAGAAATCTCTGACGATTCGATATTTGCCTAAAAGTTTATGGTTGG CCAGTAAAAATCCACAGAGAAGTGTACTTTCAGATACATTTTCGAAGTAT TTTAGACCTTTGGAGATTTCTGCACAAATCCTGTACATTACTTTTTATGA ATTTGTTTATATAACTTTTTAAGCGCCTTTCACTTTGTAGCGGCTTTGTA CACATTTGTTGATTTCCGTTTGTTTAAGTTTTAAGTCATCCAAAAATAGT TGTCCACAATTTAAAGACTTTCAATTATCCGCCGTACTTCATTTGTATGT AACTTTTTTTTTTTTTGTAAAAAAAATGTTAGATTTAAGTTTGCGTAAAG AAAATACAGACAATGTATTGAATTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18731368..18732049 | 1191..1874 | 3340 | 99.6 | Plus |
chrX | 22417052 | chrX | 18729792..18730282 | 700..1190 | 2335 | 98.4 | Plus |
chrX | 22417052 | chrX | 18727157..18727506 | 244..593 | 1750 | 100 | Plus |
chrX | 22417052 | chrX | 18721854..18722100 | 1..247 | 1220 | 99.6 | Plus |
chrX | 22417052 | chrX | 18729544..18729623 | 593..672 | 400 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18842218..18842902 | 1191..1875 | 3425 | 100 | Plus |
X | 23542271 | X | 18840630..18841120 | 700..1190 | 2455 | 100 | Plus |
X | 23542271 | X | 18837993..18838342 | 244..593 | 1750 | 100 | Plus |
X | 23542271 | X | 18832704..18832950 | 1..247 | 1220 | 99.6 | Plus |
X | 23542271 | X | 18840381..18840460 | 593..672 | 400 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18850316..18851000 | 1191..1875 | 3425 | 100 | Plus |
X | 23527363 | X | 18848728..18849218 | 700..1190 | 2455 | 100 | Plus |
X | 23527363 | X | 18846091..18846440 | 244..593 | 1750 | 100 | Plus |
X | 23527363 | X | 18840802..18841048 | 1..247 | 1220 | 99.5 | Plus |
X | 23527363 | X | 18848479..18848558 | 593..672 | 400 | 100 | Plus |
X | 23527363 | X | 18848629..18848656 | 672..699 | 140 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 1791..1847 | 1842..1788 | 117 | 71.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18721854..18722096 | 1..243 | 100 | -> | Plus |
chrX | 18727157..18727506 | 244..593 | 100 | -> | Plus |
chrX | 18729545..18729623 | 594..672 | 100 | -> | Plus |
chrX | 18729695..18729721 | 673..699 | 100 | -> | Plus |
chrX | 18729792..18730282 | 700..1190 | 98 | -> | Plus |
chrX | 18731368..18732049 | 1191..1874 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..978 | 306..1283 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..978 | 306..1283 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..978 | 306..1283 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..978 | 306..1283 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..978 | 306..1283 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..1874 | 1..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..1874 | 1..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 23..1896 | 1..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 1..1874 | 1..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pvf1-RA | 23..1896 | 1..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18832704..18832946 | 1..243 | 100 | -> | Plus |
X | 18837993..18838342 | 244..593 | 100 | -> | Plus |
X | 18840382..18840460 | 594..672 | 100 | -> | Plus |
X | 18840532..18840558 | 673..699 | 100 | -> | Plus |
X | 18840630..18841120 | 700..1190 | 100 | -> | Plus |
X | 18842218..18842901 | 1191..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18832704..18832946 | 1..243 | 100 | -> | Plus |
X | 18837993..18838342 | 244..593 | 100 | -> | Plus |
X | 18840382..18840460 | 594..672 | 100 | -> | Plus |
X | 18840532..18840558 | 673..699 | 100 | -> | Plus |
X | 18840630..18841120 | 700..1190 | 100 | -> | Plus |
X | 18842218..18842901 | 1191..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18832704..18832946 | 1..243 | 100 | -> | Plus |
X | 18837993..18838342 | 244..593 | 100 | -> | Plus |
X | 18840382..18840460 | 594..672 | 100 | -> | Plus |
X | 18840532..18840558 | 673..699 | 100 | -> | Plus |
X | 18840630..18841120 | 700..1190 | 100 | -> | Plus |
X | 18842218..18842901 | 1191..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18726737..18726979 | 1..243 | 100 | -> | Plus |
arm_X | 18732026..18732375 | 244..593 | 100 | -> | Plus |
arm_X | 18734415..18734493 | 594..672 | 100 | -> | Plus |
arm_X | 18734565..18734591 | 673..699 | 100 | -> | Plus |
arm_X | 18734663..18735153 | 700..1190 | 100 | -> | Plus |
arm_X | 18736251..18736934 | 1191..1874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18848728..18849218 | 700..1190 | 100 | -> | Plus |
X | 18840802..18841044 | 1..243 | 100 | -> | Plus |
X | 18846091..18846440 | 244..593 | 100 | -> | Plus |
X | 18848480..18848558 | 594..672 | 100 | -> | Plus |
X | 18848630..18848656 | 673..699 | 100 | -> | Plus |
X | 18850316..18850999 | 1191..1874 | 100 | Plus |
Translation from 305 to 1282
> LD28763.pep MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI DVLDRKRFIVQAVQVDPDNTTLYSV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19053-PA | 328 | GF19053-PA | 31..328 | 35..325 | 992 | 65.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19190-PA | 337 | GG19190-PA | 15..337 | 9..325 | 1530 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24520-PA | 330 | GH24520-PA | 61..330 | 47..325 | 684 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pvf1-PA | 325 | CG7103-PA | 1..325 | 1..325 | 1722 | 100 | Plus |
Pvf1-PB | 314 | CG7103-PB | 1..314 | 12..325 | 1670 | 100 | Plus |
Pvf1-PC | 300 | CG7103-PC | 1..295 | 1..295 | 1571 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15086-PA | 335 | GI15086-PA | 91..335 | 82..325 | 938 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21336-PA | 308 | GL21336-PA | 22..103 | 27..105 | 191 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20104-PA | 323 | GA20104-PA | 22..323 | 27..325 | 1116 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22921-PA | 241 | GM22921-PA | 13..241 | 97..325 | 1213 | 98.7 | Plus |
Dsec\GM18722-PA | 229 | GM18722-PA | 1..229 | 97..325 | 1207 | 98.7 | Plus |
Dsec\GM22922-PA | 84 | GM22922-PA | 1..84 | 242..325 | 432 | 95.2 | Plus |
Dsec\GM22920-PA | 95 | GM22920-PA | 1..81 | 1..81 | 309 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17412-PA | 241 | GD17412-PA | 13..241 | 97..325 | 1225 | 99.6 | Plus |
Dsim\GD24860-PA | 151 | GD24860-PA | 46..95 | 49..97 | 230 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18893-PA | 327 | GJ18893-PA | 82..327 | 82..325 | 911 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16524-PA | 324 | GK16524-PA | 26..324 | 34..325 | 750 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17753-PA | 326 | GE17753-PA | 1..326 | 1..325 | 1532 | 92.6 | Plus |
Translation from 305 to 1282
> LD28763.hyp MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI DVLDRKRFIVQAVQVDPDNTTLYSV*