BDGP Sequence Production Resources |
Search the DGRC for LD28808
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 288 |
Well: | 8 |
Vector: | pOT2 |
Associated Gene/Transcript | Art1-RA |
Protein status: | LD28808.pep: gold |
Preliminary Size: | 1668 |
Sequenced Size: | 1511 |
Gene | Date | Evidence |
---|---|---|
CG6554 | 2001-01-01 | Release 2 assignment |
CG6554 | 2002-04-04 | Blastp of sequenced clone |
CG6554 | 2003-01-01 | Sim4 clustering to Release 3 |
Art1 | 2008-04-29 | Release 5.5 accounting |
Art1 | 2008-08-15 | Release 5.9 accounting |
Art1 | 2008-12-18 | 5.12 accounting |
1511 bp (1511 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095041
> LD28808.complete TAGAAACAGTCCCATCATTTAGTCGCCAATTTTTCGACGTGAAAAACCAA AGAGACGCCGAAGAAATTAGAAAATGGCCAGCACAGACATTCCCATGGAG GCAGCTGTGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTC AAACAATGTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATC CCAATGCCAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCC TATGCCCATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCAC CGTCACATACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCA AGACCGTACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCT GCCAAAGCCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCAT TGAGTTTGCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCA CGGTTGTCAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAG GGAGTGGACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGA ATCCATGCTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGG ACGGCATGATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAG GACAGACAGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGG CTTCGACATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCG ACGTGGTCGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAG GTGGATCTGTATACCGTGCAAAAGGCCGATCTTAACTTCTCGTCCAAGTT CAGCCTATGCATCAAGCGCAACGACTTCGTGCAGGCATTAGTCACCTACT TTAATATAGAGTTCACCAAGTGCCACAAGCGTCTTGGGTTCAGTACGTCA CCAGACTCCACATACACGCATTGGAAGCAAACCGTGTTCTACCTCGATGA CCACATGACGGCAAAGAAGAACGAGGAGATCACTGGCACGTTCCAGATGA AGCCCAACGAGCGGAACAACCGTGACCTGGACTTCGTCATCGACATTAAT TTCAAGGGCGAATTGTCTCAAATTCAGGAGTCGAACACATACCGCATGCG CTAGGGGCAGCCATAACCAATCCGATCTGCCATTTGGGATGGGGCTCAGA GCCCTGCAGCGAGGATACATACAATGACTAGACGTAAGGTTTATTCCAGT GCGAAATGTGCAACGAATTCGTGTTGCGTCTTCTCCTAAGTTTAAAGTGT ACCTTTGTTAGTATACATAATATTTTACACTCGTGCGCCTGTTTAAATTA TTATTCGAACATACTTCTAAGCAAGTTGTACAGCAGCACGTCAATTCTCA CATAATAAACAGTGCACTAAGCACGTCCCCTTTTGCTGGAAAAAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Art1-RA | 1681 | Art1-RA | 186..1681 | 1..1496 | 7465 | 99.9 | Plus |
Art1.a | 1634 | Art1.a | 139..1634 | 1..1496 | 7465 | 99.9 | Plus |
Art1.b | 1234 | Art1.b | 97..1234 | 352..1489 | 5690 | 100 | Plus |
Art1.b | 1234 | Art1.b | 22..97 | 1..76 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6611999..6612906 | 1489..582 | 4525 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 6613291..6613567 | 352..76 | 1385 | 100 | Minus |
chr3R | 27901430 | chr3R | 6612993..6613224 | 582..351 | 1130 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 6613629..6613705 | 77..1 | 370 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10786474..10787388 | 1496..582 | 4560 | 99.9 | Minus |
3R | 32079331 | 3R | 10787773..10788049 | 352..76 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 10787475..10787706 | 582..351 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 10788111..10788187 | 77..1 | 385 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10527305..10528219 | 1496..582 | 4560 | 99.8 | Minus |
3R | 31820162 | 3R | 10528604..10528880 | 352..76 | 1385 | 100 | Minus |
3R | 31820162 | 3R | 10528306..10528537 | 582..351 | 1160 | 100 | Minus |
3R | 31820162 | 3R | 10528942..10529018 | 77..1 | 385 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6611999..6612905 | 583..1489 | 99 | <- | Minus |
chr3R | 6612993..6613222 | 353..582 | 99 | <- | Minus |
chr3R | 6613291..6613566 | 77..352 | 100 | <- | Minus |
chr3R | 6613630..6613705 | 1..76 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 1..1131 | 74..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 1..1131 | 74..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 1..1131 | 74..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 1..1131 | 74..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 1..1131 | 74..1204 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 22..1510 | 1..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 22..1510 | 1..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 40..1528 | 1..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 22..1510 | 1..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Art1-RA | 40..1528 | 1..1489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10786481..10787387 | 583..1489 | 100 | <- | Minus |
3R | 10787475..10787704 | 353..582 | 100 | <- | Minus |
3R | 10787773..10788048 | 77..352 | 100 | <- | Minus |
3R | 10788112..10788187 | 1..76 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10786481..10787387 | 583..1489 | 100 | <- | Minus |
3R | 10787475..10787704 | 353..582 | 100 | <- | Minus |
3R | 10787773..10788048 | 77..352 | 100 | <- | Minus |
3R | 10788112..10788187 | 1..76 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10786481..10787387 | 583..1489 | 100 | <- | Minus |
3R | 10787475..10787704 | 353..582 | 100 | <- | Minus |
3R | 10787773..10788048 | 77..352 | 100 | <- | Minus |
3R | 10788112..10788187 | 1..76 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6612203..6613109 | 583..1489 | 100 | <- | Minus |
arm_3R | 6613197..6613426 | 353..582 | 100 | <- | Minus |
arm_3R | 6613495..6613770 | 77..352 | 100 | <- | Minus |
arm_3R | 6613834..6613909 | 1..76 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10527312..10528218 | 583..1489 | 100 | <- | Minus |
3R | 10528306..10528535 | 353..582 | 100 | <- | Minus |
3R | 10528604..10528879 | 77..352 | 100 | <- | Minus |
3R | 10528943..10529018 | 1..76 | 100 | Minus |
Translation from 73 to 1203
> LD28808.pep MASTDIPMEAAVESATGITPNSNANSNNVAKKLPAEGSTGDNPNANADEM TSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGC GTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIE EIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDR GTLYITAIEDRQYKDEKINWWDDVYGFDMSCIRKVAVTEPLVDVVDPKQV VSTSCMVKEVDLYTVQKADLNFSSKFSLCIKRNDFVQALVTYFNIEFTKC HKRLGFSTSPDSTYTHWKQTVFYLDDHMTAKKNEEITGTFQMKPNERNNR DLDFVIDINFKGELSQIQESNTYRMR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17088-PA | 372 | GF17088-PA | 1..372 | 8..376 | 1816 | 91.8 | Plus |
Dana\GF14882-PA | 369 | GF14882-PA | 39..360 | 48..373 | 766 | 43.9 | Plus |
Dana\GF18899-PA | 348 | GF18899-PA | 27..340 | 56..368 | 692 | 41 | Plus |
Dana\GF11802-PA | 520 | GF11802-PA | 204..510 | 41..358 | 644 | 42.1 | Plus |
Dana\GF10317-PA | 511 | GF10317-PA | 119..448 | 4..344 | 566 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17264-PA | 397 | GG17264-PA | 23..397 | 2..376 | 2019 | 99.2 | Plus |
Dere\GG24386-PA | 355 | GG24386-PA | 17..336 | 41..363 | 780 | 46 | Plus |
Dere\GG17013-PA | 345 | GG17013-PA | 23..336 | 56..368 | 735 | 41.6 | Plus |
Dere\GG20792-PA | 517 | GG20792-PA | 188..507 | 35..358 | 659 | 41 | Plus |
Dere\GG17314-PA | 530 | GG17314-PA | 137..465 | 49..376 | 539 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19565-PA | 382 | GH19565-PA | 1..382 | 8..376 | 1775 | 87.4 | Plus |
Dgri\GH18753-PA | 507 | GH18753-PA | 181..499 | 37..362 | 656 | 41.4 | Plus |
Dgri\GH16647-PA | 336 | GH16647-PA | 20..332 | 58..376 | 592 | 37.5 | Plus |
Dgri\GH14177-PA | 544 | GH14177-PA | 146..474 | 49..376 | 531 | 37.7 | Plus |
Dgri\GH15628-PA | 407 | GH15628-PA | 35..334 | 46..343 | 477 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Art1-PA | 376 | CG6554-PA | 1..376 | 1..376 | 1981 | 100 | Plus |
Art2-PB | 355 | CG3675-PB | 10..335 | 36..362 | 768 | 46.4 | Plus |
Art2-PA | 355 | CG3675-PA | 10..335 | 36..362 | 768 | 46.4 | Plus |
Art6-PA | 341 | CG9927-PA | 19..337 | 56..373 | 705 | 40.6 | Plus |
Art3-PB | 474 | CG6563-PB | 140..464 | 31..358 | 636 | 40.4 | Plus |
Art3-PA | 516 | CG6563-PA | 182..506 | 31..358 | 636 | 40.4 | Plus |
Art4-PB | 530 | CG5358-PB | 137..465 | 49..376 | 514 | 38 | Plus |
Art4-PA | 530 | CG5358-PA | 137..465 | 49..376 | 514 | 38 | Plus |
CG32152-PC | 357 | CG32152-PC | 1..305 | 50..352 | 512 | 33.4 | Plus |
CG32152-PB | 357 | CG32152-PB | 1..305 | 50..352 | 512 | 33.4 | Plus |
Art8-PA | 341 | CG16840-PA | 5..309 | 56..358 | 459 | 36.3 | Plus |
Art9-PA | 313 | CG9929-PA | 13..303 | 67..354 | 387 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23860-PA | 387 | GI23860-PA | 5..387 | 10..376 | 1764 | 86.3 | Plus |
Dmoj\GI24669-PA | 431 | GI24669-PA | 124..425 | 56..364 | 686 | 43.4 | Plus |
Dmoj\GI11605-PA | 338 | GI11605-PA | 23..332 | 59..376 | 598 | 37.5 | Plus |
Dmoj\GI12675-PA | 632 | GI12675-PA | 269..581 | 32..344 | 573 | 34.6 | Plus |
Dmoj\GI22087-PA | 539 | GI22087-PA | 145..473 | 49..376 | 530 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21930-PA | 392 | GL21930-PA | 18..392 | 2..376 | 1839 | 89.6 | Plus |
Dper\GL16439-PA | 366 | GL16439-PA | 28..355 | 53..373 | 728 | 42.1 | Plus |
Dper\GL23322-PA | 351 | GL23322-PA | 9..341 | 38..369 | 697 | 39.5 | Plus |
Dper\GL12077-PA | 514 | GL12077-PA | 206..504 | 56..358 | 632 | 42.2 | Plus |
Dper\GL27288-PA | 531 | GL27288-PA | 137..465 | 49..376 | 533 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19682-PA | 392 | GA19682-PA | 18..392 | 2..376 | 1839 | 89.6 | Plus |
Dpse\GA17605-PA | 366 | GA17605-PA | 16..355 | 40..373 | 732 | 41.9 | Plus |
Dpse\GA27221-PA | 351 | GA27221-PA | 15..338 | 44..366 | 690 | 40 | Plus |
Dpse\GA19687-PA | 514 | GA19687-PA | 206..504 | 56..358 | 631 | 42.2 | Plus |
Dpse\GA19687-PB | 481 | GA19687-PB | 149..471 | 36..358 | 630 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26148-PA | 397 | GM26148-PA | 23..397 | 2..376 | 2000 | 98.7 | Plus |
Dsec\GM18100-PA | 355 | GM18100-PA | 15..336 | 41..363 | 788 | 46.6 | Plus |
Dsec\GM25897-PA | 444 | GM25897-PA | 87..440 | 7..373 | 747 | 38.6 | Plus |
Dsec\GM25795-PA | 516 | GM25795-PA | 180..506 | 29..358 | 678 | 41.7 | Plus |
Dsec\GM26200-PA | 530 | GM26200-PA | 137..465 | 49..376 | 537 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20702-PA | 397 | GD20702-PA | 23..397 | 2..376 | 2021 | 99.2 | Plus |
Dsim\GD22717-PA | 355 | GD22717-PA | 15..336 | 41..363 | 795 | 46.6 | Plus |
Dsim\GD20467-PA | 341 | GD20467-PA | 19..337 | 56..373 | 742 | 40.9 | Plus |
Dsim\GD20372-PA | 477 | GD20372-PA | 141..467 | 29..358 | 677 | 41.7 | Plus |
Dsim\GD20747-PA | 530 | GD20747-PA | 137..465 | 49..376 | 537 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10573-PA | 381 | GJ10573-PA | 1..381 | 8..376 | 1787 | 87.7 | Plus |
Dvir\GJ24043-PA | 508 | GJ24043-PA | 201..497 | 56..357 | 666 | 43.9 | Plus |
Dvir\GJ11284-PA | 311 | GJ11284-PA | 1..305 | 70..376 | 567 | 36.9 | Plus |
Dvir\GJ24202-PA | 538 | GJ24202-PA | 144..472 | 49..376 | 530 | 37.7 | Plus |
Dvir\GJ12659-PA | 473 | GJ12659-PA | 115..434 | 31..360 | 517 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13389-PA | 382 | GK13389-PA | 12..382 | 15..376 | 1775 | 88.7 | Plus |
Dwil\GK24448-PA | 383 | GK24448-PA | 54..372 | 56..373 | 871 | 49.2 | Plus |
Dwil\GK22483-PA | 344 | GK22483-PA | 17..331 | 56..368 | 746 | 43.7 | Plus |
Dwil\GK12781-PA | 517 | GK12781-PA | 209..513 | 56..366 | 643 | 42.8 | Plus |
Dwil\GK17166-PA | 331 | GK17166-PA | 13..309 | 60..363 | 578 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24666-PA | 378 | GE24666-PA | 1..378 | 1..376 | 2019 | 99.2 | Plus |
Dyak\GE24405-PA | 345 | GE24405-PA | 23..341 | 56..373 | 748 | 41.9 | Plus |
Dyak\GE14754-PA | 355 | GE14754-PA | 15..335 | 41..362 | 739 | 45.2 | Plus |
Dyak\GE26400-PA | 516 | GE26400-PA | 188..506 | 36..358 | 652 | 40.9 | Plus |
Dyak\GE24716-PA | 530 | GE24716-PA | 137..465 | 49..376 | 538 | 38 | Plus |
Translation from 73 to 1203
> LD28808.hyp MASTDIPMEAAVESATGITPNSNANSNNVAKKLPAEGSTGDNPNANADEM TSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGC GTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIE EIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDR GTLYITAIEDRQYKDEKINWWDDVYGFDMSCIRKVAVTEPLVDVVDPKQV VSTSCMVKEVDLYTVQKADLNFSSKFSLCIKRNDFVQALVTYFNIEFTKC HKRLGFSTSPDSTYTHWKQTVFYLDDHMTAKKNEEITGTFQMKPNERNNR DLDFVIDINFKGELSQIQESNTYRMR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Art1-PA | 376 | CG6554-PA | 1..376 | 1..376 | 1981 | 100 | Plus |
Art2-PB | 355 | CG3675-PB | 10..335 | 36..362 | 768 | 46.4 | Plus |
Art2-PA | 355 | CG3675-PA | 10..335 | 36..362 | 768 | 46.4 | Plus |
Art6-PA | 341 | CG9927-PA | 19..337 | 56..373 | 705 | 40.6 | Plus |
Art3-PB | 474 | CG6563-PB | 140..464 | 31..358 | 636 | 40.4 | Plus |