Clone LD28763 Report

Search the DGRC for LD28763

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:287
Well:63
Vector:pOT2
Associated Gene/TranscriptPvf1-RA
Protein status:LD28763.pep: gold
Preliminary Size:2110
Sequenced Size:1893

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7103 2001-01-01 Release 2 assignment
CG7103 2001-07-04 Blastp of sequenced clone
CG7103 2003-01-01 Sim4 clustering to Release 3
Pvf1 2008-04-29 Release 5.5 accounting
Pvf1 2008-08-15 Release 5.9 accounting
Pvf1 2008-12-18 5.12 accounting

Clone Sequence Records

LD28763.complete Sequence

1893 bp (1893 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051751

> LD28763.complete
ACGAGTCGACAGTTTTGAACGGAACTTGCTGGTGCTTGGATCGCAGCTCC
GCCGATCTCCGCGAGGCTAACACCACAAACTTAAACGCGCTCAAATATAT
ATCACAAATTATTAAATACAAAACCCCCCATTTGTGCACACATATTTTTT
GTTGTTTGTTTTTCGTTTCGTGCTAACCGATTTGTGCCATTGAACTTCGT
GTAAAACATAATATTTAGAATTTTCAAGCCGTGTTTCCATAAAATAATTG
TAACGGATTCTGTGTCCTCTAACGCCATTGAAAACTGTTCTTCCATCGCA
TCCGCATGGCCATGTCCCGAATCCGAATTCTGAAGCCCATGCAGCATCCA
TTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTCAGCGAGGCAGC
GGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATCGCAGAGGTTCT
TCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCAAGGTGCGCCTG
CTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCACTGGAGGGCAG
CTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATTGACGCTCCCAC
TGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACTACGATGTGTCC
GGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGCATCATGAAATC
AACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCAACCGACGATCG
TGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACTACTATATGCCC
GCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGATCCACGCTGAT
CTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCGGGTGCGCAAGG
TGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCATCATCACCGTG
GAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAGGCGGAGGACTG
CAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTGCGAGTGCCACA
ACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGAACAAGTATTGG
GTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAGAGCTGCACCAC
CGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGACCCGGCTGCAC
CCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGGCGGTACAGGTG
GATCCCGATAACACCACCCTGTACAGTGTTTGAGGACAGTTGGTTCGCCA
CGGAGTACGAAGTAGAAACGCCAGCCTCCTAGCGGGGAATCCCCGAGTAC
TGAGAAGGCAATTGCCGGGGAATTGCACCGTGTACTTTATAATATTTATA
GTTATCGATTAAATGTAGGCTAAAACTTCAATATCCCTAAACTTAACACA
CAGTATTTACCCCACTCTGCATCTGCGGCACAAGAAAAACTTTAAGTGGT
TGCGCAGAAATCTCTGACGATTCGATATTTGCCTAAAAGTTTATGGTTGG
CCAGTAAAAATCCACAGAGAAGTGTACTTTCAGATACATTTTCGAAGTAT
TTTAGACCTTTGGAGATTTCTGCACAAATCCTGTACATTACTTTTTATGA
ATTTGTTTATATAACTTTTTAAGCGCCTTTCACTTTGTAGCGGCTTTGTA
CACATTTGTTGATTTCCGTTTGTTTAAGTTTTAAGTCATCCAAAAATAGT
TGTCCACAATTTAAAGACTTTCAATTATCCGCCGTACTTCATTTGTATGT
AACTTTTTTTTTTTTTGTAAAAAAAATGTTAGATTTAAGTTTGCGTAAAG
AAAATACAGACAATGTATTGAATTAAAAAAAAAAAAAAAAAAA

LD28763.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RA 2047 Pvf1-RA 126..2000 1..1875 9375 100 Plus
Pvf1-RB 1783 Pvf1-RB 245..1783 336..1874 7695 100 Plus
Pvf1-RB 1783 Pvf1-RB 2..244 1..243 1215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18731368..18732049 1191..1874 3340 99.6 Plus
chrX 22417052 chrX 18729792..18730282 700..1190 2335 98.4 Plus
chrX 22417052 chrX 18727157..18727506 244..593 1750 100 Plus
chrX 22417052 chrX 18721854..18722100 1..247 1220 99.6 Plus
chrX 22417052 chrX 18729544..18729623 593..672 400 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:21:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18842218..18842902 1191..1875 3425 100 Plus
X 23542271 X 18840630..18841120 700..1190 2455 100 Plus
X 23542271 X 18837993..18838342 244..593 1750 100 Plus
X 23542271 X 18832704..18832950 1..247 1220 99.6 Plus
X 23542271 X 18840381..18840460 593..672 400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18850316..18851000 1191..1875 3425 100 Plus
X 23527363 X 18848728..18849218 700..1190 2455 100 Plus
X 23527363 X 18846091..18846440 244..593 1750 100 Plus
X 23527363 X 18840802..18841048 1..247 1220 99.5 Plus
X 23527363 X 18848479..18848558 593..672 400 100 Plus
X 23527363 X 18848629..18848656 672..699 140 100 Plus
Blast to na_te.dros performed 2019-03-16 21:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1791..1847 1842..1788 117 71.9 Minus

LD28763.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:45 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18721854..18722096 1..243 100 -> Plus
chrX 18727157..18727506 244..593 100 -> Plus
chrX 18729545..18729623 594..672 100 -> Plus
chrX 18729695..18729721 673..699 100 -> Plus
chrX 18729792..18730282 700..1190 98 -> Plus
chrX 18731368..18732049 1191..1874 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:32 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 306..1283 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:45 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 306..1283 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:07:19 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 306..1283 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:22 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 306..1283 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:05 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 306..1283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:31 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..1874 1..1874 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:45 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..1874 1..1874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:19 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 23..1896 1..1874 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:22 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..1874 1..1874 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:05 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 23..1896 1..1874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:45 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
X 18832704..18832946 1..243 100 -> Plus
X 18837993..18838342 244..593 100 -> Plus
X 18840382..18840460 594..672 100 -> Plus
X 18840532..18840558 673..699 100 -> Plus
X 18840630..18841120 700..1190 100 -> Plus
X 18842218..18842901 1191..1874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:45 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
X 18832704..18832946 1..243 100 -> Plus
X 18837993..18838342 244..593 100 -> Plus
X 18840382..18840460 594..672 100 -> Plus
X 18840532..18840558 673..699 100 -> Plus
X 18840630..18841120 700..1190 100 -> Plus
X 18842218..18842901 1191..1874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:45 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
X 18832704..18832946 1..243 100 -> Plus
X 18837993..18838342 244..593 100 -> Plus
X 18840382..18840460 594..672 100 -> Plus
X 18840532..18840558 673..699 100 -> Plus
X 18840630..18841120 700..1190 100 -> Plus
X 18842218..18842901 1191..1874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:19 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18726737..18726979 1..243 100 -> Plus
arm_X 18732026..18732375 244..593 100 -> Plus
arm_X 18734415..18734493 594..672 100 -> Plus
arm_X 18734565..18734591 673..699 100 -> Plus
arm_X 18734663..18735153 700..1190 100 -> Plus
arm_X 18736251..18736934 1191..1874 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:30:54 Download gff for LD28763.complete
Subject Subject Range Query Range Percent Splice Strand
X 18848728..18849218 700..1190 100 -> Plus
X 18840802..18841044 1..243 100 -> Plus
X 18846091..18846440 244..593 100 -> Plus
X 18848480..18848558 594..672 100 -> Plus
X 18848630..18848656 673..699 100 -> Plus
X 18850316..18850999 1191..1874 100   Plus

LD28763.pep Sequence

Translation from 305 to 1282

> LD28763.pep
MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY
AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS
VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE
LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD
RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT
DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI
DVLDRKRFIVQAVQVDPDNTTLYSV*

LD28763.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19053-PA 328 GF19053-PA 31..328 35..325 992 65.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19190-PA 337 GG19190-PA 15..337 9..325 1530 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24520-PA 330 GH24520-PA 61..330 47..325 684 52.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-PA 325 CG7103-PA 1..325 1..325 1722 100 Plus
Pvf1-PB 314 CG7103-PB 1..314 12..325 1670 100 Plus
Pvf1-PC 300 CG7103-PC 1..295 1..295 1571 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15086-PA 335 GI15086-PA 91..335 82..325 938 71.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21336-PA 308 GL21336-PA 22..103 27..105 191 57.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20104-PA 323 GA20104-PA 22..323 27..325 1116 71.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22921-PA 241 GM22921-PA 13..241 97..325 1213 98.7 Plus
Dsec\GM18722-PA 229 GM18722-PA 1..229 97..325 1207 98.7 Plus
Dsec\GM22922-PA 84 GM22922-PA 1..84 242..325 432 95.2 Plus
Dsec\GM22920-PA 95 GM22920-PA 1..81 1..81 309 88.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17412-PA 241 GD17412-PA 13..241 97..325 1225 99.6 Plus
Dsim\GD24860-PA 151 GD24860-PA 46..95 49..97 230 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18893-PA 327 GJ18893-PA 82..327 82..325 911 69.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16524-PA 324 GK16524-PA 26..324 34..325 750 52.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17753-PA 326 GE17753-PA 1..326 1..325 1532 92.6 Plus

LD28763.hyp Sequence

Translation from 305 to 1282

> LD28763.hyp
MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY
AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS
VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE
LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD
RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT
DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI
DVLDRKRFIVQAVQVDPDNTTLYSV*

LD28763.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-PA 325 CG7103-PA 1..325 1..325 1722 100 Plus
Pvf1-PB 314 CG7103-PB 1..314 12..325 1670 100 Plus
Pvf1-PC 300 CG7103-PC 1..295 1..295 1571 100 Plus